DC-Build-Header: seqan2 2.4.0+dfsg-12 / 2020-05-03 02:19:36 +0000 DC-Task: type:rebuild-binarch-only source:seqan2 version:2.4.0+dfsg-12 chroot:unstable esttime:11616 logfile:/tmp/seqan2_2.4.0+dfsg-12_unstable_clang10.log modes:clang10:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang10 seqan2_2.4.0+dfsg-12' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-11-144.eu-central-1.compute.internal +==============================================================================+ | seqan2 2.4.0+dfsg-12 (amd64) Sun, 03 May 2020 02:19:36 +0000 | +==============================================================================+ Package: seqan2 Version: 2.4.0+dfsg-12 Source Version: 2.4.0+dfsg-12 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-3c45e379-7f11-4748-aba4-39614527f3c8' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang10 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=10 + echo 'Install of clang-10' Install of clang-10 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [146 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-05-02-0208.16.pdiff [3982 B] Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-05-02-0807.49.pdiff [10.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-05-02-1412.30.pdiff [12.9 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-05-02-2007.10.pdiff [13.4 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-05-02-2007.10.pdiff [13.4 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-05-02-0208.16.pdiff [2772 B] Get:9 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-05-02-0807.49.pdiff [3238 B] Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-05-02-1412.30.pdiff [7641 B] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-05-02-2007.10.pdiff [10.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-05-02-2007.10.pdiff [10.5 kB] Get:12 http://127.0.0.1:12990/debian sid/main Translation-en [6192 kB] Fetched 6459 kB in 2s (4026 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-10 libomp-10-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1c2 libllvm10 libobjc4 libomp5-10 libz3-4 Suggested packages: clang-10-doc libomp-10-doc Recommended packages: llvm-10-dev python3 The following NEW packages will be installed: clang-10 lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1c2 libllvm10 libobjc-9-dev libobjc4 libomp-10-dev libomp5-10 libz3-4 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 49.8 MB of archives. After this operation, 259 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libllvm10 amd64 1:10.0.0-4 [15.5 MB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp10 amd64 1:10.0.0-4 [10.1 MB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200418-1 [41.7 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.3.0-11 [218 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.30-4 [2926 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200418-1 [49.4 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200418-1 [1100 B] Get:12 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200418-1 [510 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-10-dev amd64 1:10.0.0-4 [5062 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libclang1-10 amd64 1:10.0.0-4 [7609 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 clang-10 amd64 1:10.0.0-4 [105 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libomp5-10 amd64 1:10.0.0-4 [338 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libomp-10-dev amd64 1:10.0.0-4 [85.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.8 MB in 0s (138 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12123 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20191231-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../02-libz3-4_4.8.7-4_amd64.deb ... Unpacking libz3-4:amd64 (4.8.7-4) ... Selecting previously unselected package libllvm10:amd64. Preparing to unpack .../03-libllvm10_1%3a10.0.0-4_amd64.deb ... Unpacking libllvm10:amd64 (1:10.0.0-4) ... Selecting previously unselected package libclang-cpp10. Preparing to unpack .../04-libclang-cpp10_1%3a10.0.0-4_amd64.deb ... Unpacking libclang-cpp10 (1:10.0.0-4) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../05-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../06-libobjc4_10-20200418-1_amd64.deb ... Unpacking libobjc4:amd64 (10-20200418-1) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../07-libobjc-9-dev_9.3.0-11_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.3.0-11) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../08-libc6-i386_2.30-4_amd64.deb ... Unpacking libc6-i386 (2.30-4) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../09-lib32gcc-s1_10-20200418-1_amd64.deb ... Unpacking lib32gcc-s1 (10-20200418-1) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../10-lib32gcc1_1%3a10-20200418-1_amd64.deb ... Unpacking lib32gcc1 (1:10-20200418-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../11-lib32stdc++6_10-20200418-1_amd64.deb ... Unpacking lib32stdc++6 (10-20200418-1) ... Selecting previously unselected package libclang-common-10-dev. Preparing to unpack .../12-libclang-common-10-dev_1%3a10.0.0-4_amd64.deb ... Unpacking libclang-common-10-dev (1:10.0.0-4) ... Selecting previously unselected package libclang1-10. Preparing to unpack .../13-libclang1-10_1%3a10.0.0-4_amd64.deb ... Unpacking libclang1-10 (1:10.0.0-4) ... Selecting previously unselected package clang-10. Preparing to unpack .../14-clang-10_1%3a10.0.0-4_amd64.deb ... Unpacking clang-10 (1:10.0.0-4) ... Selecting previously unselected package libomp5-10:amd64. Preparing to unpack .../15-libomp5-10_1%3a10.0.0-4_amd64.deb ... Unpacking libomp5-10:amd64 (1:10.0.0-4) ... Selecting previously unselected package libomp-10-dev. Preparing to unpack .../16-libomp-10-dev_1%3a10.0.0-4_amd64.deb ... Unpacking libomp-10-dev (1:10.0.0-4) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libobjc4:amd64 (10-20200418-1) ... Setting up libz3-4:amd64 (4.8.7-4) ... Setting up libobjc-9-dev:amd64 (9.3.0-11) ... Setting up libomp5-10:amd64 (1:10.0.0-4) ... Setting up libc6-i386 (2.30-4) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libomp-10-dev (1:10.0.0-4) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libllvm10:amd64 (1:10.0.0-4) ... Setting up lib32gcc-s1 (10-20200418-1) ... Setting up libclang1-10 (1:10.0.0-4) ... Setting up lib32gcc1 (1:10-20200418-1) ... Setting up libclang-cpp10 (1:10.0.0-4) ... Setting up lib32stdc++6 (10-20200418-1) ... Setting up libclang-common-10-dev (1:10.0.0-4) ... Setting up clang-10 (1:10.0.0-4) ... Processing triggers for libc-bin (2.30-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-10 g++-4.6 + ln -s clang-10 gcc-4.6 + ln -s clang-10 cpp-4.6 + ln -s clang-10 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-10 g++-4.7 + ln -s clang-10 gcc-4.7 + ln -s clang-10 cpp-4.7 + ln -s clang-10 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-10 g++-4.8 + ln -s clang-10 gcc-4.8 + ln -s clang-10 cpp-4.8 + ln -s clang-10 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-10 g++-4.9 + ln -s clang-10 gcc-4.9 + ln -s clang-10 cpp-4.9 + ln -s clang-10 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-10 g++-5 + ln -s clang-10 gcc-5 + ln -s clang-10 cpp-5 + ln -s clang-10 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-10 g++-6 + ln -s clang-10 gcc-6 + ln -s clang-10 cpp-6 + ln -s clang-10 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-10 g++-7 + ln -s clang-10 gcc-7 + ln -s clang-10 cpp-7 + ln -s clang-10 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-10 g++-8 + ln -s clang-10 gcc-8 + ln -s clang-10 cpp-8 + ln -s clang-10 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-10 g++-9 + ln -s clang-10 gcc-9 + ln -s clang-10 cpp-9 + ln -s clang-10 gcc + echo 'gcc-9 hold' + dpkg --set-selections + echo 'g++-9 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-10 g++-10 + ln -s clang-10 gcc-10 + ln -s clang-10 cpp-10 + ln -s clang-10 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/seqan2-AmdeyT + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-10 clang++ + ln -s clang-10 clang + clang++ --version clang version 10.0.0-4 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version clang version 10.0.0-4 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/seqan2-AmdeyT + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 1270 kB of archives. After this operation, 4788 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.12.5+dfsg-10 [1015 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.12.5+dfsg-10 [229 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1270 kB in 0s (19.8 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12968 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.12.5+dfsg-10_amd64.deb ... Unpacking qt5-qmake-bin (5.12.5+dfsg-10) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.12.5+dfsg-10_amd64.deb ... Unpacking qt5-qmake:amd64 (5.12.5+dfsg-10) ... Setting up qt5-qmake-bin (5.12.5+dfsg-10) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.12.5+dfsg-10) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 May 3 02:19 . drwxr-xr-x 75 root root 4096 May 3 02:19 .. -rw-r--r-- 1 root root 276 May 3 02:19 qmake.conf -rw-r--r-- 1 root root 3218 May 3 02:19 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang10'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/seqan2-AmdeyT/resolver-UQTfnM' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'seqan2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqan2.git Please use: git clone https://salsa.debian.org/med-team/seqan2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.2 MB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main seqan2 2.4.0+dfsg-12 (dsc) [2302 B] Get:2 http://127.0.0.1:12990/debian sid/main seqan2 2.4.0+dfsg-12 (tar) [84.1 MB] Get:3 http://127.0.0.1:12990/debian sid/main seqan2 2.4.0+dfsg-12 (diff) [28.8 kB] Fetched 84.2 MB in 1s (129 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/seqan2-AmdeyT/seqan2-2.4.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/seqan2-AmdeyT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), python3, cmake, fakeroot, build-essential, fakeroot, zlib1g-dev, libbz2-dev, libbam-dev, libboost-dev, help2man, ctdconverter Filtered Build-Depends: debhelper-compat (= 12), python3, cmake, fakeroot, build-essential, fakeroot, zlib1g-dev, libbz2-dev, libbam-dev, libboost-dev, help2man, ctdconverter dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [426 B] Get:5 copy:/<>/apt_archive ./ Packages [497 B] Fetched 1880 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data ctdconverter debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libbam-dev libboost-dev libboost1.67-dev libbrotli1 libbz2-dev libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libxml2 libxslt1.1 m4 man-db mime-support po-debconf procps python3 python3-ctdopts python3-lxml python3-minimal python3-pkg-resources python3-ruamel.yaml python3-tz python3.8 python3.8-minimal readline-common sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build cwl-runner dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-contract1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3-lxml-dbg python-lxml-doc python3-setuptools python3.8-venv python3.8-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc python3-bs4 python3-html5lib The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data ctdconverter debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libbam-dev libboost-dev libboost1.67-dev libbrotli1 libbz2-dev libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libxml2 libxslt1.1 m4 man-db mime-support po-debconf procps python3 python3-ctdopts python3-lxml python3-minimal python3-pkg-resources python3-ruamel.yaml python3-tz python3.8 python3.8-minimal readline-common sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 46.4 MB of archives. After this operation, 272 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libpython3.8-minimal amd64 3.8.3~rc1-1 [760 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 python3.8-minimal amd64 3.8.3~rc1-1 [1944 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 python3-minimal amd64 3.8.2-3 [37.6 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 mime-support all 3.64 [37.8 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libmpdec2 amd64 2.4.2-3 [84.1 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 readline-common all 8.0-4 [72.5 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libpython3.8-stdlib amd64 3.8.3~rc1-1 [1667 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 python3.8 amd64 3.8.3~rc1-1 [415 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libncurses6 amd64 6.2-1 [102 kB] Get:23 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amd64 automake all 1:1.16.2-1 [775 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 cmake-data all 3.16.3-2 [1628 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 libarchive13 amd64 3.4.0-2 [335 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.7-6.1 [267 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libkrb5support0 amd64 1.17-7 [64.4 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libk5crypto3 amd64 1.17-7 [115 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libkrb5-3 amd64 1.17-7 [366 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libgssapi-krb5-2 amd64 1.17-7 [156 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amd64 1.3.9-1 [123 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 libuv1 amd64 1.35.0-2 [128 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 cmake amd64 3.16.3-2 [3675 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 python3-tz all 2019.3-2 [27.3 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 python3-ctdopts all 1.3-1 [22.3 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 libxslt1.1 amd64 1.1.34-4 [239 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 python3-lxml amd64 4.5.0-1.1 [1425 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 python3-pkg-resources all 46.1.3-1 [183 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 python3-ruamel.yaml amd64 0.15.89-3+b2 [242 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 ctdconverter all 2.1-2 [27.6 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-14 [513 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13 [184 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:80 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13 [1002 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 help2man amd64 1.47.15 [181 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 libbam-dev amd64 0.1.19-4 [125 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 libboost1.67-dev amd64 1.67.0-17+b1 [8389 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libboost-dev amd64 1.67.0.2+b1 [4496 B] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libbz2-dev amd64 1.0.8-2 [30.1 kB] Get:86 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.4 MB in 0s (135 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 13685 files and directories currently installed.) Preparing to unpack .../0-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../5-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... 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Setting up libglib2.0-0:amd64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13) ... Setting up libbrotli1:amd64 (1.0.7-6.1) ... Setting up libsqlite3-0:amd64 (3.31.1-5) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.50+dfsg-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libkrb5support0:amd64 (1.17-7) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.35.0-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-10) ... Setting up libbam-dev (0.1.19-4) ... Setting up libk5crypto3:amd64 (1.17-7) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-2) ... Setting up libkrb5-3:amd64 (1.17-7) ... Setting up libboost-dev:amd64 (1.67.0.2+b1) ... Setting up libmpdec2:amd64 (2.4.2-3) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libprocps8:amd64 (2:3.3.16-4) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up libbz2-dev:amd64 (1.0.8-2) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:amd64 (3.4.0-2) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libldap-2.4-2:amd64 (2.4.50+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up help2man (1.47.15) ... Setting up libgssapi-krb5-2:amd64 (1.17-7) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up procps (2:3.3.16-4) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libxslt1.1:amd64 (1.1.34-4) ... Setting up libcurl4:amd64 (7.68.0-1) ... Setting up libpython3.8-stdlib:amd64 (3.8.3~rc1-1) ... Setting up python3.8 (3.8.3~rc1-1) ... Setting up libpython3-stdlib:amd64 (3.8.2-3) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up python3 (3.8.2-3) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-tz (2019.3-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-ruamel.yaml (0.15.89-3+b2) ... Setting up python3-lxml:amd64 (4.5.0-1.1) ... Setting up cmake (3.16.3-2) ... Setting up python3-pkg-resources (46.1.3-1) ... Setting up python3-ctdopts (1.3-1) ... Setting up po-debconf (1.0.21) ... Setting up ctdconverter (2.1-2) ... /usr/lib/python3/dist-packages/galaxy/converter.py:397: SyntaxWarning: "is" with a literal. Did you mean "=="? elif TYPE_TO_GALAXY_TYPE[param.type] is 'text': Setting up debhelper (13) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-6 dpkg-dev_1.19.7 g++-9_9.3.0-11 gcc-9_9.3.0-11 libc6-dev_2.30-4 libstdc++-9-dev_9.3.0-11 libstdc++6_10-20200418-1 linux-libc-dev_5.6.7-1 Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-6 binutils-common_2.34-6 binutils-x86-64-linux-gnu_2.34-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 clang-10_1:10.0.0-4 cmake_3.16.3-2 cmake-data_3.16.3-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.3.0-11 ctdconverter_2.1-2 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-11 gcc_4:9.2.1-3.1 gcc-10-base_10-20200418-1 gcc-9_9.3.0-11 gcc-9-base_9.3.0-11 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 help2man_1.47.15 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200418-1 lib32gcc1_1:10-20200418-1 lib32stdc++6_10-20200418-1 libacl1_2.2.53-8 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libarchive13_3.4.0-2 libasan5_9.3.0-11 libatomic1_10-20200418-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbam-dev_0.1.19-4 libbinutils_2.34-6 libblkid1_2.34-0.1 libboost-dev_1.67.0.2+b1 libboost1.67-dev_1.67.0-17+b1 libbrotli1_1.0.7-6.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-4 libc-dev-bin_2.30-4 libc6_2.30-4 libc6-dev_2.30-4 libc6-i386_2.30-4 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200418-1 libclang-common-10-dev_1:10.0.0-4 libclang-cpp10_1:10.0.0-4 libclang1-10_1:10.0.0-4 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-6 libctf0_2.34-6 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgc1c2_1:7.6.4-0.4 libgcc-9-dev_9.3.0-11 libgcc-s1_10-20200418-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libitm1_10-20200418-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-7 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7 libkrb5support0_1.17-7 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 libllvm10_1:10.0.0-4 liblocale-gettext-perl_1.07-4 liblsan0_10-20200418-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libobjc-9-dev_9.3.0-11 libobjc4_10-20200418-1 libomp-10-dev_1:10.0.0-4 libomp5-10_1:10.0.0-4 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-4 libpsl5_0.21.0-1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.3~rc1-1 libpython3.8-stdlib_3.8.3~rc1-1 libquadmath0_10-20200418-1 libreadline8_8.0-4 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-11 libstdc++6_10-20200418-1 libsub-override-perl_0.09-2 libsystemd0_245.5-2 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200418-1 libubsan1_10-20200418-1 libuchardet0_0.0.6-3 libudev1_245.5-2 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.35.0-2 libxml2_2.9.10+dfsg-5 libxslt1.1_1.1.34-4 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.6.7-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.3 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 po-debconf_1.0.21 procps_2:3.3.16-4 python3_3.8.2-3 python3-ctdopts_1.3-1 python3-lxml_4.5.0-1.1 python3-minimal_3.8.2-3 python3-pkg-resources_46.1.3-1 python3-ruamel.yaml_0.15.89-3+b2 python3-tz_2019.3-2 python3.8_3.8.3~rc1-1 python3.8-minimal_3.8.3~rc1-1 qt5-qmake_5.12.5+dfsg-10 qt5-qmake-bin_5.12.5+dfsg-10 qtchooser_66-2 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan2 Binary: seqan-apps, libseqan2-dev Architecture: any all Version: 2.4.0+dfsg-12 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Michael R. Crusoe , Kevin Murray Homepage: http://www.seqan.de/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/seqan2 Vcs-Git: https://salsa.debian.org/med-team/seqan2.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, libbam-dev, libboost-dev, libbz2-dev, zlib1g-dev Build-Depends: debhelper-compat (= 12), python3, cmake, fakeroot Build-Depends-Arch: zlib1g-dev, libbz2-dev, libbam-dev, libboost-dev, help2man, ctdconverter Package-List: libseqan2-dev deb libdevel optional arch=all seqan-apps deb science optional arch=any Checksums-Sha1: 119b812a854d626deb890762ef57e6a1b2ced0ff 84125556 seqan2_2.4.0+dfsg.orig.tar.xz 17b16f3af3f4ce4a11f30e07ea8cb2c9ef77b37e 28848 seqan2_2.4.0+dfsg-12.debian.tar.xz Checksums-Sha256: 9e69ff4130519b9c9bf019df6faaa280f35d9fd0485cfcfe270c525744bbe86e 84125556 seqan2_2.4.0+dfsg.orig.tar.xz b9936b86aa961c1c9a4a5f977660c47f9b4f0bbff60e9f354bef735ee2d4042f 28848 seqan2_2.4.0+dfsg-12.debian.tar.xz Files: c0a126276b1b2864cde3a3b00a7516b5 84125556 seqan2_2.4.0+dfsg.orig.tar.xz 74e69cf6f0e57b2c158d733e2df50f65 28848 seqan2_2.4.0+dfsg-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl4+9LAACgkQPCZ2P2xn 5uIW4w//WwIDrI4x9HwDo7KKlO4QjBBA0U2OG6zaUDLw5XUHK0aljBodU3uIt7AG LGONIZl8cTCopI9utou6L9a5kU1i8tPrGUWD43L7bp8BVd5GAkUlKWmVbcZmDbRr nc/0nNzib6o0BC0uEHqYuUCs+Jp7mxykAfuap6cnHjGuzMbhE03Pm78t1g+y/dKF Y4sKnBBuOLNk4tdaKOHYosBAaCb+lubLf/FfcA8RafT+kVrJjoyk0wtrHITsB6UX 58aeWYFRKDdP8INvez7jweN7F0ZQamtKJPNDNFaZBFQEsqduYLZ0AShHljMbYYrl IqyJnfwfdiKswrPsxyT0B0cSiW0CTkEpVF0DWCZOuvsGPEGExo+h78ls/Sjzi7Ll stbUw3bLMddBczGxeeLkX5plTJKSSY7CEFt885lXqYVMVD6igpKBYLmNIX575lWx syfmDZB4vt96qi72VHoBRv17lE5HCmUMtaenDPRsRBCYfPulH9RGvQi8BQbTRyQ3 hz6Ximeyfze0QCX83Nb2LxFyT5/HPKDUVquRvnYH8NC/xe1NmVTvkZriSf9nJ2Ny kIwX1lfnOx5f1aZSOQx5fEyCOdw5ffEicbBKsmH7RUpYRHQFAkLBaMmGFopP6xLr g6b7B3U7EC1OWXbP+X8nNg/UetchHOoDraXMaPKrstYa6r5IpRw= =WwFE -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 8 17:49:36 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./seqan2_2.4.0+dfsg-12.dsc dpkg-source: info: extracting seqan2 in /<> dpkg-source: info: unpacking seqan2_2.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking seqan2_2.4.0+dfsg-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying skip-seqan-revision dpkg-source: info: applying fix-version_check-test dpkg-source: info: applying skip-some-apps-on-some-archs dpkg-source: info: applying tweak_readmes dpkg-source: info: applying install_fiona_illumina dpkg-source: info: applying ctdVersion.patch dpkg-source: info: applying fix_manpage_formatting.patch dpkg-source: info: applying no-unaligned-access.patch dpkg-source: info: applying ia64_yield dpkg-source: info: applying python3 Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-3c45e379-7f11-4748-aba4-39614527f3c8 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package seqan2 dpkg-buildpackage: info: source version 2.4.0+dfsg-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean find . -type f -name "*.pyc" -delete if [ -d orig ] ; then \ for header in `find orig -name "*generated_forwards.h"` ; do \ mv ${header} `echo $header | sed 's?orig/??'` ; \ done ; \ fi rm -rf orig make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/seqan-apps.substvars debian/libseqan2-dev.substvars debian/files rm -fr -- debian/seqan-apps/ debian/tmp/ debian/libseqan2-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' export DEB_BUILD_ARCH=amd64 ; \ dh_auto_configure --arch -- \ -DSEQAN_STATIC_APPS=False -DSEQAN_NO_DOX=1 \ -DSEQAN_DISABLE_VERSION_CHECK=YES install -d obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_AUTOGEN_VERBOSE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN_STATIC_APPS=False -DSEQAN_NO_DOX=1 -DSEQAN_DISABLE_VERSION_CHECK=YES .. -- The CXX compiler identification is Clang 10.0.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Scanning dependencies once in DEVELOP mode... -- Found OpenMP_CXX: -fopenmp=libomp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found Boost: /usr/include (found version "1.67.0") -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found Seqan: /<>/include (found version "2.4.0") -- Selected repository dir: /<> -- Repository date not determined. -- Repository revision not determined. -- Configuring tests -- Configuring tests -- Configuring tests/align -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Performing Test SSE4_SOURCE_RUNS -- Performing Test SSE4_SOURCE_RUNS - Success (Compiled & Host CPU support) -- Performing Test AVX2_SOURCE_RUNS -- Performing Test AVX2_SOURCE_RUNS - Success (Compiled & Host CPU support) -- Performing Test AVX512_KNL_SOURCE_RUNS -- Performing Test AVX512_KNL_SOURCE_RUNS - Success (Compiled & Host CPU support) -- Performing Test AVX512_SKX_SOURCE_RUNS -- Performing Test AVX512_SKX_SOURCE_RUNS - Success (Compiled & Host CPU support) -- Performing Test AVX512_CNL_SOURCE_RUNS -- Performing Test AVX512_CNL_SOURCE_RUNS - Success (Compiled & Host CPU support) -- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED -- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED - Success -- Performing Test SEQANSIMD_AVX512_KNL_SOURCE_RUNS -- Performing Test SEQANSIMD_AVX512_KNL_SOURCE_RUNS - Success (Compiled & Host CPU support) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/align_extend -- Configuring tests/align_parallel -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/align_profile -- Configuring tests/align_split -- Configuring tests/alignment_free -- Configuring tests/arg_parse -- Configuring tests/bam_io -- Configuring tests/basic -- Configuring tests/bed_io -- Configuring tests/blast -- Configuring tests/consensus -- Configuring tests/consensus_v2 -- Configuring tests/find -- Configuring tests/gff_io -- Configuring tests/graph_algorithms -- Configuring tests/graph_align -- Configuring tests/graph_msa -- Configuring tests/graph_types -- Configuring tests/index -- Configuring tests/journaled_set -- Configuring tests/journaled_string_tree -- Configuring tests/map -- Configuring tests/misc -- Configuring tests/modifier -- Configuring tests/modifier_cyclic_shape -- Configuring tests/multiple_translation_units -- Configuring tests/parallel -- Configuring tests/parse_lm -- Configuring tests/pipe -- Configuring tests/platform -- Configuring tests/random -- Configuring tests/realign -- Configuring tests/reduced_aminoacid -- Configuring tests/rna_io -- Configuring tests/roi_io -- Configuring tests/score -- Configuring tests/seeds -- Configuring tests/seq_io -- Configuring tests/sequence -- Configuring tests/sequence_journaled -- Configuring tests/simd -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/simple_intervals_io -- Configuring tests/statistics -- Configuring tests/store -- Configuring tests/stream -- Configuring tests/find_swift -- Configuring tests/tabix_io -- Configuring tests/translation -- Configuring tests/test_ucsc_io -- Configuring tests/vcf_io -- Configuring demos -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps -- Configuring apps/alf -- Configuring apps/bs_tools -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/dfi -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/fiona -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/fx_tools -- Configuring apps/gustaf -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/insegt -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/mason2 -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/micro_razers -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/ngs_roi -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/pair_align -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/param_chooser -- Configuring apps/rabema -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/razers -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/razers3 -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/rep_sep -- Configuring apps/sak -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/sam2matrix -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/samcat -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/searchjoin -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/seqan_tcoffee -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/seqcons2 -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/sgip -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/snp_store -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/splazers -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/stellar -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/tree_recon -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring apps/yara -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_AUTOGEN_VERBOSE CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/<>' dh_auto_configure --indep -B build -- \ -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 install -d build cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_AUTOGEN_VERBOSE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 .. -- The CXX compiler identification is Clang 10.0.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Selected repository dir: /<> -- Repository date not determined. -- Repository revision not determined. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_AUTOGEN_VERBOSE CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' rm -f debian/libseqan2-dev.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build --arch --max-parallel=2 cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_library make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target seqan_library make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1001 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp Scanning dependencies of target mason_sim make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /<>/apps/mason2/external_split_merge.cpp In file included from /<>/apps/mason2/external_split_merge.cpp:35: In file included from /<>/apps/mason2/external_split_merge.h:52: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/external_split_merge.cpp:35: In file included from /<>/apps/mason2/external_split_merge.h:52: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/external_split_merge.cpp:35: In file included from /<>/apps/mason2/external_split_merge.h:52: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/external_split_merge.cpp:35: In file included from /<>/apps/mason2/external_split_merge.h:52: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/external_split_merge.cpp:35: In file included from /<>/apps/mason2/external_split_merge.h:52: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:307:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/mason2/external_split_merge.cpp:147:38: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here bamFileIns.push_back(new seqan::BamFileIn(*outPtr, *splitter->files[i])); ^ /<>/include/seqan/basic/basic_tangle.h:43:15: note: expanded from macro 'seqan' #define seqan seqan ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 5 warnings generated. [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /<>/apps/mason2/genomic_variants.cpp In file included from /<>/apps/mason2/genomic_variants.cpp:35: In file included from /<>/apps/mason2/genomic_variants.h:49: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/genomic_variants.cpp:35: In file included from /<>/apps/mason2/genomic_variants.h:49: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/genomic_variants.cpp:35: In file included from /<>/apps/mason2/genomic_variants.h:49: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/genomic_variants.cpp:35: In file included from /<>/apps/mason2/genomic_variants.h:49: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/genomic_variants.cpp:35: In file included from /<>/apps/mason2/genomic_variants.h:49: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1441:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1502:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, int, GenomicInterval>' requested here findIntervals(result, it.g, it.pm, query); ^ /<>/apps/mason2/genomic_variants.cpp:718:5: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(intervals, svIntervalTree, svPos); ^ 5 warnings generated. [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /<>/apps/mason2/mason_options.cpp In file included from /<>/apps/mason2/mason_options.cpp:35: In file included from /<>/apps/mason2/mason_options.h:51: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_options.cpp:35: In file included from /<>/apps/mason2/mason_options.h:51: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_options.cpp:35: In file included from /<>/apps/mason2/mason_options.h:51: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_options.cpp:35: In file included from /<>/apps/mason2/mason_options.h:51: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /<>/apps/mason2/methylation_levels.cpp 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target pair_align_global_1001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1111 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/mason2/methylation_levels.cpp:35: In file included from /<>/apps/mason2/methylation_levels.h:38: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/methylation_levels.cpp:35: In file included from /<>/apps/mason2/methylation_levels.h:38: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/methylation_levels.cpp:35: In file included from /<>/apps/mason2/methylation_levels.h:38: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/methylation_levels.cpp:35: In file included from /<>/apps/mason2/methylation_levels.h:38: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /<>/apps/mason2/simulate_454.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/simulate_454.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/simulate_454.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/simulate_454.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/simulate_454.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /<>/apps/mason2/simulate_base.cpp In file included from /<>/apps/mason2/simulate_base.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/simulate_base.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/simulate_base.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/simulate_base.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /<>/apps/mason2/simulate_genome.cpp In file included from /<>/apps/mason2/simulate_genome.cpp:35: In file included from /<>/apps/mason2/simulate_genome.h:44: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/simulate_genome.cpp:35: In file included from /<>/apps/mason2/simulate_genome.h:45: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/simulate_genome.cpp:35: In file included from /<>/apps/mason2/simulate_genome.h:45: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/simulate_genome.cpp:35: In file included from /<>/apps/mason2/simulate_genome.h:44: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /<>/apps/mason2/simulate_illumina.cpp In file included from /<>/apps/mason2/simulate_illumina.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/simulate_illumina.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/simulate_illumina.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/simulate_illumina.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /<>/apps/mason2/simulate_sanger.cpp In file included from /<>/apps/mason2/simulate_sanger.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/simulate_sanger.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/simulate_sanger.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/simulate_sanger.cpp:35: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_1111 [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /<>/apps/mason2/vcf_materialization.cpp 4 warnings generated. make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1101 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/mason2/vcf_materialization.cpp:35: In file included from /<>/apps/mason2/vcf_materialization.h:40: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/vcf_materialization.cpp:35: In file included from /<>/apps/mason2/vcf_materialization.h:41: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/vcf_materialization.cpp:35: In file included from /<>/apps/mason2/vcf_materialization.h:41: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/vcf_materialization.cpp:35: In file included from /<>/apps/mason2/vcf_materialization.h:40: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/vcf_materialization.cpp:35: In file included from /<>/apps/mason2/vcf_materialization.h:40: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/include/seqan/vcf_io/vcf_file.h:198:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >' requested here readHeader(header, context(file), file.iter, file.format); ^ /<>/apps/mason2/vcf_materialization.cpp:171:9: note: in instantiation of function template specialization 'seqan::readHeader' requested here readHeader(vcfHeader, vcfFileIn); ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 5 warnings generated. [ 2%] Linking CXX static library libmason_sim.a cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target mason_sim make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1011 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_1101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0000 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_1011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0001 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1110 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0011 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_1110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0010 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0101 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0100 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1010 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0100 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1100 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_1010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0111 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_1100 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_0110 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_global_1000 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c /<>/apps/pair_align/lib/pair_align_global.cpp In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_global.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::AlignConfig >, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::AlignConfig > >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::AlignConfig > >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_global.cpp:73:1: note: in instantiation of function template specialization 'pairAlignConfig, seqan::AlignConfig > >' requested here PAIR_ALIGN_DEFINE_GLOBAL_FUNC(SEQAN_JOIN(pairAlignGlobal_, PAIR_ALIGN_GLOBAL_FUNC_SUFFIX)) ^ /<>/apps/pair_align/lib/pair_align_global.cpp:68:9: note: expanded from macro 'PAIR_ALIGN_DEFINE_GLOBAL_FUNC' pairAlignConfig(options, NeedlemanWunsch(), config); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0110 make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_lcs make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c /<>/apps/pair_align/lib/pair_align_lcs.cpp In file included from /<>/apps/pair_align/lib/pair_align_lcs.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_lcs.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_lcs.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_lcs.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_lcs.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::Tag, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::Tag >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::Tag >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lcs.cpp:41:5: note: in instantiation of function template specialization 'pairAlignConfig, seqan::Tag >' requested here pairAlignConfig(options, seqan::Lcs(), seqan::Nothing()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_lcs.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::Tag, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::Tag >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::Tag >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lcs.cpp:41:5: note: in instantiation of function template specialization 'pairAlignConfig, seqan::Tag >' requested here pairAlignConfig(options, seqan::Lcs(), seqan::Nothing()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_1000 make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_local make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c /<>/apps/pair_align/lib/pair_align_local.cpp In file included from /<>/apps/pair_align/lib/pair_align_local.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_local.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_local.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_local.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_local.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::Tag, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::Tag >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::Tag >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_local.cpp:41:5: note: in instantiation of function template specialization 'pairAlignConfig, seqan::Tag >' requested here pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_local.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/pair_align/lib/pair_align_lib.h:184:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, seqfile.c_str()); ^ /<>/apps/pair_align/lib/pair_align_lib.h:276:5: note: in instantiation of function template specialization 'pairwise_align, seqan::Tag, seqan::Score, seqan::Tag > >, std::__cxx11::basic_string, seqan::Tag, int, std::__cxx11::basic_string >' requested here pairwise_align(sc, seqfile, alg, low, high, banded, outfile); ^ /<>/apps/pair_align/lib/pair_align_lib.h:289:9: note: in instantiation of function template specialization '_initAlignParams, seqan::Score, seqan::Tag > >, seqan::Tag, seqan::Tag >' requested here _initAlignParams(options, sc, alg, spec); ^ /<>/apps/pair_align/lib/pair_align_lib.h:364:36: note: in instantiation of function template specialization '_initScoreMatrix, seqan::Tag >' requested here if (options.alphabet == "dna") _initScoreMatrix(options, Dna5(), alg, spec); ^ /<>/apps/pair_align/lib/pair_align_local.cpp:41:5: note: in instantiation of function template specialization 'pairAlignConfig, seqan::Tag >' requested here pairAlignConfig(options, seqan::SmithWaterman(), seqan::Nothing()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_lcs make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/param_chooser /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/param_chooser /<>/obj-x86_64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target test_funcs_param_chooser make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /<>/apps/param_chooser/test_param_chooser.cpp In file included from /<>/apps/param_chooser/test_param_chooser.cpp:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/param_chooser/test_param_chooser.cpp:47: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/param_chooser/test_param_chooser.cpp:47: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/param_chooser/test_param_chooser.cpp:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/param_chooser/test_param_chooser.cpp:47: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/param_chooser/../splazers/razers.h:604:7: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, fname) || atEnd(seqFile)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/param_chooser/test_param_chooser.cpp:47: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/param_chooser/../splazers/razers.h:609:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(fastaId, seq, seqFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/param_chooser/test_param_chooser.cpp:47: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:264:15: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn reader(file); ^ /<>/apps/param_chooser/test_param_chooser.cpp:97:5: note: in instantiation of function template specialization 'seqan::qualityDistributionFromFastQFile, seqan::String > >' requested here qualityDistributionFromFastQFile(ss, qualDist, pmOptions); ^ /<>/apps/param_chooser/test_param_chooser.cpp:172:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_param_chooser_quality_distribution_from_fastq_file' requested here SEQAN_CALL_TEST(test_param_chooser_quality_distribution_from_fastq_file); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :36:1: note: expanded from here SEQAN_TEST_test_param_chooser_quality_distribution_from_fastq_file ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 7 warnings generated. [ 2%] Linking CXX executable ../../bin/test_funcs_param_chooser cd /<>/obj-x86_64-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target test_funcs_param_chooser make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/param_chooser /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/param_chooser /<>/obj-x86_64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target param_chooser make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /<>/apps/param_chooser/param_chooser.cpp In file included from /<>/apps/param_chooser/param_chooser.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/param_chooser/../splazers/razers.h:604:7: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, fname) || atEnd(seqFile)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/param_chooser/../splazers/razers.h:609:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(fastaId, seq, seqFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:32: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:264:15: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn reader(file); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:314:13: note: in instantiation of function template specialization 'seqan::qualityDistributionFromFastQFile, seqan::String > >' requested here qualityDistributionFromFastQFile(filestrm, avg_act, pm_options); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:1074:4: note: in instantiation of function template specialization 'seqan::getAvgFromPrbDirectory > >' requested here getAvgFromPrbDirectory(pm_options.fname[0],errorDistribution,pm_options); ^ /<>/apps/param_chooser/param_chooser.cpp:339:9: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here chooseParams(r_options, pm_options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:34: In file included from /<>/apps/param_chooser/../splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/param_chooser/../splazers/razers.h:1625:27: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/param_chooser/../splazers/razers.h:2150:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); ^ /<>/apps/param_chooser/../splazers/razers.h:2239:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift()); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:712:5: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, int, seqan::RazerSSpec >' requested here mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:1079:3: note: in instantiation of function template specialization 'seqan::makeSelectedStatsFile > >' requested here makeSelectedStatsFile(errorDistribution,pm_options); ^ /<>/apps/param_chooser/param_chooser.cpp:339:9: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here chooseParams(r_options, pm_options); ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:34: In file included from /<>/apps/param_chooser/../splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/param_chooser/../splazers/razers.h:1625:27: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/param_chooser/../splazers/razers.h:2150:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); ^ /<>/apps/param_chooser/../splazers/razers.h:2242:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:712:5: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, int, seqan::RazerSSpec >' requested here mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:1079:3: note: in instantiation of function template specialization 'seqan::makeSelectedStatsFile > >' requested here makeSelectedStatsFile(errorDistribution,pm_options); ^ /<>/apps/param_chooser/param_chooser.cpp:339:9: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here chooseParams(r_options, pm_options); ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:34: In file included from /<>/apps/param_chooser/../splazers/razers.h:30: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/param_chooser/../splazers/razers.h:2150:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); ^ /<>/apps/param_chooser/../splazers/razers.h:2242:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:712:5: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, int, seqan::RazerSSpec >' requested here mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:1079:3: note: in instantiation of function template specialization 'seqan::makeSelectedStatsFile > >' requested here makeSelectedStatsFile(errorDistribution,pm_options); ^ /<>/apps/param_chooser/param_chooser.cpp:339:9: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here chooseParams(r_options, pm_options); ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:39: In file included from /<>/apps/param_chooser/../splazers/paramChooser.h:34: In file included from /<>/apps/param_chooser/../splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/param_chooser/../splazers/razers.h:1625:27: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/param_chooser/../splazers/razers.h:2150:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); ^ /<>/apps/param_chooser/../splazers/razers.h:2245:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:712:5: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, int, seqan::RazerSSpec >' requested here mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:1079:3: note: in instantiation of function template specialization 'seqan::makeSelectedStatsFile > >' requested here makeSelectedStatsFile(errorDistribution,pm_options); ^ /<>/apps/param_chooser/param_chooser.cpp:339:9: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here chooseParams(r_options, pm_options); ^ In file included from /<>/apps/param_chooser/param_chooser.cpp:37: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: In file included from /<>/include/seqan/modifier/cyclic_shape.h:41: /<>/include/seqan/index/shape_gapped.h:281:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::GappedShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::GappedShape > >' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/param_chooser/../splazers/razers.h:2150:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift()); ^ /<>/apps/param_chooser/../splazers/razers.h:2245:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:712:5: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, int, int, seqan::RazerSSpec >' requested here mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions); ^ /<>/apps/param_chooser/../splazers/paramChooser.h:1079:3: note: in instantiation of function template specialization 'seqan::makeSelectedStatsFile > >' requested here makeSelectedStatsFile(errorDistribution,pm_options); ^ /<>/apps/param_chooser/param_chooser.cpp:339:9: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here chooseParams(r_options, pm_options); ^ 6 warnings generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_local make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_do_search make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /<>/apps/rabema/do_search.cpp 12 warnings generated. [ 3%] Linking CXX executable ../../bin/param_chooser cd /<>/obj-x86_64-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target param_chooser make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_evaluate make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /<>/apps/rabema/rabema_evaluate.cpp In file included from /<>/apps/rabema/do_search.cpp:8: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rabema/do_search.cpp:8: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/rabema/do_search.cpp:8: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/rabema/do_search.cpp:8: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rabema/rabema_evaluate.cpp:28: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rabema/rabema_evaluate.cpp:28: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rabema/rabema_evaluate.cpp:28: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/apps/rabema/rabema_evaluate.cpp:1342:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(inGsi, toCString(options.inGsiPath))) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/rabema/rabema_evaluate.cpp:28: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/apps/rabema/rabema_evaluate.cpp:1342:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(inGsi, toCString(options.inGsiPath))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/rabema/rabema_evaluate.cpp:29: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1441:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1502:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, unsigned int>' requested here findIntervals(result, it.g, it.pm, query); ^ /<>/apps/rabema/rabema_evaluate.cpp:644:9: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(queryResult, intervalTrees[seqId], lastPos); ^ /<>/apps/rabema/rabema_evaluate.cpp:1003:23: note: in instantiation of function template specialization 'benchmarkReadResult >' requested here int res = benchmarkReadResult(result, currentSamRecords, bamFileIn, currentGsiRecords, ^ /<>/apps/rabema/rabema_evaluate.cpp:1401:15: note: in instantiation of function template specialization 'compareAlignedReadsToReference, std::char_traits >, seqan::StreamIterator > >, seqan::Tag >' requested here res = compareAlignedReadsToReference(result, bamFileIn, faiIndex, refSeqs, ^ 4 warnings generated. [ 3%] Linking CXX executable ../../bin/rabema_do_search cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target rabema_do_search make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_build_gold_standard make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /<>/apps/rabema/rabema_build_gold_standard.cpp In file included from /<>/apps/rabema/rabema_build_gold_standard.cpp:35: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rabema/rabema_build_gold_standard.cpp:35: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/rabema/rabema_build_gold_standard.cpp:35: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/rabema/rabema_build_gold_standard.cpp:35: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rabema/rabema_build_gold_standard.cpp:35: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/rabema/rabema_build_gold_standard.cpp:341:48: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here GsiRecord gsiRecord(CharString(prefix(readNameStore[readId], length(readNameStore[readId]) - 2)), flags, ^ /<>/apps/rabema/rabema_build_gold_standard.cpp:1231:5: note: in instantiation of function template specialization 'intervalizeAndDumpErrorCurves, std::char_traits > >' requested here intervalizeAndDumpErrorCurves(gsiStream, errorCurves, readAlignmentDistances, readNameStore, ^ 5 warnings generated. [ 3%] Linking CXX executable ../../bin/rabema_evaluate cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target rabema_evaluate make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_prepare_sam make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /<>/apps/rabema/prepare_sam.cpp 5 warnings generated. [ 3%] Linking CXX executable ../../bin/rabema_build_gold_standard cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -lz -lbz2 In file included from /<>/apps/rabema/prepare_sam.cpp:29: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rabema/prepare_sam.cpp:29: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/rabema/prepare_sam.cpp:29: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/rabema/prepare_sam.cpp:29: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target rabema_build_gold_standard make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers /<>/obj-x86_64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= Scanning dependencies of target razers make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/razers.cpp.o -c /<>/apps/razers/razers.cpp In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/razers/razers.cpp:622:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here success = open(options.readFile, toCString(readFileNames[0])); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:673:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::False>' requested here return _open(file, stream, _mapFileFormatToCompressionFormat(file.format), False()); ^ /<>/apps/razers/razers.cpp:624:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void, std::basic_istream >' requested here success = open(options.readFile, std::cin); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/apps/razers/paramChooser.h:270:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String > >' requested here readRecord(fastaId, seq, qual, reader); ^ /<>/apps/razers/paramChooser.h:316:13: note: in instantiation of function template specialization 'seqan::qualityDistributionFromFastQFile, seqan::String > >' requested here qualityDistributionFromFastQFile(filestrm, avg_act, pm_options); ^ /<>/apps/razers/paramChooser.h:1248:13: note: in instantiation of function template specialization 'seqan::getAvgFromPrbDirectory > >' requested here getAvgFromPrbDirectory(pm_options.fname[0], errorDistribution, pm_options); ^ /<>/apps/razers/razers.cpp:677:18: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here if (!chooseParams(options,pm_options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers/razers.cpp:50: In file included from /<>/apps/razers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers/razers_matepairs.h:375:28: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSetL = host(host(swiftPatternL)); ^ /<>/apps/razers/razers_matepairs.h:777:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2203:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2265:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/razers/razers.cpp:50: In file included from /<>/apps/razers/razers.h:30: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers/razers.h:1666:27: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2265:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/razers/razers.cpp:50: In file included from /<>/apps/razers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers/razers_matepairs.h:375:28: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSetL = host(host(swiftPatternL)); ^ /<>/apps/razers/razers_matepairs.h:777:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2203:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2268:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/razers/razers.cpp:50: In file included from /<>/apps/razers/razers.h:30: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/razers/razers_matepairs.h:777:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2203:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2268:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/razers/razers.cpp:50: In file included from /<>/apps/razers/razers.h:30: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers/razers.h:1666:27: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2268:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/razers/razers.cpp:50: In file included from /<>/apps/razers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers/razers_matepairs.h:375:28: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSetL = host(host(swiftPatternL)); ^ /<>/apps/razers/razers_matepairs.h:777:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2203:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2271:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/razers/razers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: In file included from /<>/include/seqan/modifier/cyclic_shape.h:41: /<>/include/seqan/index/shape_gapped.h:281:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::GappedShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::GappedShape > >' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/razers/razers_matepairs.h:777:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2203:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2271:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/razers/razers.cpp:50: In file included from /<>/apps/razers/razers.h:30: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers/razers.h:1666:27: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/razers/razers.h:2271:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/razers/razers.cpp:209:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/razers/razers.cpp:697:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ 4 warnings generated. [ 3%] Linking CXX executable ../../bin/rabema_prepare_sam cd /<>/obj-x86_64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target rabema_prepare_sam make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers3 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers3 /<>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_quality2prob make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /<>/apps/razers3/quality2prob.cpp In file included from /<>/apps/razers3/quality2prob.cpp:5: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers3/quality2prob.cpp:5: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/razers3/quality2prob.cpp:5: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/quality2prob.cpp:5: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers3/quality2prob.cpp:5: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/razers3/quality2prob.cpp:42:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/quality2prob.cpp:5: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, qual, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/apps/razers3/razers.h:686:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String > >' requested here readRecord(seqId, seq, qual, seqFile); ^ /<>/apps/razers3/quality2prob.cpp:42:56: note: in instantiation of function template specialization 'seqan::loadReads, seqan::RazerSOptions > >' requested here if (!open(seqFileIn, toCString(readsFilename)) || !loadReads(store, seqFileIn, options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 4%] Linking CXX executable ../../bin/razers3_quality2prob cd /<>/obj-x86_64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target razers3_quality2prob make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers3 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers3 /<>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_simulate_reads make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /<>/apps/razers3/simulate_reads.cpp In file included from /<>/apps/razers3/simulate_reads.cpp:6: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers3/simulate_reads.cpp:6: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/razers3/simulate_reads.cpp:6: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/simulate_reads.cpp:6: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers3/simulate_reads.cpp:6: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/apps/razers3/simulate_reads.cpp:120:10: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here if (!loadContigs(store, toCString(referenceFile))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/simulate_reads.cpp:6: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/apps/razers3/simulate_reads.cpp:120:10: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here if (!loadContigs(store, toCString(referenceFile))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 15 warnings generated. [ 4%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /<>/apps/razers/param_tabs.cpp [ 4%] Linking CXX executable ../../bin/razers cd /<>/obj-x86_64-linux-gnu/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target razers make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers3 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers3 /<>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= Scanning dependencies of target razers3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/razers.cpp.o -c /<>/apps/razers3/razers.cpp In file included from /<>/apps/razers3/razers.cpp:61: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers3/razers.cpp:63: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/razers3/razers.cpp:63: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/razers.cpp:61: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/razers3/razers.cpp:63: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/razers3/razers.cpp:785:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here success = open(options.readFile, toCString(readFileNames[0])); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/razers.cpp:63: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:673:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::False>' requested here return _open(file, stream, _mapFileFormatToCompressionFormat(file.format), False()); ^ /<>/apps/razers3/razers.cpp:787:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void, std::basic_istream >' requested here success = open(options.readFile, std::cin); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/razers.cpp:63: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/apps/razers3/paramChooser.h:271:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String > >' requested here readRecord(fastaId, seq, qual, reader); ^ /<>/apps/razers3/paramChooser.h:317:13: note: in instantiation of function template specialization 'seqan::qualityDistributionFromFastQFile, seqan::String > >' requested here qualityDistributionFromFastQFile(filestrm, avg_act, pm_options); ^ /<>/apps/razers3/paramChooser.h:1249:13: note: in instantiation of function template specialization 'seqan::getAvgFromPrbDirectory > >' requested here getAvgFromPrbDirectory(pm_options.fname[0], errorDistribution, pm_options); ^ /<>/apps/razers3/razers.cpp:839:18: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here if (!chooseParams(options, pm_options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/razers3/razers.h:3376:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, ungapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/find_pigeonhole.h:518:35: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here indexShape(host(pattern)) = pattern.shape; ^ /<>/apps/razers3/razers.h:2785:9: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, double, void>' requested here _patternInit(filterPattern, options.errorRate); ^ /<>/apps/razers3/razers_matepairs.h:1088:5: note: in instantiation of function template specialization 'seqan::_applyFilterOptions, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, void, seqan::RazerSCoreOptions > >' requested here _applyFilterOptions(filterPatternL, options); ^ /<>/apps/razers3/razers.h:3252:16: note: in instantiation of function template specialization 'seqan::_mapMatePairReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_, seqan::Pigeonhole >' requested here return _mapMatePairReads(store, cnts, options, Shape(), mode, Pigeonhole()); ^ /<>/apps/razers3/razers.h:3340:20: note: in instantiation of function template specialization 'seqan::_mapMatePairReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_>' requested here return _mapMatePairReads(store, cnts, options, shape, mode); ^ /<>/apps/razers3/razers.h:3376:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, ungapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers3/razers.h:2795:60: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::cout << " stepsize: " << getStepSize(host(filterPattern)) << std::endl; ^ /<>/apps/razers3/razers.h:3376:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, ungapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/razers3/razers.h:3376:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, ungapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/razers3/razers.h:2795:60: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::cout << " stepsize: " << getStepSize(host(filterPattern)) << std::endl; ^ /<>/apps/razers3/razers.h:3376:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, ungapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:118:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:889:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:924:13: note: in instantiation of function template specialization 'seqan::assignValue, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assignValue(target_, value(source_)); ^ /<>/include/seqan/basic/holder_tristate.h:123:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(*this, source_); ^ /<>/include/seqan/find/find_pattern_base.h:65:7: note: in instantiation of member function 'seqan::Holder, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Tag >::Holder' requested here class Pattern; ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TConstructor::construct(it, std::forward(param_)); ^ /<>/apps/razers3/razers.h:3376:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, ungapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:118:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:889:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:924:13: note: in instantiation of function template specialization 'seqan::assignValue, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assignValue(target_, value(source_)); ^ /<>/include/seqan/basic/holder_tristate.h:123:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(*this, source_); ^ /<>/include/seqan/find/find_pattern_base.h:65:7: note: in instantiation of member function 'seqan::Holder, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >::Holder' requested here class Pattern; ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TConstructor::construct(it, std::forward(param_)); ^ /<>/apps/razers3/razers.h:3376:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, ungapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ 6 warnings generated. [ 4%] Linking CXX executable ../../bin/razers3_simulate_reads cd /<>/obj-x86_64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 In file included from /<>/apps/razers3/razers.cpp:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: In file included from /<>/include/seqan/modifier/cyclic_shape.h:41: /<>/include/seqan/index/shape_gapped.h:281:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::GappedShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/find_swift.h:752:23: note: in implicit copy assignment operator for 'seqan::Shape, seqan::GappedShape > >' first required here pattern.shape = indexShape(host(pattern)); ^ /<>/apps/razers3/razers.h:2896:5: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, double, int, seqan::Tag > >' requested here _patternInit(filterPattern, options.errorRate, 0); ^ /<>/apps/razers3/razers_matepairs.h:1088:5: note: in instantiation of function template specialization 'seqan::_applyFilterOptions, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::RazerSCoreOptions > >' requested here _applyFilterOptions(filterPatternL, options); ^ /<>/apps/razers3/razers.h:3247:16: note: in instantiation of function template specialization 'seqan::_mapMatePairReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_, seqan::Swift >' requested here return _mapMatePairReads(store, cnts, options, shape, mode, Swift()); ^ /<>/apps/razers3/razers.h:3340:20: note: in instantiation of function template specialization 'seqan::_mapMatePairReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_>' requested here return _mapMatePairReads(store, cnts, options, shape, mode); ^ /<>/apps/razers3/razers.h:3381:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, gapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -lz -lbz2 In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/razers3/razers.h:3381:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, gapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/razers3/razers.h:3381:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, gapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target razers3_simulate_reads [ 4%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /<>/apps/razers3/param_tabs.cpp In file included from /<>/apps/razers3/razers.cpp:74: In file included from /<>/apps/razers3/razers.h:34: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:118:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:889:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:924:13: note: in instantiation of function template specialization 'seqan::assignValue, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assignValue(target_, value(source_)); ^ /<>/include/seqan/basic/holder_tristate.h:123:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(*this, source_); ^ /<>/include/seqan/find/find_pattern_base.h:65:7: note: in instantiation of member function 'seqan::Holder, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >::Holder' requested here class Pattern; ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TConstructor::construct(it, std::forward(param_)); ^ /<>/apps/razers3/razers.h:3381:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, gapped, mode); ^ /<>/apps/razers3/razers.h:3396:16: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.h:3422:24: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSGlobal, seqan::RazerSGapped, seqan::NMatchesAll_>' requested here return _mapReads(store, cnts, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:235:17: note: in instantiation of function template specialization 'seqan::_mapReads, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = _mapReads(store, stats, (RazerSCoreOptions&)options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ In file included from /<>/apps/razers3/razers.cpp:63: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/razers3/outputFormat.h:672:13: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) ^ /<>/include/seqan/parallel/parallel_macros.h:88:31: note: expanded from macro 'SEQAN_OMP_PRAGMA' #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) ^ /<>/include/seqan/parallel/parallel_macros.h:87:30: note: expanded from macro 'SEQAN_DO_PRAGMA' #define SEQAN_DO_PRAGMA(x) _Pragma(# x) ^ :198:49: note: expanded from here omp parallel for private (intBuf) firstprivate(align) ^ /<>/apps/razers3/outputFormat.h:1301:16: note: in instantiation of function template specialization 'seqan::dumpMatches, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSMode >' requested here return dumpMatches(store, stats, readFName, options, RazerSMode()); ^ /<>/apps/razers3/outputFormat.h:1345:20: note: in instantiation of function template specialization 'seqan::dumpMatches, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::RazerSLocal, seqan::RazerSGapped, seqan::NMatchesNone_>' requested here return dumpMatches(store, stats, readFName, options, RazerSMode()); ^ /<>/apps/razers3/razers.cpp:257:9: note: in instantiation of function template specialization 'seqan::dumpMatches, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here dumpMatches(store, stats, readFileNames[0], options); ^ /<>/apps/razers3/razers.cpp:866:18: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, options); ^ make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rep_sep /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rep_sep /<>/obj-x86_64-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= Scanning dependencies of target rep_sep make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/rep_sep && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /<>/apps/rep_sep/rep_sep.cpp In file included from /<>/apps/rep_sep/rep_sep.cpp:27: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rep_sep/rep_sep.cpp:27: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/rep_sep/rep_sep.cpp:27: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/rep_sep/rep_sep.cpp:27: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/rep_sep/rep_sep.cpp:27: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_io.h:273:65: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here matePairEl.readId[0] = lexicalCast(prefix(buffer, comma)); ^ /<>/apps/rep_sep/rep_sep.cpp:160:5: note: in instantiation of function template specialization 'seqan::read, void, seqan::FragmentStoreConfig >' requested here read(fragStore, strmReads, Amos()); ^ In file included from /<>/apps/rep_sep/rep_sep.cpp:27: In file included from /<>/include/seqan/arg_parse.h:44: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:361:18: note: in implicit copy assignment operator for 'seqan::Triple' first required here *__result = std::move(*__first); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:404:22: note: in instantiation of function template specialization 'std::__copy_move::__copy_m *, seqan::Triple *>' requested here _Category>::__copy_m(__first, __last, __result); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:441:8: note: in instantiation of function template specialization 'std::__copy_move_a *, seqan::Triple *>' requested here std::__copy_move_a<_IsMove>(std::__niter_base(__first), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:505:19: note: in instantiation of function template specialization 'std::__copy_move_a2 *, seqan::Triple *>' requested here return std::__copy_move_a2(std::__miter_base(__first), ^ /<>/include/seqan/basic/array_construct_destruct.h:760:10: note: in instantiation of function template specialization 'std::move *, seqan::Triple *>' requested here std::move(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1188:5: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayMoveForwardDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/sequence/string_base.h:1237:56: note: in instantiation of function template specialization 'seqan::_clearSpace, seqan::Alloc, unsigned long, unsigned long, seqan::TagGenerous_>' requested here typename Size::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand()); ^ /<>/include/seqan/sequence/string_base.h:1287:35: note: in instantiation of function template specialization 'seqan::AppendString_ >::append_, seqan::Alloc >, const seqan::Triple >' requested here AppendString_ >::append_(target, source); ^ /<>/include/seqan/sequence/sequence_interface.h:903:5: note: in instantiation of function template specialization 'seqan::append, seqan::Alloc, seqan::Triple, seqan::TagGenerous_>' requested here append(target, source, typename DefaultOverflowImplicit::Type()); ^ /<>/apps/rep_sep/assembly_parser.h:197:13: note: in instantiation of function template specialization 'seqan::append, seqan::Alloc > &, seqan::Triple >' requested here append(column, TAssignedReadChar(_sequenceCharacter(gapped_read[p - offset]), iter_cr->readId, _positionInRead(gapped_read[p - offset]))); ^ /<>/apps/rep_sep/rep_sep.cpp:203:5: note: in instantiation of function template specialization 'parseContig, int, seqan::Pair, seqan::Alloc >, void>, SimpleColumn>' requested here parseContig(fragStore, options.contig, candidates, algoSpec); ^ In file included from /<>/apps/rep_sep/rep_sep.cpp:34: In file included from /<>/apps/rep_sep/rgraph.h:32: /<>/apps/rep_sep/rgraph_base.h:44:5: warning: definition of implicit copy assignment operator for 'GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned long>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] GraphCargo(GraphCargo const& other) ^ /<>/include/seqan/basic/fundamental_transport.h:118:12: note: in implicit copy assignment operator for 'GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned long>' first required here target = source; ^ /<>/include/seqan/sequence/sequence_interface.h:702:5: note: in instantiation of function template specialization 'seqan::assign, seqan::AlignedReadStoreElement, void>, unsigned long>, GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned long> >' requested here assign(value(me, pos), _value); ^ /<>/include/seqan/graph_types/property_map_generic.h:186:5: note: in instantiation of function template specialization 'seqan::assignValue, seqan::AlignedReadStoreElement, void>, unsigned long>, seqan::Alloc >, GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned long>, unsigned int>' requested here assignValue(pm, _getId(d), val); ^ /<>/apps/rep_sep/rgraph_base.h:191:9: note: in instantiation of function template specialization 'seqan::assignProperty, seqan::AlignedReadStoreElement, void>, unsigned long>, seqan::Alloc >, unsigned int, GraphCargo, seqan::AlignedReadStoreElement, void>, unsigned long> >' requested here assignProperty(me.vertexCargo, vd, new_cargo); ^ /<>/apps/rep_sep/rgraph_construction.h:82:47: note: in instantiation of function template specialization 'registerRead, seqan::AlignedReadStoreElement, void>, unsigned long>' requested here TGraphCargo & new_cargo = registerRead(me, _readId(value(colIter))); ^ /<>/apps/rep_sep/rep_sep.cpp:217:5: note: in instantiation of function template specialization 'construct, seqan::AlignedReadStoreElement, void>, unsigned long, void, seqan::FragmentStoreConfig, int>' requested here construct(rgraph, candidates, fragStore, options.contig); ^ 7 warnings generated. [ 4%] Linking CXX executable ../../bin/rep_sep cd /<>/obj-x86_64-linux-gnu/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target rep_sep make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/sak /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/sak /<>/obj-x86_64-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= Scanning dependencies of target sak make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/sak && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sak.dir/sak.cpp.o -c /<>/apps/sak/sak.cpp In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/sak/sak.cpp:337:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here openRes = open(inFile, toCString(options.inFastxPath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:673:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::False>' requested here return _open(file, stream, _mapFileFormatToCompressionFormat(file.format), False()); ^ /<>/apps/sak/sak.cpp:339:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void, std::basic_istream >' requested here openRes = open(inFile, std::cin); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 11 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, qual, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/apps/sak/sak.cpp:387:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String > >' requested here readRecord(id, seq, quals, inFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/sak/sak.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/apps/sak/sak.cpp:405:14: note: in instantiation of function template specialization 'seqan::startsWith >, seqan::String > >' requested here if (!startsWith(id, options.readPattern)) ^ 8 warnings generated. [ 4%] Linking CXX executable ../../bin/sak cd /<>/obj-x86_64-linux-gnu/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target sak make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/sam2matrix /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/sam2matrix /<>/obj-x86_64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= Scanning dependencies of target sam2matrix make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/sam2matrix && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /<>/apps/sam2matrix/sam2matrix.cpp In file included from /<>/apps/sam2matrix/sam2matrix.cpp:42: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/sam2matrix/sam2matrix.cpp:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/sam2matrix/sam2matrix.cpp:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/sam2matrix/sam2matrix.cpp:42: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/sam2matrix/sam2matrix.cpp:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/apps/sam2matrix/sam2matrix.cpp:145:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn seqStream(toCString(options.readNameFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/sam2matrix/sam2matrix.cpp:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/sam2matrix/sam2matrix.cpp:150:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(id, seq, seqStream); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 4%] Linking CXX executable ../../bin/sam2matrix cd /<>/obj-x86_64-linux-gnu/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target sam2matrix make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/samcat /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/samcat /<>/obj-x86_64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= Scanning dependencies of target samcat make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/samcat && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/samcat.dir/samcat.cpp.o -c /<>/apps/samcat/samcat.cpp In file included from /<>/apps/samcat/samcat.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/samcat/samcat.cpp:37: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/samcat/samcat.cpp:37: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/samcat/samcat.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/samcat/samcat.cpp:37: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:673:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::False>' requested here return _open(file, stream, _mapFileFormatToCompressionFormat(file.format), False()); ^ /<>/apps/samcat/samcat.cpp:92:23: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void, std::basic_istream >' requested here success = open(*readerPtr[i], std::cin); ^ /<>/apps/samcat/samcat.cpp:258:5: note: in instantiation of function template specialization 'catBamFiles, seqan::Tag, void> >' requested here catBamFiles(writer, options.inFiles, options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/samcat/samcat.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/samcat/samcat.cpp:129:38: note: in instantiation of function template specialization 'seqan::prefix >, unsigned int>' requested here writeRecords(writer, prefix(records, size)); ^ /<>/apps/samcat/samcat.cpp:258:5: note: in instantiation of function template specialization 'catBamFiles, seqan::Tag, void> >' requested here catBamFiles(writer, options.inFiles, options); ^ 6 warnings generated. [ 4%] Linking CXX executable ../../bin/samcat cd /<>/obj-x86_64-linux-gnu/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target samcat make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/searchjoin /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/searchjoin /<>/obj-x86_64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= Scanning dependencies of target s4_join make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_join.dir/join.cpp.o -c /<>/apps/searchjoin/join.cpp In file included from /<>/apps/searchjoin/join.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc > >, seqan::Owner > >, seqan::Tag, seqan::TopDown >' requested here goRoot(*this); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_sa_stree.h:112:8: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here struct VertexSA : public VertexEsa ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc > >, seqan::Owner > >, seqan::Tag, seqan::TopDown >' requested here goRoot(*this); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:319:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:332:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:332:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:332:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:332:28: note: in instantiation of function template specialization 'runJoiner, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:357:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:357:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:357:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:357:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot > >, seqan::Owner > >, seqan::Tag, seqan::TopDown >' requested here goRoot(*this); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:357:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:370:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:370:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:370:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact()); ^ In file included from /<>/apps/searchjoin/join.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:355:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, seqan::Exact()); ^ /<>/apps/searchjoin/join.cpp:264:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag > >' requested here index(joiner); ^ /<>/apps/searchjoin/join.cpp:370:28: note: in instantiation of function template specialization 'runJoiner > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact()); ^ 19 warnings generated. [ 4%] Linking CXX executable ../../bin/razers3 cd /<>/obj-x86_64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target razers3 make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/searchjoin /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/searchjoin /<>/obj-x86_64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= Scanning dependencies of target s4_search make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 4%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_search.dir/search.cpp.o -c /<>/apps/searchjoin/search.cpp In file included from /<>/apps/searchjoin/search.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc > >, seqan::Owner > >, seqan::Tag, seqan::TopDown >' requested here goRoot(*this); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_sa_stree.h:112:8: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here struct VertexSA : public VertexEsa ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc > >, seqan::Owner > >, seqan::Tag, seqan::TopDown >' requested here goRoot(*this); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:516:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:524:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:524:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:524:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:282:5: note: in instantiation of function template specialization 'index, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:524:28: note: in instantiation of function template specialization 'runSearcher, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag >' requested here return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing()); ^ In file included from /<>/apps/searchjoin/search.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:544:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:544:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:544:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:544:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot > >, seqan::Owner > >, seqan::Tag, seqan::TopDown >' requested here goRoot(*this); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:544:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:61: In file included from /<>/apps/searchjoin/db.h:43: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index > >, seqan::Owner > >, seqan::IndexSa > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/apps/searchjoin/db.h:764:19: note: in implicit copy assignment operator for 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' first required here dbIndex.index = TIndex(db.text); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:552:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:552:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:552:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); ^ In file included from /<>/apps/searchjoin/search.cpp:56: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration > >, seqan::Owner > >, seqan::Tag >' requested here _indexRequireTopDownIteration(_index); ^ /<>/apps/searchjoin/db.h:816:15: note: in instantiation of member function 'seqan::Iter > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::Iter' requested here TIterator it(dbIndex.index); ^ /<>/apps/searchjoin/finder.h:344:5: note: in instantiation of function template specialization 'build > >, seqan::Owner > >, seqan::IndexSa >, void, void, seqan::Tag >' requested here build(dbFinder.dbIndex, dbFinder.db, Default()); ^ /<>/apps/searchjoin/search.cpp:405:5: note: in instantiation of function template specialization 'index > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >' requested here index(searcher); ^ /<>/apps/searchjoin/search.cpp:552:28: note: in instantiation of function template specialization 'runSearcher > >, seqan::Owner > >, seqan::Tag, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > > >' requested here return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online()); ^ 23 warnings generated. [ 5%] Linking CXX executable ../../bin/s4_join cd /<>/obj-x86_64-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 5%] Built target s4_join make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/seqan_tcoffee /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/seqan_tcoffee /<>/obj-x86_64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_tcoffee make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 5%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/seqan_tcoffee && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp In file included from /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: In file included from /<>/include/seqan/graph_msa.h:40: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent >, unsigned long, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:191:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:178:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag >' requested here buildAlignmentGraph(matches, g, FrequencyCounting()); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:281:9: note: in instantiation of function template specialization 'seqan::evaluateAlignment, seqan::Score, seqan::Tag > > >' requested here evaluateAlignment(msaOpt); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:9: note: in instantiation of function template specialization '_initMsaParams, seqan::Score, seqan::Tag > > >' requested here _initMsaParams(parser, sc); ^ In file included from /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(inFile, fileName)) ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str()); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:9: note: in instantiation of function template specialization 'customizedMsaAlignment, seqan::Score, seqan::Tag > > >' requested here customizedMsaAlignment(msaOpt); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:9: note: in instantiation of function template specialization '_initMsaParams, seqan::Score, seqan::Tag > > >' requested here _initMsaParams(parser, sc); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:51:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void>' requested here readRecords(fastaIDs, sequences, inFile); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:5: note: in instantiation of function template specialization '_loadSequences, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > > >' requested here _loadSequences(sequenceSet, sequenceNames, msaOpt.seqfile.c_str()); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:9: note: in instantiation of function template specialization 'customizedMsaAlignment, seqan::Score, seqan::Tag > > >' requested here customizedMsaAlignment(msaOpt); ^ /<>/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:9: note: in instantiation of function template specialization '_initMsaParams, seqan::Score, seqan::Tag > > >' requested here _initMsaParams(parser, sc); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 23 warnings generated. [ 5%] Linking CXX executable ../../bin/s4_search cd /<>/obj-x86_64-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 5%] Built target s4_search make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/seqcons2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/seqcons2 /<>/obj-x86_64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= Scanning dependencies of target seqcons2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c /<>/apps/seqcons2/seqcons.cpp [ 6%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c /<>/apps/seqcons2/seqcons_app.cpp In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/seqcons2/seqcons_app.cpp:223:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, fileName)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/seqcons2/seqcons_app.cpp:232:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(id, seq, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:48: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/find_pigeonhole.h:518:35: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here indexShape(host(pattern)) = pattern.shape; ^ /<>/include/seqan/consensus/overlap_info_computation.h:370:5: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, double, void>' requested here _patternInit(filterPattern, maxErrorRate); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/apps/seqcons2/seqcons_app.cpp:296:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, caOptions); ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:48: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_pigeonhole.h:463:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/apps/seqcons2/seqcons_app.cpp:296:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, caOptions); ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); ^ /<>/include/seqan/consensus/consensus_builder.h:384:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag, seqan::Score > >' requested here buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); ^ /<>/include/seqan/consensus/consensus_aligner.h:170:17: note: in instantiation of member function 'seqan::ConsensusBuilder_ > >::run' requested here consBuilder.run(store, overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/apps/seqcons2/seqcons_app.cpp:296:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, caOptions); ^ In file included from /<>/apps/seqcons2/seqcons_app.cpp:40: In file included from /<>/include/seqan/realign.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/apps/seqcons2/seqcons_app.cpp:314:9: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, contigID, /*method=*/2, options.reAlignmentBandwidth, /*includeReference=*/false); ^ 7 warnings generated. [ 6%] Linking CXX executable ../../bin/seqan_tcoffee cd /<>/obj-x86_64-linux-gnu/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target seqan_tcoffee make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/sgip /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/sgip /<>/obj-x86_64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= Scanning dependencies of target sgip make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/sgip && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sgip.dir/sgip.cpp.o -c /<>/apps/sgip/sgip.cpp 10 warnings generated. [ 6%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c /<>/apps/seqcons2/seqcons_options.cpp [ 6%] Linking CXX executable ../../bin/sgip cd /<>/obj-x86_64-linux-gnu/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target sgip make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/snp_store /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/snp_store /<>/obj-x86_64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= Scanning dependencies of target snp_store make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/snp_store && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /<>/apps/snp_store/snp_store.cpp [ 6%] Linking CXX executable ../../bin/seqcons2 cd /<>/obj-x86_64-linux-gnu/apps/seqcons2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target seqcons2 make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/splazers /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/splazers /<>/obj-x86_64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= Scanning dependencies of target splazers make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/splazers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/splazers.dir/splazers.cpp.o -c /<>/apps/splazers/splazers.cpp In file included from /<>/apps/snp_store/snp_store.cpp:31: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/snp_store/snp_store.cpp:33: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/snp_store/snp_store.cpp:33: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/snp_store/snp_store.cpp:31: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/splazers/razers.h:604:7: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, fname) || atEnd(seqFile)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/splazers/razers.h:609:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(fastaId, seq, seqFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/splazers/paramChooser.h:264:15: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn reader(file); ^ /<>/apps/splazers/paramChooser.h:314:13: note: in instantiation of function template specialization 'seqan::qualityDistributionFromFastQFile, seqan::String > >' requested here qualityDistributionFromFastQFile(filestrm, avg_act, pm_options); ^ /<>/apps/splazers/paramChooser.h:1074:4: note: in instantiation of function template specialization 'seqan::getAvgFromPrbDirectory > >' requested here getAvgFromPrbDirectory(pm_options.fname[0],errorDistribution,pm_options); ^ /<>/apps/splazers/splazers.cpp:683:10: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here if (!chooseParams(options,pm_options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/snp_store/snp_store.cpp:33: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/snp_store/snp_store.cpp:77:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, toCString(fileNameList[filecount]))) ^ /<>/apps/snp_store/snp_store.cpp:670:45: note: in instantiation of function template specialization 'loadGenomes, seqan::Alloc >, seqan::Owner > >, unsigned long, seqan::StringSet >, seqan::Owner > > >' requested here if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames)) ^ /<>/apps/snp_store/snp_store.cpp:1412:18: note: in instantiation of function template specialization 'detectSNPs >' requested here int result = detectSNPs(options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/snp_store/snp_store.cpp:33: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/snp_store/snp_store.cpp:84:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(temp, seq, seqFileIn); ^ /<>/apps/snp_store/snp_store.cpp:670:45: note: in instantiation of function template specialization 'loadGenomes, seqan::Alloc >, seqan::Owner > >, unsigned long, seqan::StringSet >, seqan::Owner > > >' requested here if(result == CALLSNPS_GENOME_FAILED || !loadGenomes(genomes, genomeFileNameList, gIdStringToIdNumMap, genomeNames)) ^ /<>/apps/snp_store/snp_store.cpp:1412:18: note: in instantiation of function template specialization 'detectSNPs >' requested here int result = detectSNPs(options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/splazers/splazers.cpp:50: In file included from /<>/apps/splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/splazers/razers_spliced.h:2383:29: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSetL &readSetL = host(host(swiftPatternL)); ^ /<>/apps/splazers/razers_spliced.h:2237:5: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers_spliced.h:3039:12: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift()); ^ /<>/apps/splazers/razers.h:2169:16: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/snp_store/snp_store.cpp:31: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/snp_store/snp_store.h:1440:16: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if(prefix(contigNames(context(bamFileIn))[record.rID],3) == "chr") ^ /<>/apps/snp_store/snp_store.cpp:886:30: note: in instantiation of function template specialization 'seqan::readMatchesFromSamBam_Batch >, seqan::String >, seqan::String, seqan::Alloc >, seqan::String, seqan::Alloc >, std::map >, unsigned long, std::less > >, std::allocator >, unsigned long> > >, long, unsigned int, int, seqan::SNPCallingOptions > >' requested here result = readMatchesFromSamBam_Batch(*bamFileIns[j], records[j], fragmentStore, readCounts, readClips, ^ /<>/apps/snp_store/snp_store.cpp:1412:18: note: in instantiation of function template specialization 'detectSNPs >' requested here int result = detectSNPs(options); ^ In file included from /<>/apps/splazers/splazers.cpp:50: In file included from /<>/apps/splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/splazers/razers_spliced.h:2384:29: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSetR &readSetR = host(host(swiftPatternR)); ^ /<>/apps/splazers/razers_spliced.h:2237:5: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers_spliced.h:3041:12: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift()); ^ /<>/apps/splazers/razers.h:2169:16: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/splazers/splazers.cpp:50: In file included from /<>/apps/splazers/razers.h:30: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/splazers/razers_spliced.h:2237:5: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers_spliced.h:3041:12: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift()); ^ /<>/apps/splazers/razers.h:2169:16: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/splazers/splazers.cpp:50: In file included from /<>/apps/splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/splazers/razers_spliced.h:2384:29: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSetR &readSetR = host(host(swiftPatternR)); ^ /<>/apps/splazers/razers_spliced.h:2237:5: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers_spliced.h:3043:12: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift()); ^ /<>/apps/splazers/razers.h:2169:16: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/splazers/splazers.cpp:49: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: In file included from /<>/include/seqan/modifier/cyclic_shape.h:41: /<>/include/seqan/index/shape_gapped.h:281:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::GappedShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::GappedShape > >' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/splazers/razers_spliced.h:2237:5: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers_spliced.h:3043:12: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift()); ^ /<>/apps/splazers/razers.h:2169:16: note: in instantiation of function template specialization 'seqan::mapSplicedReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/splazers/splazers.cpp:50: In file included from /<>/apps/splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/splazers/razers_matepairs.h:652:28: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSetL = host(host(swiftPatternL)); ^ /<>/apps/splazers/razers_matepairs.h:1028:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers.h:2122:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/splazers/razers.h:2184:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/splazers/splazers.cpp:50: In file included from /<>/apps/splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/splazers/razers_matepairs.h:652:28: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSetL = host(host(swiftPatternL)); ^ /<>/apps/splazers/razers_matepairs.h:1028:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers.h:2122:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/splazers/razers.h:2187:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/splazers/splazers.cpp:50: In file included from /<>/apps/splazers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/splazers/razers_matepairs.h:652:28: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSetL = host(host(swiftPatternL)); ^ /<>/apps/splazers/razers_matepairs.h:1028:5: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options); ^ /<>/apps/splazers/razers.h:2122:10: note: in instantiation of function template specialization 'seqan::mapMatePairReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/splazers/razers.h:2190:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/splazers/splazers.cpp:250:14: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options); ^ /<>/apps/splazers/splazers.cpp:717:15: note: in instantiation of function template specialization 'mapReads >' requested here int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ 7 warnings generated. [ 6%] Linking CXX executable ../../bin/snp_store cd /<>/obj-x86_64-linux-gnu/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target snp_store make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/stellar /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/stellar /<>/obj-x86_64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= Scanning dependencies of target stellar make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/stellar && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/stellar.dir/stellar.cpp.o -c /<>/apps/stellar/stellar.cpp In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/stellar/stellar.cpp:241:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(inSeqs, (toCString(fileName)))) ^ /<>/apps/stellar/stellar.cpp:618:10: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here if (!_importSequences(options.queryFile, "query", queries, queryIDs)) ^ /<>/apps/stellar/stellar.cpp:685:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/stellar/stellar.cpp:255:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(id, seq, inSeqs); ^ /<>/apps/stellar/stellar.cpp:618:10: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here if (!_importSequences(options.queryFile, "query", queries, queryIDs)) ^ /<>/apps/stellar/stellar.cpp:685:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/stellar/stellar.cpp:25: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/stellar/stellar.h:674:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:685:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:44: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here matIt2 = matIt - diagonalWidth; ^ /<>/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:5: note: in instantiation of function template specialization 'seqan::_alignBandedSmithWatermanDeclump, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Score >, int>' requested here _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); ^ /<>/include/seqan/align/local_alignment_enumeration_banded.h:109:16: note: in instantiation of function template specialization 'seqan::_localAlignmentNext, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Score >, int>' requested here return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, ^ /<>/include/seqan/align/local_alignment_enumeration_banded.h:121:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/apps/stellar/stellar.h:607:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' requested here while (nextLocalAlignment(localAlign, enumerator)) { ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:685:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:44: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here matIt2 = matIt - diagonalWidth; ^ /<>/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:5: note: in instantiation of function template specialization 'seqan::_alignBandedSmithWatermanDeclump, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Score >, int>' requested here _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); ^ /<>/include/seqan/align/local_alignment_enumeration_banded.h:109:16: note: in instantiation of function template specialization 'seqan::_localAlignmentNext, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Score >, int>' requested here return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, ^ /<>/include/seqan/align/local_alignment_enumeration_banded.h:121:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/apps/stellar/stellar.h:607:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) while (nextLocalAlignment(localAlign, enumerator)) { ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:685:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:26: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/stellar/stellar.h:194:24: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' first required here TAlign ali(align); ^ /<>/apps/stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:685:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:24: In file included from /<>/include/seqan/arg_parse.h:44: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:361:18: note: in implicit copy assignment operator for 'seqan::Triple' first required here *__result = std::move(*__first); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:404:22: note: in instantiation of function template specialization 'std::__copy_move::__copy_m *, seqan::Triple *>' requested here _Category>::__copy_m(__first, __last, __result); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:441:8: note: in instantiation of function template specialization 'std::__copy_move_a *, seqan::Triple *>' requested here std::__copy_move_a<_IsMove>(std::__niter_base(__first), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:505:19: note: in instantiation of function template specialization 'std::__copy_move_a2 *, seqan::Triple *>' requested here return std::__copy_move_a2(std::__miter_base(__first), ^ /<>/include/seqan/basic/array_construct_destruct.h:760:10: note: in instantiation of function template specialization 'std::move *, seqan::Triple *>' requested here std::move(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1188:5: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayMoveForwardDefault(source_begin, source_end, target_begin); ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:685:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:25: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/stellar/stellar.h:674:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:687:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:26: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/stellar/stellar.h:194:24: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' first required here TAlign ali(align); ^ /<>/apps/stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:687:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:25: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/stellar/stellar.h:674:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:689:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:26: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/stellar/stellar.h:194:24: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' first required here TAlign ali(align); ^ /<>/apps/stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:689:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:25: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/stellar/stellar.h:674:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:691:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:26: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/stellar/stellar.h:194:24: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' first required here TAlign ali(align); ^ /<>/apps/stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:691:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:25: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/stellar/stellar.h:674:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:693:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:26: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/stellar/stellar.h:194:24: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' first required here TAlign ali(align); ^ /<>/apps/stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne, seqan::Alloc >, seqan::String >, seqan::Pattern, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll, seqan::Alloc >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:693:9: note: in instantiation of function template specialization 'mainWithOptions >' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:25: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/apps/stellar/stellar.h:674:9: note: in instantiation of function template specialization 'seqan::find >, seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne >, seqan::String >, seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:695:9: note: in instantiation of function template specialization 'mainWithOptions' requested here mainWithOptions(options, String()); ^ In file included from /<>/apps/stellar/stellar.cpp:26: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/stellar/stellar.h:194:24: note: in implicit copy constructor for 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' first required here TAlign ali(align); ^ /<>/apps/stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/stellar/stellar.cpp:56:9: note: in instantiation of function template specialization 'stellar >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop, ^ /<>/apps/stellar/stellar.cpp:174:18: note: in instantiation of function template specialization '_stellarOnOne >, seqan::String >, seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >, seqan::StringSet >, seqan::String > > >, seqan::Owner > > >' requested here if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options)) ^ /<>/apps/stellar/stellar.cpp:655:10: note: in instantiation of function template specialization '_stellarOnAll >, seqan::String > >' requested here if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options)) ^ /<>/apps/stellar/stellar.cpp:695:9: note: in instantiation of function template specialization 'mainWithOptions' requested here mainWithOptions(options, String()); ^ 15 warnings generated. [ 6%] Linking CXX executable ../../bin/splazers cd /<>/obj-x86_64-linux-gnu/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../bin/splazers -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target splazers make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/tree_recon /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/tree_recon /<>/obj-x86_64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= Scanning dependencies of target tree_recon make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/tree_recon && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /<>/apps/tree_recon/tree_recon.cpp In file included from /<>/apps/tree_recon/tree_recon.cpp:19: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/virtual_stream.h:294:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here open(*this, fileName, openMode); ^ /<>/apps/tree_recon/tree_recon.cpp:153:32: note: in instantiation of member function 'seqan::VirtualStream, std::char_traits >::VirtualStream' requested here VirtualStream inPhylip(infile.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/tree_recon/tree_recon.cpp:19: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/virtual_stream.h:294:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here open(*this, fileName, openMode); ^ /<>/apps/tree_recon/tree_recon.cpp:153:32: note: in instantiation of member function 'seqan::VirtualStream, std::char_traits >::VirtualStream' requested here VirtualStream inPhylip(infile.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 2 warnings generated. [ 6%] Linking CXX executable ../../bin/tree_recon cd /<>/obj-x86_64-linux-gnu/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target tree_recon make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/yara /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/yara /<>/obj-x86_64-linux-gnu/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= Scanning dependencies of target yara_mapper make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/yara && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/yara_mapper.dir/mapper.cpp.o -c /<>/apps/yara/mapper.cpp In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/yara/mapper.cpp:59: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/yara/mapper.cpp:59: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/yara/mapper.cpp:59: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 9 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/yara/mapper.cpp:59: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/yara/mapper.cpp:57: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5693:13: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __result = __first; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5743:30: note: in instantiation of function template specialization 'std::__max_element, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Alloc >, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment> > > >' requested here return _GLIBCXX_STD_A::__max_element(__first, __last, ^ /<>/include/seqan/parallel/parallel_algorithms.h:398:23: note: in instantiation of function template specialization 'std::max_element, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::LengthLess, seqan::Alloc >, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment> > >' requested here return value(std::max_element(begin(c, Standard()), end(c, Standard()), p)); ^ /<>/include/seqan/sequence/string_set_base.h:1186:35: note: in instantiation of function template specialization 'seqan::maxElement, seqan::Alloc >, seqan::Owner > >, seqan::LengthLess, seqan::Alloc >, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment> >, seqan::Parallel_>' requested here return empty(me) ? 0 : length(maxElement(me, LengthLess(), tag)); ^ /<>/apps/yara/mapper.h:443:9: note: in instantiation of function template specialization 'seqan::maxLength, seqan::Alloc >, seqan::Owner >, seqan::Parallel_>' requested here if (maxLength(me.reads.seqs, typename TConfig::TThreading()) > MemberLimits::VALUE) ^ /<>/apps/yara/mapper.h:1403:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) loadReads(me); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:57: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5693:13: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __result = __first; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5743:30: note: in instantiation of function template specialization 'std::__max_element, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Alloc >, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment> > > >' requested here return _GLIBCXX_STD_A::__max_element(__first, __last, ^ /<>/include/seqan/parallel/parallel_algorithms.h:398:23: note: in instantiation of function template specialization 'std::max_element, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::LengthLess, seqan::Alloc >, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment> > >' requested here return value(std::max_element(begin(c, Standard()), end(c, Standard()), p)); ^ /<>/include/seqan/sequence/string_set_base.h:1186:35: note: in instantiation of function template specialization 'seqan::maxElement, seqan::Alloc >, seqan::Owner > >, seqan::LengthLess, seqan::Alloc >, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment> >, seqan::Parallel_>' requested here return empty(me) ? 0 : length(maxElement(me, LengthLess(), tag)); ^ /<>/apps/yara/mapper.h:443:9: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (maxLength(me.reads.seqs, typename TConfig::TThreading()) > MemberLimits::VALUE) ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/sequence_interface.h:343:22: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' first required here return TIterator(me, begin(me, Standard())); ^ /<>/include/seqan/sequence/sequence_interface.h:385:12: note: in instantiation of function template specialization 'seqan::_beginDefault, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment> >' requested here return _beginDefault(me, tag_); ^ /<>/include/seqan/parallel/parallel_algorithms.h:244:19: note: in instantiation of function template specialization 'seqan::begin, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>, seqan::Rooted_>' requested here TIter it = begin(c, iterTag) + splitter[i]; ^ /<>/apps/yara/mapper_classifier.h:114:5: note: in instantiation of function template specialization 'seqan::iterate, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>, ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> > >, seqan::Rooted_>' requested here iterate(pairs, me, Rooted(), typename TConfig::TThreading()); ^ /<>/apps/yara/mapper_classifier.h:76:9: note: in instantiation of function template specialization '_classifyReadsImpl, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> > >' requested here _classifyReadsImpl(*this, typename TConfig::TStrategy()); //, typename TConfig::TAnchoring()); ^ /<>/apps/yara/mapper.h:656:17: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TClassifier classifier(me.ctx, me.hits[0], me.seeds[0], me.options); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/bits_bucket.h:188:36: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here assign(stringSetPositions(me), prefix(stringSetLimits(me), length(stringSetLimits(me)) - 1), Exact()); ^ /<>/apps/yara/mapper.h:775:5: note: in instantiation of function template specialization 'seqan::bucket >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::Getter >, const seqan::Tag >, unsigned long, seqan::Tag >' requested here bucket(me.matchesSetByCoord, Getter(), getReadsCount(readSeqs), typename TConfig::TThreading()); ^ /<>/apps/yara/mapper.h:1325:5: note: in instantiation of function template specialization 'aggregateMatches, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3>, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here aggregateMatches(me, readSeqs); ^ /<>/apps/yara/mapper.h:1237:5: note: in instantiation of function template specialization '_mapReadsImpl, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3>, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here _mapReadsImpl(me, me.reads.seqs, typename TConfig::TStrategy()); ^ /<>/apps/yara/mapper.h:1405:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) mapReads(me); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned char, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned char, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned char, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:365:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned char, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned char, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned char, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:365:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:377:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned short, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned short, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned short, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:381:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned short, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned short, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned short, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:381:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned short, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned short, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned short, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:365:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:381:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned short, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned short, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned short, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:365:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:381:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:386:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:360:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:386:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned int, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned int, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned int, unsigned long, unsigned int, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:365:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:386:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ In file included from /<>/apps/yara/mapper.cpp:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/yara/mapper_writer.h:585:17: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, prefix(matches, primaryPos)); ^ /<>/apps/yara/mapper_writer.h:327:9: note: in instantiation of function template specialization '_fillXa, seqan::Tag, seqan::Tag, unsigned int, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::String >, seqan::Alloc >, unsigned long>' requested here _fillXa(me, matches, primaryPos); ^ /<>/apps/yara/mapper_writer.h:236:9: note: in instantiation of function template specialization '_writeMappedRead, seqan::Tag, seqan::Tag, unsigned int, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, unsigned long, Match > >' requested here _writeMappedRead(me, position(it, me.primaryMatches), primary, typename Traits::TSequencing()); ^ /<>/apps/yara/mapper_writer.h:102:9: note: in instantiation of function template specialization '_writeMatchesImpl, seqan::Tag, seqan::Tag, unsigned int, unsigned long, unsigned long, seqan::MMap >, unsigned long> >, 3> >, seqan::Iter >, seqan::Alloc >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > > >' requested here _writeMatchesImpl(*this, it); ^ /<>/include/seqan/parallel/parallel_algorithms.h:248:13: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) f(it); ^ /<>/apps/yara/mapper.cpp:365:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:386:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here configureMapper(options, threading, sequencing, strategy); ^ /<>/apps/yara/mapper.cpp:399:16: note: in instantiation of function template specialization 'configureMapper, seqan::Tag, seqan::Tag >' requested here return configureMapper(options, threading, sequencing, Strata()); ^ /<>/apps/yara/mapper.cpp:413:9: note: in instantiation of function template specialization 'configureMapper, seqan::Tag >' requested here configureMapper(options, threading, SingleEnd()); ^ /<>/apps/yara/mapper.cpp:422:9: note: in instantiation of function template specialization 'configureMapper >' requested here configureMapper(options, Parallel()); ^ 21 warnings generated. [ 6%] Linking CXX executable ../../bin/stellar cd /<>/obj-x86_64-linux-gnu/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target stellar make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/yara /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/yara /<>/obj-x86_64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= Scanning dependencies of target yara_indexer make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/yara && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c /<>/apps/yara/indexer.cpp In file included from /<>/apps/yara/indexer.cpp:49: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/yara/indexer.cpp:50: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/yara/indexer.cpp:50: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/yara/indexer.cpp:49: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/yara/indexer.cpp:49: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/apps/yara/misc_options.h:139:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return prefix(string, firstOf(string, IsDot())); ^ /<>/apps/yara/indexer.cpp:167:36: note: in instantiation of function template specialization 'trimExtension > >' requested here options.contigsIndexFile = trimExtension(options.contigsFile); ^ In file included from /<>/apps/yara/indexer.cpp:50: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/yara/indexer.cpp:195:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(me.contigsFile, toCString(me.options.contigsFile))) ^ /<>/apps/yara/indexer.cpp:357:5: note: in instantiation of function template specialization 'loadContigs' requested here loadContigs(indexer); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/yara/indexer.cpp:50: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > > >, seqan::StringSet, seqan::Packed > >, seqan::Owner > > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/apps/yara/store_seqs.h:179:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > > >, seqan::StringSet, seqan::Packed > >, seqan::Owner > > >, void>' requested here readRecords(me.names, me.seqs, fileIn); ^ /<>/apps/yara/indexer.cpp:200:9: note: in instantiation of function template specialization 'readRecords >, void>' requested here readRecords(me.contigs, me.contigsFile); ^ /<>/apps/yara/indexer.cpp:357:5: note: in instantiation of function template specialization 'loadContigs' requested here loadContigs(indexer); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Packed > >, seqan::Owner > > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5693:13: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Packed > >, seqan::Owner > > >, seqan::CountingIteratorImpl_ > >' first required here __result = __first; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5743:30: note: in instantiation of function template specialization 'std::__max_element, seqan::Packed > >, seqan::Owner > > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Packed > >, seqan::InfixSegment>, seqan::Segment, seqan::Packed > >, seqan::InfixSegment> > > >' requested here return _GLIBCXX_STD_A::__max_element(__first, __last, ^ /<>/include/seqan/parallel/parallel_algorithms.h:398:23: note: in instantiation of function template specialization 'std::max_element, seqan::Packed > >, seqan::Owner > > >, seqan::CountingIteratorImpl_ > >, seqan::LengthLess, seqan::Packed > >, seqan::InfixSegment>, seqan::Segment, seqan::Packed > >, seqan::InfixSegment> > >' requested here return value(std::max_element(begin(c, Standard()), end(c, Standard()), p)); ^ /<>/include/seqan/sequence/string_set_base.h:1186:35: note: in instantiation of function template specialization 'seqan::maxElement, seqan::Packed > >, seqan::Owner > > >, seqan::LengthLess, seqan::Packed > >, seqan::InfixSegment>, seqan::Segment, seqan::Packed > >, seqan::InfixSegment> >, seqan::Serial_>' requested here return empty(me) ? 0 : length(maxElement(me, LengthLess(), tag)); ^ /<>/include/seqan/sequence/string_set_base.h:1193:12: note: in instantiation of function template specialization 'seqan::maxLength, seqan::Packed > >, seqan::Owner > >, seqan::Serial_>' requested here return maxLength(me, Serial()); ^ /<>/apps/yara/misc_options.h:340:32: note: in instantiation of function template specialization 'seqan::maxLength, seqan::Packed > >, seqan::Owner > > >' requested here options.contigsMaxLength = maxLength(seqs); ^ /<>/apps/yara/indexer.cpp:358:5: note: in instantiation of function template specialization 'setContigsLimits, seqan::Packed > >, seqan::Owner > > > >' requested here setContigsLimits(options, indexer.contigs.seqs); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5693:13: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Packed > >, seqan::Owner > > >, seqan::CountingIteratorImpl_ > >' first required here __result = __first; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:5743:30: note: in instantiation of function template specialization 'std::__max_element, seqan::Packed > >, seqan::Owner > > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Packed > >, seqan::InfixSegment>, seqan::Segment, seqan::Packed > >, seqan::InfixSegment> > > >' requested here return _GLIBCXX_STD_A::__max_element(__first, __last, ^ /<>/include/seqan/parallel/parallel_algorithms.h:398:23: note: in instantiation of function template specialization 'std::max_element, seqan::Packed > >, seqan::Owner > > >, seqan::CountingIteratorImpl_ > >, seqan::LengthLess, seqan::Packed > >, seqan::InfixSegment>, seqan::Segment, seqan::Packed > >, seqan::InfixSegment> > >' requested here return value(std::max_element(begin(c, Standard()), end(c, Standard()), p)); ^ /<>/include/seqan/sequence/string_set_base.h:1186:35: note: in instantiation of function template specialization 'seqan::maxElement, seqan::Packed > >, seqan::Owner > > >, seqan::LengthLess, seqan::Packed > >, seqan::InfixSegment>, seqan::Segment, seqan::Packed > >, seqan::InfixSegment> >, seqan::Serial_>' requested here return empty(me) ? 0 : length(maxElement(me, LengthLess(), tag)); ^ /<>/include/seqan/sequence/string_set_base.h:1193:12: note: in instantiation of function template specialization 'seqan::maxLength, seqan::Packed > >, seqan::Owner > >, seqan::Serial_>' requested here return maxLength(me, Serial()); ^ /<>/apps/yara/misc_options.h:340:32: note: in instantiation of function template specialization 'seqan::maxLength, seqan::Packed > >, seqan::Owner > > >' requested here options.contigsMaxLength = maxLength(seqs); ^ /<>/apps/yara/indexer.cpp:358:5: note: in instantiation of function template specialization 'setContigsLimits, seqan::Packed > >, seqan::Owner > > > >' requested here setContigsLimits(options, indexer.contigs.seqs); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:333:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:337:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:337:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:337:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:337:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:337:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:337:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:342:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:342:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:316:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:342:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:342:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:342:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ In file included from /<>/apps/yara/indexer.cpp:48: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/apps/yara/indexer.cpp:267:53: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > > > >, seqan::FMIndex > > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/apps/yara/indexer.cpp:303:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:321:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:342:9: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(me); ^ /<>/apps/yara/indexer.cpp:360:5: note: in instantiation of function template specialization 'saveIndex' requested here saveIndex(indexer); ^ 31 warnings generated. [ 6%] Linking CXX executable ../../bin/yara_indexer cd /<>/obj-x86_64-linux-gnu/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_indexer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_indexer.dir/indexer.cpp.o -o ../../bin/yara_indexer -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target yara_indexer make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_variable_length_avx2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/test_align_simd_global_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx2 -o CMakeFiles/test_align_simd_global_variable_length_avx2.dir/test_align_simd_global_variable_length.cpp.o -c /<>/tests/align/test_align_simd_global_variable_length.cpp In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 22 warnings generated. [ 7%] Linking CXX executable ../../bin/yara_mapper cd /<>/obj-x86_64-linux-gnu/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_mapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_mapper.dir/mapper.cpp.o -o ../../bin/yara_mapper -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target yara_mapper make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_equal_length_avx2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 7%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/test_align_simd_global_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx2 -o CMakeFiles/test_align_simd_global_equal_length_avx2.dir/test_align_simd_global_equal_length.cpp.o -c /<>/tests/align/test_align_simd_global_equal_length.cpp In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 7%] Linking CXX executable ../../bin/test_align_simd_global_variable_length_avx2 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length_avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length_avx2.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length_avx2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target test_align_simd_global_variable_length_avx2 make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_equal_length_avx512_skx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 8%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/test_align_simd_global_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -o CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/test_align_simd_global_equal_length.cpp.o -c /<>/tests/align/test_align_simd_global_equal_length.cpp In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 8%] Linking CXX executable ../../bin/test_align_simd_global_equal_length_avx2 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length_avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length_avx2.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length_avx2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 8%] Built target test_align_simd_global_equal_length_avx2 make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_equal_length_sse4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 9%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/test_align_simd_local_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -msse4 -o CMakeFiles/test_align_simd_local_equal_length_sse4.dir/test_align_simd_local_equal_length.cpp.o -c /<>/tests/align/test_align_simd_local_equal_length.cpp In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 9%] Linking CXX executable ../../bin/test_align_simd_global_equal_length_avx512_skx cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length_avx512_skx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target test_align_simd_global_equal_length_avx512_skx make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_equal_length_avx512_knl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 9%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/test_align_simd_global_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512er -mavx512pf -o CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/test_align_simd_global_equal_length.cpp.o -c /<>/tests/align/test_align_simd_global_equal_length.cpp In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 9%] Linking CXX executable ../../bin/test_align_simd_local_equal_length_sse4 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length_sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length_sse4.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length_sse4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target test_align_simd_local_equal_length_sse4 make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_equal_length_sse4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 9%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/test_align_simd_global_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -msse4 -o CMakeFiles/test_align_simd_global_equal_length_sse4.dir/test_align_simd_global_equal_length.cpp.o -c /<>/tests/align/test_align_simd_global_equal_length.cpp In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 9%] Linking CXX executable ../../bin/test_align_simd_global_equal_length_avx512_knl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length_avx512_knl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target test_align_simd_global_equal_length_avx512_knl make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_variable_length_sse4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 9%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/test_align_simd_local_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -msse4 -o CMakeFiles/test_align_simd_local_variable_length_sse4.dir/test_align_simd_local_variable_length.cpp.o -c /<>/tests/align/test_align_simd_local_variable_length.cpp In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 9%] Linking CXX executable ../../bin/test_align_simd_global_equal_length_sse4 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length_sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length_sse4.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length_sse4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target test_align_simd_global_equal_length_sse4 make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_variable_length_avx512_knl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 9%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/test_align_simd_global_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512er -mavx512pf -o CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/test_align_simd_global_variable_length.cpp.o -c /<>/tests/align/test_align_simd_global_variable_length.cpp In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 10%] Linking CXX executable ../../bin/test_align_simd_local_variable_length_sse4 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length_sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length_sse4.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length_sse4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target test_align_simd_local_variable_length_sse4 make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_variable_length_sse4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/test_align_simd_global_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -msse4 -o CMakeFiles/test_align_simd_global_variable_length_sse4.dir/test_align_simd_global_variable_length.cpp.o -c /<>/tests/align/test_align_simd_global_variable_length.cpp In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :34:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :50:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 10%] Linking CXX executable ../../bin/test_align_simd_global_variable_length_avx512_knl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length_avx512_knl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target test_align_simd_global_variable_length_avx512_knl make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_equal_length_avx512_cnl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/test_align_simd_local_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -mavx512ifma -mavx512vbmi -o CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/test_align_simd_local_equal_length.cpp.o -c /<>/tests/align/test_align_simd_local_equal_length.cpp In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 10%] Linking CXX executable ../../bin/test_align_simd_global_variable_length_sse4 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length_sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length_sse4.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length_sse4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target test_align_simd_global_variable_length_sse4 make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_equal_length make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -o CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -c /<>/tests/align/test_align_simd_local_equal_length.cpp In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 10%] Linking CXX executable ../../bin/test_align_simd_local_equal_length_avx512_cnl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length_avx512_cnl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target test_align_simd_local_equal_length_avx512_cnl make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_variable_length make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -o CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -c /<>/tests/align/test_align_simd_global_variable_length.cpp In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 11 warnings generated. [ 10%] Linking CXX executable ../../bin/test_align_simd_local_equal_length cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target test_align_simd_local_equal_length make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_variable_length_avx512_skx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/test_align_simd_global_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -o CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/test_align_simd_global_variable_length.cpp.o -c /<>/tests/align/test_align_simd_global_variable_length.cpp In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 11 warnings generated. [ 10%] Linking CXX executable ../../bin/test_align_simd_global_variable_length cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target test_align_simd_global_variable_length make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_variable_length_avx512_cnl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/test_align_simd_global_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -mavx512ifma -mavx512vbmi -o CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/test_align_simd_global_variable_length.cpp.o -c /<>/tests/align/test_align_simd_global_variable_length.cpp In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 11%] Linking CXX executable ../../bin/test_align_simd_global_variable_length_avx512_skx cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length_avx512_skx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 11%] Built target test_align_simd_global_variable_length_avx512_skx make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake --color= Scanning dependencies of target test_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 11%] Building CXX object tests/align/CMakeFiles/test_align.dir/test_align.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align.dir/test_align.cpp.o -c /<>/tests/align/test_align.cpp In file included from /<>/tests/align/test_align.cpp:38: In file included from /<>/tests/align/test_align_stream.h:40: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_interface.h:415:8: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' first required here it = end(container); ^ /<>/include/seqan/basic/iterator_interface.h:430:5: note: in instantiation of function template specialization 'seqan::goEnd, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >, seqan::Gaps, seqan::Alloc >, seqan::Tag > >' requested here goEnd(it, container(it)); ^ /<>/tests/align/test_align_gaps_iterator.h:274:9: note: in instantiation of function template specialization 'seqan::goEnd, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > > >' requested here goEnd(it); ^ /<>/tests/align/test_align_gaps_iterator.h:1062:5: note: in instantiation of function template specialization 'testAlignGapsIteratorMovement >' requested here testAlignGapsIteratorMovement(TTag()); ^ /<>/tests/align/test_align.cpp:142:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_align_gaps_iterator_array_movement' requested here SEQAN_CALL_TEST(test_align_gaps_iterator_array_movement); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_align_gaps_iterator_array_movement ^ In file included from /<>/tests/align/test_align.cpp:36: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::PrefixSegment> *, const seqan::Segment, seqan::Alloc >, seqan::PrefixSegment> &>' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/holder_tristate.h:548:5: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::PrefixSegment> *, const seqan::Segment, seqan::Alloc >, seqan::PrefixSegment> &>' requested here valueConstruct(ret, data); ^ /<>/include/seqan/basic/holder_tristate.h:650:21: note: in instantiation of function template specialization 'seqan::_holderAllocateObject, seqan::Alloc >, seqan::PrefixSegment>, seqan::Tag >, seqan::Segment, seqan::Alloc >, seqan::PrefixSegment> >' requested here me.data_value = _holderAllocateObject(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::PrefixSegment>, seqan::Segment, seqan::Alloc >, seqan::PrefixSegment> >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::PrefixSegment> >' requested here create(me); ^ /<>/include/seqan/align/gaps_array.h:269:29: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::PrefixSegment> >' requested here _setLength(gaps, length(value(gaps._source))); ^ /<>/include/seqan/align/gaps_array.h:155:9: note: in instantiation of function template specialization 'seqan::_reinitArrayGaps, seqan::Alloc >, seqan::PrefixSegment> >' requested here _reinitArrayGaps(*this); ^ /<>/tests/align/test_alignment_algorithms_global.h:2648:61: note: in instantiation of member function 'seqan::Gaps, seqan::Alloc >, seqan::PrefixSegment>, seqan::Tag >::Gaps' requested here Gaps, ArrayGaps> gapsH(prefixSegment); ^ /<>/tests/align/test_align.cpp:480:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_alignment_algorithms_global_different_container' requested here SEQAN_CALL_TEST(test_alignment_algorithms_global_different_container); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :5:1: note: expanded from here SEQAN_TEST_test_alignment_algorithms_global_different_container ^ In file included from /<>/tests/align/test_align.cpp:38: In file included from /<>/tests/align/test_align_stream.h:40: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/tests/align/test_alignment_algorithms_dynamic_gap.h:109:13: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' first required here itH = begin(row(align, 0), Standard()); ^ /<>/tests/align/test_alignment_algorithms_dynamic_gap.h:194:22: note: in instantiation of function template specialization '_validateAlignment, seqan::Alloc >, seqan::Tag >, false, false, false, false, seqan::Tag, int>' requested here SEQAN_ASSERT(_validateAlignment(alignObj, alignConfig, score, scoreScheme)); ^ /<>/tests/align/test_alignment_algorithms_dynamic_gap.h:224:9: note: in instantiation of function template specialization 'testDynamicGapInterfaces, seqan::Alloc >, seqan::Tag >, seqan::Tag, seqan::AlignConfig > >' requested here testDynamicGapInterfaces(alignObj, algo, alignConfig, lDiag, uDiag); ^ /<>/tests/align/test_alignment_algorithms_dynamic_gap.h:271:5: note: in instantiation of function template specialization 'testDynamicGapInterfaces, seqan::AlignConfig > >' requested here testDynamicGapInterfaces(seqan::NeedlemanWunsch(), seqan::AlignConfig<>()); ^ /<>/tests/align/test_align.cpp:494:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_alignment_algorithms_global_dynamic_cost' requested here SEQAN_CALL_TEST(test_alignment_algorithms_global_dynamic_cost); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :23:1: note: expanded from here SEQAN_TEST_test_alignment_algorithms_global_dynamic_cost ^ In file included from /<>/tests/align/test_align.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/tests/align/test_alignment_algorithms_local.h:395:22: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag >' requested here SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); ^ /<>/tests/align/test_align.cpp:500:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_align_local_alignment_enumeration_align' requested here SEQAN_CALL_TEST(test_align_local_alignment_enumeration_align); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :27:1: note: expanded from here SEQAN_TEST_test_align_local_alignment_enumeration_align ^ In file included from /<>/tests/align/test_align.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/tests/align/test_alignment_algorithms_local.h:395:22: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag >' requested here SEQAN_ASSERT(nextLocalAlignment(align, enumerator)); ^ /<>/tests/align/test_align.cpp:500:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_align_local_alignment_enumeration_align' requested here SEQAN_CALL_TEST(test_align_local_alignment_enumeration_align); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :27:1: note: expanded from here SEQAN_TEST_test_align_local_alignment_enumeration_align ^ 13 warnings generated. [ 11%] Linking CXX executable ../../bin/test_align_simd_global_variable_length_avx512_cnl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length_avx512_cnl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 11%] Built target test_align_simd_global_variable_length_avx512_cnl make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_equal_length_avx2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 11%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/test_align_simd_local_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx2 -o CMakeFiles/test_align_simd_local_equal_length_avx2.dir/test_align_simd_local_equal_length.cpp.o -c /<>/tests/align/test_align_simd_local_equal_length.cpp In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 5 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align.dir/test_align.cpp.o -o ../../bin/test_align -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_equal_length make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -o CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -c /<>/tests/align/test_align_simd_global_equal_length.cpp In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_equal_length_avx2 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length_avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length_avx2.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length_avx2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_equal_length_avx2 make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_equal_length_avx512_knl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/test_align_simd_local_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512er -mavx512pf -o CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/test_align_simd_local_equal_length.cpp.o -c /<>/tests/align/test_align_simd_local_equal_length.cpp In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 11 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_global_equal_length cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_global_equal_length make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_equal_length_avx512_skx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/test_align_simd_local_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -o CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/test_align_simd_local_equal_length.cpp.o -c /<>/tests/align/test_align_simd_local_equal_length.cpp In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_equal_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_equal_length_avx512_knl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length_avx512_knl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_equal_length_avx512_knl make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_variable_length_avx2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/test_align_simd_local_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx2 -o CMakeFiles/test_align_simd_local_variable_length_avx2.dir/test_align_simd_local_variable_length.cpp.o -c /<>/tests/align/test_align_simd_local_variable_length.cpp In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_equal_length_avx512_skx cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length_avx512_skx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_equal_length_avx512_skx make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_variable_length_avx512_cnl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/test_align_simd_local_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -mavx512ifma -mavx512vbmi -o CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/test_align_simd_local_variable_length.cpp.o -c /<>/tests/align/test_align_simd_local_variable_length.cpp In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_variable_length_avx2 cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length_avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length_avx2.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length_avx2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_variable_length_avx2 make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_global_equal_length_avx512_cnl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/test_align_simd_global_equal_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -mavx512ifma -mavx512vbmi -o CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/test_align_simd_global_equal_length.cpp.o -c /<>/tests/align/test_align_simd_global_equal_length.cpp In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:39: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::GlobalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::GlobalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_global_equal_length.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_global.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::GlobalAlignScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::GlobalAlignScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_global.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, seqan::TagList >, seqan::Tag, seqan::Tag >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_variable_length_avx512_cnl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length_avx512_cnl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_variable_length_avx512_cnl make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_variable_length_avx512_knl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/test_align_simd_local_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512er -mavx512pf -o CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/test_align_simd_local_variable_length.cpp.o -c /<>/tests/align/test_align_simd_local_variable_length.cpp In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_variable_length_avx512_knl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length_avx512_knl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_variable_length_avx512_knl make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_variable_length_avx512_skx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/test_align_simd_local_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -o CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/test_align_simd_local_variable_length.cpp.o -c /<>/tests/align/test_align_simd_local_variable_length.cpp In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Dependent > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:493:9: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :112:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :128:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_variable_length_avx512_skx cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length_avx512_skx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_variable_length_avx512_skx make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_simd_local_variable_length make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -o CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -c /<>/tests/align/test_align_simd_local_variable_length.cpp In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:50:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:38: In file included from /<>/tests/align/test_align_simd_base.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *, seqan::Align, seqan::Alloc >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer, seqan::Alloc >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/tests/align/test_align_simd_base.h:167:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Tag >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here auto zipCont = makeZipView(alignments, std::get<0>(sets), std::get<1>(sets)); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &, seqan::StringSet, seqan::Alloc >, seqan::Tag >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:166:20: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, gapSeqSetH, gapSeqSetV); ^ /<>/tests/align/test_align_simd_base.h:216:9: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimd(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:52:5: note: in instantiation of function template specialization 'testAlignSimd, impl::test_align_simd::LocalAlignTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimd(impl::test_align_simd::LocalAlignTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :61:1: note: expanded from here SimdAlignTestCommon__Linear_Align ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Align >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Align' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:44:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Align) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:62:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::Tag, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Score(2, -1, -1), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align/test_align_simd_local_variable_length.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/tests/align/test_align_simd_base.h:265:9: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag >' requested here testAlignSimdScore(TFunctor(), score, config, TSimdLength()); ^ /<>/tests/align/test_align_simd_local.h:64:5: note: in instantiation of function template specialization 'testAlignSimdScore, impl::test_align_simd::LocalScoreTester_, int, seqan::ScoreMatrix, seqan::Blosum62_>, seqan::AlignConfig >, seqan::Tag, seqan::Tag >' requested here testAlignSimdScore(impl::test_align_simd::LocalScoreTester_(), seqan::Blosum62(-2), ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::runTest' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :77:1: note: expanded from here SimdAlignTestCommon__Linear_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'SimdAlignTestCommon__Linear_Score >, seqan::Tag, seqan::Tag > >::SimdAlignTestCommon__Linear_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align/test_align_simd_local.h:56:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Tag, seqan::Tag >, void> >::make' requested here SEQAN_TYPED_TEST(SimdAlignTestCommon, Linear_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 13 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_global_equal_length_avx512_cnl cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length_avx512_cnl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_global_equal_length_avx512_cnl make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_extend /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_extend /<>/obj-x86_64-linux-gnu/tests/align_extend/CMakeFiles/test_align_extend.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_extend make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_extend/CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_extend && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o -c /<>/tests/align_extend/test_align_extend.cpp 11 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_simd_local_variable_length cd /<>/obj-x86_64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_variable_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_data_structures make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -c /<>/tests/align_parallel/test_align_parallel_data_structures.cpp In file included from /<>/tests/align_extend/test_align_extend.cpp:40: In file included from /<>/tests/align_extend/test_align_extend.h:43: In file included from /<>/include/seqan/align_extend.h:41: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align >, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/tests/align_extend/test_align_extend.h:558:16: note: in implicit copy constructor for 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' first required here TAlign align(alignOrig); ^ /<>/tests/align_extend/test_align_extend.cpp:49:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_align_extend_semiglobal' requested here SEQAN_CALL_TEST(test_align_extend_semiglobal); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :61:1: note: expanded from here SEQAN_TEST_test_align_extend_semiglobal ^ [ 12%] Linking CXX executable ../../bin/test_align_parallel_data_structures cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_data_structures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -o ../../bin/test_align_parallel_data_structures -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_data_structures make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_algorithm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -c /<>/tests/align_parallel/test_align_parallel_algorithm.cpp [ 12%] Linking CXX executable ../../bin/test_align_parallel_algorithm cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_algorithm make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_interface make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -c /<>/tests/align_parallel/test_align_parallel_interface.cpp In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:310:19: note: in instantiation of function template specialization 'std::_Tuple_impl<1, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here _M_tail(*this)._M_assign( ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, int *, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > >, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > >, seqan::ZipContainer >::ContainerView > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &, const seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/align_interface_wrapper.h:83:20: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) auto zipCont = makeZipView(results, stringsH, stringsV); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :17:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 1 warning generated. [ 12%] Linking CXX executable ../../bin/test_align_extend cd /<>/obj-x86_64-linux-gnu/tests/align_extend && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_extend.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o -o ../../bin/test_align_extend -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_extend make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_interface_sse4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/test_align_parallel_interface.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -msse4 -o CMakeFiles/test_align_parallel_interface_sse4.dir/test_align_parallel_interface.cpp.o -c /<>/tests/align_parallel/test_align_parallel_interface.cpp In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :145:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :145:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 4 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_parallel_interface cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_interface make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_algorithm_avx512_skx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/test_align_parallel_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -o CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/test_align_parallel_algorithm.cpp.o -c /<>/tests/align_parallel/test_align_parallel_algorithm.cpp [ 12%] Linking CXX executable ../../bin/test_align_parallel_algorithm_avx512_skx cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm_avx512_skx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_algorithm_avx512_skx make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_interface_avx2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/test_align_parallel_interface.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx2 -o CMakeFiles/test_align_parallel_interface_avx2.dir/test_align_parallel_interface.cpp.o -c /<>/tests/align_parallel/test_align_parallel_interface.cpp In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 5 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_parallel_interface_sse4 cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface_sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface_sse4.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface_sse4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_interface_sse4 make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_interface_avx512_knl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/test_align_parallel_interface.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx512f -mavx512cd -mavx512er -mavx512pf -o CMakeFiles/test_align_parallel_interface_avx512_knl.dir/test_align_parallel_interface.cpp.o -c /<>/tests/align_parallel/test_align_parallel_interface.cpp In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 5 warnings generated. [ 12%] Linking CXX executable ../../bin/test_align_parallel_interface_avx2 cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface_avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface_avx2.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface_avx2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_interface_avx2 make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_algorithm_sse4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/test_align_parallel_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -msse4 -o CMakeFiles/test_align_parallel_algorithm_sse4.dir/test_align_parallel_algorithm.cpp.o -c /<>/tests/align_parallel/test_align_parallel_algorithm.cpp [ 13%] Linking CXX executable ../../bin/test_align_parallel_algorithm_sse4 cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm_sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm_sse4.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm_sse4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 13%] Built target test_align_parallel_algorithm_sse4 make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_interface_avx512_cnl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/test_align_parallel_interface.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -mavx512ifma -mavx512vbmi -o CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/test_align_parallel_interface.cpp.o -c /<>/tests/align_parallel/test_align_parallel_interface.cpp In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 5 warnings generated. [ 13%] Linking CXX executable ../../bin/test_align_parallel_interface_avx512_knl cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface_avx512_knl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface_avx512_knl.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface_avx512_knl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 13%] Built target test_align_parallel_interface_avx512_knl make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_algorithm_avx2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/test_align_parallel_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx2 -o CMakeFiles/test_align_parallel_algorithm_avx2.dir/test_align_parallel_algorithm.cpp.o -c /<>/tests/align_parallel/test_align_parallel_algorithm.cpp [ 13%] Linking CXX executable ../../bin/test_align_parallel_algorithm_avx2 cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm_avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm_avx2.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm_avx2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 13%] Built target test_align_parallel_algorithm_avx2 make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_interface_avx512_skx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/test_align_parallel_interface.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -o CMakeFiles/test_align_parallel_interface_avx512_skx.dir/test_align_parallel_interface.cpp.o -c /<>/tests/align_parallel/test_align_parallel_interface.cpp In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:93:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:94:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter<(lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)> >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/tests/align_parallel/../align/test_mock.h:187:14: note: in instantiation of function template specialization 'std::sort, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, (lambda at /<>/tests/align_parallel/../align/test_mock.h:188:19)>' requested here std::sort(seqan::begin(set2, seqan::Standard()), seqan::end(set2, seqan::Standard()), ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Dependent > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Dependent > >, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Dependent > > &, const seqan::StringSet, seqan::Alloc >, seqan::Dependent > > &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:332:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, depSetH, depSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/align_parallel/test_align_parallel_interface.cpp:35: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:1220:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::_M_assign, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > > >::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment>, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> >, seqan::ZipContainer >::ContainerView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/include/seqan/align/dp_align_simd_helper.h:241:20: note: in instantiation of function template specialization 'seqan::makeZipView, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &, const seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::InfixSegment> &>' requested here auto zipView = makeZipView(seqH, seqV); ^ /<>/include/seqan/align/dp_align_simd_helper.h:339:13: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _prepareAndRunSimdAlignment(resultsBatch, trace, infSetH, infSetV, simdScoringScheme, config, TGapModel()); ^ /<>/include/seqan/align/global_alignment_unbanded.h:734:12: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag, false, false, false, false, seqan::Tag >' requested here return globalAlignmentScore(stringH, stringsV, scoringScheme, alignConfig); ^ /<>/include/seqan/align_parallel/parallel_align_interface.h:289:16: note: in instantiation of function template specialization 'seqan::globalAlignmentScore, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Owner >, int, seqan::Tag >' requested here return globalAlignmentScore(std::forward(args)...); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::runTest' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :71:1: note: expanded from here ParallelAlignInterfaceTestCommon__Global_Score ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'ParallelAlignInterfaceTestCommon__Global_Score, seqan::Tag > > >::ParallelAlignInterfaceTestCommon__Global_Score' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/align_parallel/test_align_parallel_interface.h:113:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList, seqan::Tag > >, seqan::TagList >, seqan::Tag > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(ParallelAlignInterfaceTestCommon, Global_Score) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 5 warnings generated. [ 13%] Linking CXX executable ../../bin/test_align_parallel_interface_avx512_cnl cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface_avx512_cnl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 13%] Built target test_align_parallel_interface_avx512_cnl make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_algorithm_avx512_cnl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/test_align_parallel_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -mavx512ifma -mavx512vbmi -o CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/test_align_parallel_algorithm.cpp.o -c /<>/tests/align_parallel/test_align_parallel_algorithm.cpp [ 13%] Linking CXX executable ../../bin/test_align_parallel_algorithm_avx512_cnl cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm_avx512_cnl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 13%] Built target test_align_parallel_algorithm_avx512_cnl make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_parallel_algorithm_avx512_knl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/test_align_parallel_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -mavx512f -mavx512cd -mavx512er -mavx512pf -o CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/test_align_parallel_algorithm.cpp.o -c /<>/tests/align_parallel/test_align_parallel_algorithm.cpp [ 13%] Linking CXX executable ../../bin/test_align_parallel_algorithm_avx512_knl cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm_avx512_knl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 13%] Built target test_align_parallel_algorithm_avx512_knl make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_profile /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_profile /<>/obj-x86_64-linux-gnu/tests/align_profile/CMakeFiles/test_align_profile.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_profile make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_profile/CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_profile && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o -c /<>/tests/align_profile/test_align_profile.cpp In file included from /<>/tests/align_profile/test_align_profile.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/align_profile/test_align_profile.cpp:38: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/align_profile/test_align_profile.cpp:38: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/align_profile/test_align_profile.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/align_profile/test_align_profile.cpp:38: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter, int, void>, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/align_profile/add_to_profile.h:130:9: note: in implicit copy assignment operator for 'seqan::Iter, int, void>, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' first required here itH = begin(gapsH, Standard()); ^ /<>/tests/align_profile/test_align_profile.cpp:145:5: note: in instantiation of function template specialization 'seqan::addToProfile, int, void, seqan::Alloc >' requested here addToProfile(profile, seq); ^ /<>/tests/align_profile/test_align_profile.cpp:353:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_align_profile_add_to_profile' requested here SEQAN_CALL_TEST(test_align_profile_add_to_profile); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :28:1: note: expanded from here SEQAN_TEST_test_align_profile_add_to_profile ^ 5 warnings generated. [ 13%] Linking CXX executable ../../bin/test_align_profile cd /<>/obj-x86_64-linux-gnu/tests/align_profile && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_profile.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o -o ../../bin/test_align_profile -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 13%] Built target test_align_profile make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_split /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_split /<>/obj-x86_64-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/DependInfo.cmake --color= Scanning dependencies of target test_align_split make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building CXX object tests/align_split/CMakeFiles/test_align_split.dir/test_align_split.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/align_split && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_split.dir/test_align_split.cpp.o -c /<>/tests/align_split/test_align_split.cpp 5 warnings generated. [ 14%] Linking CXX executable ../../bin/test_align_parallel_interface_avx512_skx cd /<>/obj-x86_64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface_avx512_skx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ftemplate-depth=1024 -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface_avx512_skx.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface_avx512_skx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_align_parallel_interface_avx512_skx make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/alignment_free /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/alignment_free /<>/obj-x86_64-linux-gnu/tests/alignment_free/CMakeFiles/test_alignment_free.dir/DependInfo.cmake --color= Scanning dependencies of target test_alignment_free make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/alignment_free/CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/alignment_free && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o -c /<>/tests/alignment_free/test_alignment_free.cpp In file included from /<>/tests/alignment_free/test_alignment_free.cpp:37: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/alignment_free/af_n2.h:189:34: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here itStandardisedKmerCounts = begin(standardisedKmerCounts); ^ /<>/include/seqan/alignment_free/alignment_free_comparison.h:101:5: note: in instantiation of function template specialization 'seqan::_alignmentFreeComparison, seqan::Alloc >, seqan::Owner > > >' requested here _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); ^ /<>/tests/alignment_free/test_alignment_free.cpp:304:5: note: in instantiation of function template specialization 'seqan::alignmentFreeComparison, seqan::Alloc >, seqan::Owner > >, double, seqan::AFScore >' requested here alignmentFreeComparison(myMatrix, sequences, myScoreN2); ^ /<>/tests/alignment_free/test_alignment_free.cpp:509:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_alignment_free_n2_dna5' requested here SEQAN_CALL_TEST(test_alignment_free_n2_dna5); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :28:1: note: expanded from here SEQAN_TEST_test_alignment_free_n2_dna5 ^ In file included from /<>/tests/alignment_free/test_alignment_free.cpp:37: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/alignment_free/af_n2.h:189:34: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here itStandardisedKmerCounts = begin(standardisedKmerCounts); ^ /<>/include/seqan/alignment_free/alignment_free_comparison.h:101:5: note: in instantiation of function template specialization 'seqan::_alignmentFreeComparison, seqan::Alloc >, seqan::Owner > > >' requested here _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); ^ /<>/tests/alignment_free/test_alignment_free.cpp:304:5: note: in instantiation of function template specialization 'seqan::alignmentFreeComparison, seqan::Alloc >, seqan::Owner > >, double, seqan::AFScore >' requested here alignmentFreeComparison(myMatrix, sequences, myScoreN2); ^ /<>/tests/alignment_free/test_alignment_free.cpp:509:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_alignment_free_n2_dna5' requested here SEQAN_CALL_TEST(test_alignment_free_n2_dna5); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :28:1: note: expanded from here SEQAN_TEST_test_alignment_free_n2_dna5 ^ In file included from /<>/tests/alignment_free/test_alignment_free.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/alignment_free/kmer_functions.h:723:39: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, unsigned long>' requested here String my_prefix = prefix(word2, my_min); ^ /<>/include/seqan/alignment_free/kmer_functions.h:593:5: note: in instantiation of function template specialization 'seqan::calculatePeriodicity, seqan::Alloc > >' requested here calculatePeriodicity(periodicity1, word1, word2); ^ /<>/include/seqan/alignment_free/af_n2.h:395:29: note: in instantiation of function template specialization 'seqan::calculateCovariance, seqan::Alloc >, seqan::String > >' requested here calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundFrequencies, (len1 + score.kmerSize - 1)); ^ /<>/include/seqan/alignment_free/af_n2.h:179:9: note: in instantiation of function template specialization 'seqan::_standardiseCounts >, seqan::String, seqan::Alloc > >' requested here _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score); ^ /<>/include/seqan/alignment_free/alignment_free_comparison.h:101:5: note: in instantiation of function template specialization 'seqan::_alignmentFreeComparison, seqan::Alloc >, seqan::Owner > > >' requested here _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); ^ /<>/tests/alignment_free/test_alignment_free.cpp:304:5: note: in instantiation of function template specialization 'seqan::alignmentFreeComparison, seqan::Alloc >, seqan::Owner > >, double, seqan::AFScore >' requested here alignmentFreeComparison(myMatrix, sequences, myScoreN2); ^ /<>/tests/alignment_free/test_alignment_free.cpp:509:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_alignment_free_n2_dna5' requested here SEQAN_CALL_TEST(test_alignment_free_n2_dna5); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :28:1: note: expanded from here SEQAN_TEST_test_alignment_free_n2_dna5 ^ [ 14%] Linking CXX executable ../../bin/test_align_split cd /<>/obj-x86_64-linux-gnu/tests/align_split && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_split.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_split.dir/test_align_split.cpp.o -o ../../bin/test_align_split -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_align_split make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/arg_parse /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/arg_parse /<>/obj-x86_64-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/DependInfo.cmake --color= Scanning dependencies of target test_arg_parse_version_check make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/arg_parse && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o -c /<>/tests/arg_parse/test_arg_parse_version_check.cpp 3 warnings generated. [ 14%] Linking CXX executable ../../bin/test_alignment_free cd /<>/obj-x86_64-linux-gnu/tests/alignment_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_alignment_free.dir/test_alignment_free.cpp.o -o ../../bin/test_alignment_free -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_alignment_free make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/arg_parse /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/arg_parse /<>/obj-x86_64-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse.dir/DependInfo.cmake --color= Scanning dependencies of target test_arg_parse make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/arg_parse/CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/arg_parse && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -c /<>/tests/arg_parse/test_arg_parse.cpp [ 14%] Linking CXX executable ../../bin/test_arg_parse_version_check cd /<>/obj-x86_64-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse_version_check.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o -o ../../bin/test_arg_parse_version_check -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_arg_parse_version_check make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/bam_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/bam_io /<>/obj-x86_64-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_bam_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/bam_io/CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/bam_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -c /<>/tests/bam_io/test_bam_io.cpp In file included from /<>/tests/bam_io/test_bam_io.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/bam_io/test_bam_io.cpp:37: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/bam_io/test_bam_io.cpp:37: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/bam_io/test_bam_io.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 14%] Linking CXX executable ../../bin/test_arg_parse cd /<>/obj-x86_64-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -o ../../bin/test_arg_parse -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_arg_parse make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_exception make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -c /<>/tests/basic/test_basic_exception.cpp [ 14%] Linking CXX executable ../../bin/test_basic_exception cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_exception.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -o ../../bin/test_basic_exception -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_exception make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_metaprogramming make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -c /<>/tests/basic/test_basic_metaprogramming.cpp [ 14%] Linking CXX executable ../../bin/test_basic_metaprogramming cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_metaprogramming.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -o ../../bin/test_basic_metaprogramming -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_metaprogramming make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_math make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -c /<>/tests/basic/test_basic_math.cpp [ 14%] Linking CXX executable ../../bin/test_basic_math cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_math.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -o ../../bin/test_basic_math -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_math make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_fundamental make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -c /<>/tests/basic/test_basic_fundamental.cpp [ 14%] Linking CXX executable ../../bin/test_basic_fundamental cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_fundamental.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -o ../../bin/test_basic_fundamental -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_fundamental make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_concept.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_concept make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -c /<>/tests/basic/test_basic_concept.cpp [ 14%] Linking CXX executable ../../bin/test_basic_concept cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_concept.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -o ../../bin/test_basic_concept -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_concept make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_container make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -c /<>/tests/basic/test_basic_container.cpp [ 14%] Linking CXX executable ../../bin/test_basic_container cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -o ../../bin/test_basic_container -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_container make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_aggregate make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -c /<>/tests/basic/test_basic_aggregate.cpp In file included from /<>/tests/basic/test_basic_aggregate.cpp:38: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Triple >' first required here target = source; ^ /<>/tests/basic/test_basic_aggregate.h:946:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::Triple > >' requested here assign(t1, t2); ^ /<>/tests/basic/test_basic_aggregate.cpp:97:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_basic_aggregates_triple_base_assign' requested here SEQAN_CALL_TEST(test_basic_aggregates_triple_base_assign); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :58:1: note: expanded from here SEQAN_TEST_test_basic_aggregates_triple_base_assign ^ 1 warning generated. [ 14%] Linking CXX executable ../../bin/test_basic_aggregate cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_aggregate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -o ../../bin/test_basic_aggregate -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_aggregate make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_alphabet.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_alphabet make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 14%] Building CXX object tests/basic/CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -c /<>/tests/basic/test_basic_alphabet.cpp [ 14%] Linking CXX executable ../../bin/test_basic_alphabet cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_alphabet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -o ../../bin/test_basic_alphabet -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_alphabet make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_allocator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object tests/basic/CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -c /<>/tests/basic/test_basic_allocator.cpp 4 warnings generated. [ 15%] Linking CXX executable ../../bin/test_bam_io cd /<>/obj-x86_64-linux-gnu/tests/bam_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bam_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -o ../../bin/test_bam_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target test_bam_io make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_parallelism.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_parallelism make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object tests/basic/CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -c /<>/tests/basic/test_basic_parallelism.cpp [ 15%] Linking CXX executable ../../bin/test_basic_parallelism cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_parallelism.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -o ../../bin/test_basic_parallelism -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target test_basic_parallelism make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_smart_pointer make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object tests/basic/CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -c /<>/tests/basic/test_basic_smart_pointer.cpp [ 15%] Linking CXX executable ../../bin/test_basic_allocator cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_allocator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -o ../../bin/test_basic_allocator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target test_basic_allocator make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_proxy make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object tests/basic/CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -c /<>/tests/basic/test_basic_proxy.cpp [ 15%] Linking CXX executable ../../bin/test_basic_proxy cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_proxy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -o ../../bin/test_basic_proxy -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target test_basic_proxy make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_iterator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/build [ 15%] Linking CXX executable ../../bin/test_basic_smart_pointer cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_smart_pointer.dir/link.txt --verbose=1 make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object tests/basic/CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -o ../../bin/test_basic_smart_pointer -lrt -lz -lbz2 cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -c /<>/tests/basic/test_basic_iterator.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target test_basic_smart_pointer make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/bed_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/bed_io /<>/obj-x86_64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_bed_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 17%] Building CXX object tests/bed_io/CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/bed_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -c /<>/tests/bed_io/test_bed_io.cpp In file included from /<>/tests/basic/test_basic_iterator.cpp:38: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Iter > >' first required here target = source; ^ /<>/tests/basic/test_basic_iterator.h:1000:9: note: in instantiation of function template specialization 'seqan::assign > >, seqan::Iter > > >' requested here assign(it2, it); ^ /<>/tests/basic/test_basic_iterator.cpp:68:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_basic_iterator_position_transport' requested here SEQAN_CALL_TEST(test_basic_iterator_position_transport); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :44:1: note: expanded from here SEQAN_TEST_test_basic_iterator_position_transport ^ In file included from /<>/tests/basic/test_basic_iterator.cpp:38: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Iter > >' first required here target = source; ^ /<>/tests/basic/test_basic_iterator.h:1000:9: note: in instantiation of function template specialization 'seqan::assign > >, seqan::Iter > > >' requested here assign(it2, it); ^ /<>/tests/basic/test_basic_iterator.cpp:68:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_basic_iterator_position_transport' requested here SEQAN_CALL_TEST(test_basic_iterator_position_transport); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :44:1: note: expanded from here SEQAN_TEST_test_basic_iterator_position_transport ^ In file included from /<>/tests/bed_io/test_bed_io.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/bed_io/test_bed_io.cpp:390:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::BedFileIn bedStream(toCString(inPath)); ^ /<>/tests/bed_io/test_bed_io.cpp:492:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_bed_bed_file_read' requested here SEQAN_CALL_TEST(test_bed_bed_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :7:1: note: expanded from here SEQAN_TEST_test_bed_bed_file_read ^ In file included from /<>/tests/bed_io/test_bed_io.cpp:39: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/bed_io/test_bed_io.cpp:390:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::BedFileIn bedStream(toCString(inPath)); ^ /<>/tests/bed_io/test_bed_io.cpp:492:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_bed_bed_file_read' requested here SEQAN_CALL_TEST(test_bed_bed_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :7:1: note: expanded from here SEQAN_TEST_test_bed_bed_file_read ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/bed_io/test_bed_io.cpp:39: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/bed_io/test_bed_io.cpp:390:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::BedFileIn bedStream(toCString(inPath)); ^ /<>/tests/bed_io/test_bed_io.cpp:492:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_bed_bed_file_read' requested here SEQAN_CALL_TEST(test_bed_bed_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :7:1: note: expanded from here SEQAN_TEST_test_bed_bed_file_read ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/bed_io/test_bed_io.cpp:39: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bed_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/bed_io/test_bed_io.cpp:390:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::BedFileIn bedStream(toCString(inPath)); ^ /<>/tests/bed_io/test_bed_io.cpp:492:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_bed_bed_file_read' requested here SEQAN_CALL_TEST(test_bed_bed_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :7:1: note: expanded from here SEQAN_TEST_test_bed_bed_file_read ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/bed_io/test_bed_io.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/bed_io/test_bed_io.cpp:390:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::BedFileIn bedStream(toCString(inPath)); ^ /<>/tests/bed_io/test_bed_io.cpp:492:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_bed_bed_file_read' requested here SEQAN_CALL_TEST(test_bed_bed_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :7:1: note: expanded from here SEQAN_TEST_test_bed_bed_file_read ^ 2 warnings generated. [ 18%] Linking CXX executable ../../bin/test_basic_iterator cd /<>/obj-x86_64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -o ../../bin/test_basic_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_basic_iterator make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/blast /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/blast /<>/obj-x86_64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake --color= Scanning dependencies of target test_blast make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/blast/CMakeFiles/test_blast.dir/test_blast.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/blast && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_blast.dir/test_blast.cpp.o -c /<>/tests/blast/test_blast.cpp In file included from /<>/tests/blast/test_blast.cpp:41: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/blast/blast_tabular_out.h:289:22: note: in instantiation of function template specialization 'seqan::prefix >, long>' requested here write(s, prefix(match.sId, ^ /<>/include/seqan/blast/blast_tabular_out.h:537:17: note: in instantiation of function template specialization 'seqan::_writeField, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::Segment >, seqan::InfixSegment>, seqan::String >, unsigned int, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String >, std::vector, std::allocator > >, seqan::String > >, seqan::Segment >, seqan::InfixSegment>, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _writeField(stream, context, match, record, *it, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_out.h:654:9: note: in instantiation of function template specialization 'seqan::_writeMatch >, seqan::InfixSegment>, seqan::String >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, unsigned int, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String >, std::vector, std::allocator > >, seqan::String > >, seqan::Segment >, seqan::InfixSegment>, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _writeMatch(stream, context, *it, r, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_out.h:664:5: note: in instantiation of function template specialization 'seqan::writeRecord, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String >, std::vector, std::allocator > >, seqan::String > >, seqan::Segment >, seqan::InfixSegment>, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here writeRecord(formattedFile.iter, context(formattedFile), r, BlastTabular()); ^ /<>/tests/blast/test_blast_output.h:66:9: note: in instantiation of function template specialization 'seqan::writeRecord, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String >, std::vector, std::allocator > >, seqan::String > >, seqan::Segment >, seqan::InfixSegment>, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int>' requested here writeRecord(out, r); ^ /<>/tests/blast/test_blast_output.h:192:5: note: in instantiation of function template specialization '_testBlastOutputWriteFile, seqan::Score, seqan::Blosum62_> >, seqan::String, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::String >, std::vector, std::allocator > >, seqan::String > >, seqan::Segment >, seqan::InfixSegment>, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int>, seqan::Alloc >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _testBlastOutputWriteFile(file, context, records, TFormat()); ^ /<>/tests/blast/test_blast_output.h:497:5: note: in instantiation of function template specialization '_testBlastOutputGenerateContent, seqan::Score, seqan::Blosum62_> >, seqan::Tag, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _testBlastOutputGenerateContent(fstream, context, TFormat()); ^ /<>/tests/blast/test_blast_output.h:524:5: note: in instantiation of function template specialization '_testBlastOutput, seqan::Blosum62_> >, seqan::Tag, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _testBlastOutput(context, BlastTabular()); ^ /<>/tests/blast/test_blast.cpp:65:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_blast_write_tabular_without_comments' requested here SEQAN_CALL_TEST(test_blast_write_tabular_without_comments); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :5:1: note: expanded from here SEQAN_TEST_test_blast_write_tabular_without_comments ^ In file included from /<>/tests/blast/test_blast.cpp:41: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/blast/test_blast_input.h:166:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn fileIn(toCString(inPath)); ^ /<>/tests/blast/test_blast_input.h:327:5: note: in instantiation of function template specialization '_testReadTabularWithoutComments, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); ^ /<>/tests/blast/test_blast.cpp:85:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_blast_read_tabular_without_comments' requested here SEQAN_CALL_TEST(test_blast_read_tabular_without_comments); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :37:1: note: expanded from here SEQAN_TEST_test_blast_read_tabular_without_comments ^ In file included from /<>/tests/blast/test_blast.cpp:43: In file included from /<>/include/seqan/blast.h:56: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/blast/test_blast_input.h:166:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn fileIn(toCString(inPath)); ^ /<>/tests/blast/test_blast_input.h:327:5: note: in instantiation of function template specialization '_testReadTabularWithoutComments, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); ^ /<>/tests/blast/test_blast.cpp:85:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_blast_read_tabular_without_comments' requested here SEQAN_CALL_TEST(test_blast_read_tabular_without_comments); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :37:1: note: expanded from here SEQAN_TEST_test_blast_read_tabular_without_comments ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/blast/test_blast.cpp:43: In file included from /<>/include/seqan/blast.h:56: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/blast/test_blast_input.h:166:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn fileIn(toCString(inPath)); ^ /<>/tests/blast/test_blast_input.h:327:5: note: in instantiation of function template specialization '_testReadTabularWithoutComments, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); ^ /<>/tests/blast/test_blast.cpp:85:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_blast_read_tabular_without_comments' requested here SEQAN_CALL_TEST(test_blast_read_tabular_without_comments); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :37:1: note: expanded from here SEQAN_TEST_test_blast_read_tabular_without_comments ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/blast/test_blast.cpp:41: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/blast/test_blast_input.h:166:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn fileIn(toCString(inPath)); ^ /<>/tests/blast/test_blast_input.h:327:5: note: in instantiation of function template specialization '_testReadTabularWithoutComments, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); ^ /<>/tests/blast/test_blast.cpp:85:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_blast_read_tabular_without_comments' requested here SEQAN_CALL_TEST(test_blast_read_tabular_without_comments); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :37:1: note: expanded from here SEQAN_TEST_test_blast_read_tabular_without_comments ^ In file included from /<>/tests/blast/test_blast.cpp:41: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/blast/blast_tabular_in.h:185:14: note: in instantiation of function template specialization 'seqan::startsWith, char [2]>' requested here return (!startsWith(context._lineBuffer, "#") && !empty(context._lineBuffer)); ^ /<>/include/seqan/blast/blast_tabular_in.h:930:13: note: in instantiation of function template specialization 'seqan::_onMatch, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here if (_onMatch(context, BlastTabular())) ^ /<>/include/seqan/blast/blast_tabular_in.h:941:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here readHeader(context(formattedFile), formattedFile.iter, BlastTabular()); ^ /<>/tests/blast/test_blast_input.h:195:5: note: in instantiation of function template specialization 'seqan::readHeader, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here readHeader(fileIn); ^ /<>/tests/blast/test_blast_input.h:327:5: note: in instantiation of function template specialization '_testReadTabularWithoutComments, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); ^ /<>/tests/blast/test_blast.cpp:85:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_blast_read_tabular_without_comments' requested here SEQAN_CALL_TEST(test_blast_read_tabular_without_comments); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :37:1: note: expanded from here SEQAN_TEST_test_blast_read_tabular_without_comments ^ In file included from /<>/tests/blast/test_blast.cpp:41: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/blast/blast_tabular_in.h:286:60: note: in instantiation of function template specialization 'seqan::prefix, long>' requested here context.blastProgram = _programStringToTag(prefix(context.versionString, ^ /<>/include/seqan/blast/blast_tabular_in.h:460:5: note: in instantiation of function template specialization 'seqan::_readCommentLinesImpl >, seqan::Tag >, seqan::Gaps >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _readCommentLinesImpl(r, iter, context, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_in.h:716:5: note: in instantiation of function template specialization 'seqan::_readCommentLines >, seqan::Tag >, seqan::Gaps >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _readCommentLines(blastRecord, iter, context, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_in.h:889:9: note: in instantiation of function template specialization 'seqan::_readRecordWithCommentLines, std::char_traits >, seqan::StreamIterator > >, seqan::BlastMatch >, seqan::Tag >, seqan::Gaps >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _readRecordWithCommentLines(blastRecord, iter, context, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_in.h:898:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::Tag >, seqan::Gaps >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here readRecord(blastRecord, formattedFile.iter, context(formattedFile), BlastTabular()); ^ /<>/tests/blast/test_blast_input.h:206:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::Tag >, seqan::Gaps >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here readRecord(r, fileIn); ^ /<>/tests/blast/test_blast_input.h:327:5: note: in instantiation of function template specialization '_testReadTabularWithoutComments, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here _testReadTabularWithoutComments(context, NOCOMMENTS_DEFAULTS, true, false); ^ /<>/tests/blast/test_blast.cpp:85:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_blast_read_tabular_without_comments' requested here SEQAN_CALL_TEST(test_blast_read_tabular_without_comments); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :37:1: note: expanded from here SEQAN_TEST_test_blast_read_tabular_without_comments ^ 5 warnings generated. [ 18%] Linking CXX executable ../../bin/test_bed_io cd /<>/obj-x86_64-linux-gnu/tests/bed_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bed_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -o ../../bin/test_bed_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_bed_io make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/consensus /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/consensus /<>/obj-x86_64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake --color= Scanning dependencies of target test_consensus make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/consensus/CMakeFiles/test_consensus.dir/test_consensus.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/consensus && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_consensus.dir/test_consensus.cpp.o -c /<>/tests/consensus/test_consensus.cpp In file included from /<>/tests/consensus/test_consensus.cpp:35: In file included from /<>/tests/consensus/test_consensus.h:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/consensus/test_consensus.cpp:35: In file included from /<>/tests/consensus/test_consensus.h:39: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/consensus/test_consensus.cpp:35: In file included from /<>/tests/consensus/test_consensus.h:39: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/consensus/test_consensus.cpp:35: In file included from /<>/tests/consensus/test_consensus.h:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/consensus/test_consensus.cpp:35: In file included from /<>/tests/consensus/test_consensus.h:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/tests/consensus/test_consensus_realign.h:63:5: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, 0, 1, 30, false); ^ /<>/tests/consensus/test_consensus.cpp:40:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_consensus_realign_one_contig_small' requested here SEQAN_CALL_TEST(test_consensus_realign_one_contig_small); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :23:1: note: expanded from here SEQAN_TEST_test_consensus_realign_one_contig_small ^ 7 warnings generated. [ 18%] Linking CXX executable ../../bin/test_blast cd /<>/obj-x86_64-linux-gnu/tests/blast && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_blast.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_blast.dir/test_blast.cpp.o -o ../../bin/test_blast -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_blast make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/consensus_v2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/consensus_v2 /<>/obj-x86_64-linux-gnu/tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/DependInfo.cmake --color= Scanning dependencies of target test_consensus_v2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/consensus_v2 && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o -c /<>/tests/consensus_v2/test_consensus_v2.cpp 5 warnings generated. [ 18%] Linking CXX executable ../../bin/test_consensus cd /<>/obj-x86_64-linux-gnu/tests/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_consensus.dir/test_consensus.cpp.o -o ../../bin/test_consensus -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_consensus make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/find /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/find /<>/obj-x86_64-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake --color= Scanning dependencies of target test_find make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/find/CMakeFiles/test_find.dir/test_find.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/find && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find.dir/test_find.cpp.o -c /<>/tests/find/test_find.cpp In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:40: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:41: In file included from /<>/include/seqan/consensus.h:42: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:41: In file included from /<>/include/seqan/consensus.h:42: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:40: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/find/test_find.cpp:54: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/find/test_find.cpp:1589:40: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here Segment myPrefix(prefix(kNeedle, 1)); ^ In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:41: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/find_pigeonhole.h:518:35: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here indexShape(host(pattern)) = pattern.shape; ^ /<>/include/seqan/consensus/overlap_info_computation.h:370:5: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, double, void>' requested here _patternInit(filterPattern, maxErrorRate); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:78:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:298:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_consensus_consensus_alignment_coordinates' requested here SEQAN_CALL_TEST(test_consensus_consensus_alignment_coordinates); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :70:1: note: expanded from here SEQAN_TEST_test_consensus_consensus_alignment_coordinates ^ In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:41: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_pigeonhole.h:463:37: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:78:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:298:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_consensus_consensus_alignment_coordinates' requested here SEQAN_CALL_TEST(test_consensus_consensus_alignment_coordinates); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :70:1: note: expanded from here SEQAN_TEST_test_consensus_consensus_alignment_coordinates ^ In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:41: In file included from /<>/include/seqan/consensus.h:46: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); ^ /<>/include/seqan/consensus/consensus_builder.h:384:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag, seqan::Score > >' requested here buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); ^ /<>/include/seqan/consensus/consensus_aligner.h:170:17: note: in instantiation of member function 'seqan::ConsensusBuilder_ > >::run' requested here consBuilder.run(store, overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:78:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:298:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_consensus_consensus_alignment_coordinates' requested here SEQAN_CALL_TEST(test_consensus_consensus_alignment_coordinates); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :70:1: note: expanded from here SEQAN_TEST_test_consensus_consensus_alignment_coordinates ^ In file included from /<>/tests/find/test_find.cpp:54: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/find/find_multiple_bfam.h:190:19: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, unsigned long>' requested here strs[i] = prefix(ndl[i], me.lmin); ^ /<>/include/seqan/find/find_pattern_base.h:255:5: note: in instantiation of function template specialization 'seqan::_reinitPattern, seqan::Alloc >, seqan::Alloc >, seqan::Oracle>' requested here _reinitPattern(me); ^ /<>/include/seqan/find/find_multiple_bfam.h:118:9: note: in instantiation of function template specialization 'seqan::setHost, seqan::Alloc >, seqan::Alloc >, seqan::MultiBfam, seqan::String >, seqan::Alloc > &>' requested here setHost(*this, std::forward(ndl)); ^ /<>/tests/find/test_find.cpp:263:41: note: in instantiation of function template specialization 'seqan::Pattern, seqan::Alloc >, seqan::Alloc >, seqan::MultiBfam >::Pattern >, seqan::Alloc > &>' requested here Pattern pattern_dna(keywords); ^ /<>/tests/find/test_find.cpp:1287:5: note: in instantiation of function template specialization 'Test_OnlineAlgMulti >' requested here Test_OnlineAlgMulti >(true); ^ /<>/tests/find/test_find.cpp:1911:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_online_multi_MultiBFAM_Oracle' requested here SEQAN_CALL_TEST(test_find_online_multi_MultiBFAM_Oracle); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :122:1: note: expanded from here SEQAN_TEST_test_find_online_multi_MultiBFAM_Oracle ^ In file included from /<>/tests/consensus_v2/test_consensus_v2.cpp:40: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:145:13: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:78:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ /<>/tests/consensus_v2/test_consensus_v2.cpp:298:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_consensus_consensus_alignment_coordinates' requested here SEQAN_CALL_TEST(test_consensus_consensus_alignment_coordinates); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :70:1: note: expanded from here SEQAN_TEST_test_consensus_consensus_alignment_coordinates ^ 8 warnings generated. [ 18%] Linking CXX executable ../../bin/test_consensus_v2 cd /<>/obj-x86_64-linux-gnu/tests/consensus_v2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus_v2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o -o ../../bin/test_consensus_v2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_consensus_v2 make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/gff_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/gff_io /<>/obj-x86_64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_gff_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/gff_io/CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/gff_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -c /<>/tests/gff_io/test_gff_io.cpp In file included from /<>/tests/gff_io/test_gff_io.cpp:37: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/gff_io/test_gff_io.h:353:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffStream(toCString(gffPath)); ^ /<>/tests/gff_io/test_gff_io.cpp:55:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_gff_stream_read_record_gff' requested here SEQAN_CALL_TEST(test_store_io_gff_stream_read_record_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :102:1: note: expanded from here SEQAN_TEST_test_store_io_gff_stream_read_record_gff ^ In file included from /<>/tests/gff_io/test_gff_io.cpp:37: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/gff_io/test_gff_io.h:353:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffStream(toCString(gffPath)); ^ /<>/tests/gff_io/test_gff_io.cpp:55:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_gff_stream_read_record_gff' requested here SEQAN_CALL_TEST(test_store_io_gff_stream_read_record_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :102:1: note: expanded from here SEQAN_TEST_test_store_io_gff_stream_read_record_gff ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/gff_io/test_gff_io.cpp:37: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/gff_io/test_gff_io.h:353:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffStream(toCString(gffPath)); ^ /<>/tests/gff_io/test_gff_io.cpp:55:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_gff_stream_read_record_gff' requested here SEQAN_CALL_TEST(test_store_io_gff_stream_read_record_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :102:1: note: expanded from here SEQAN_TEST_test_store_io_gff_stream_read_record_gff ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/gff_io/test_gff_io.cpp:37: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/gff_io/test_gff_io.h:353:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffStream(toCString(gffPath)); ^ /<>/tests/gff_io/test_gff_io.cpp:55:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_gff_stream_read_record_gff' requested here SEQAN_CALL_TEST(test_store_io_gff_stream_read_record_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :102:1: note: expanded from here SEQAN_TEST_test_store_io_gff_stream_read_record_gff ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/gff_io/test_gff_io.cpp:37: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/gff_io/test_gff_io.h:353:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffStream(toCString(gffPath)); ^ /<>/tests/gff_io/test_gff_io.cpp:55:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_gff_stream_read_record_gff' requested here SEQAN_CALL_TEST(test_store_io_gff_stream_read_record_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :102:1: note: expanded from here SEQAN_TEST_test_store_io_gff_stream_read_record_gff ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/gff_io/test_gff_io.cpp:37: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/gff_io/test_gff_io.h:353:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffStream(toCString(gffPath)); ^ /<>/tests/gff_io/test_gff_io.cpp:55:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_gff_stream_read_record_gff' requested here SEQAN_CALL_TEST(test_store_io_gff_stream_read_record_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :102:1: note: expanded from here SEQAN_TEST_test_store_io_gff_stream_read_record_gff ^ 2 warnings generated. [ 18%] Linking CXX executable ../../bin/test_find cd /<>/obj-x86_64-linux-gnu/tests/find && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find.dir/test_find.cpp.o -o ../../bin/test_find -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_find make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_algorithms /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_algorithms /<>/obj-x86_64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_algorithms make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_algorithms && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -c /<>/tests/graph_algorithms/test_graph_algorithms.cpp 6 warnings generated. [ 18%] Linking CXX executable ../../bin/test_gff_io cd /<>/obj-x86_64-linux-gnu/tests/gff_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -o ../../bin/test_gff_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_gff_io make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_align /<>/obj-x86_64-linux-gnu/tests/graph_align/CMakeFiles/test_graph_align.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/graph_align/CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o -c /<>/tests/graph_align/test_graph_align.cpp In file included from /<>/tests/graph_align/test_graph_align.cpp:47: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:47: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:47: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:47: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:47: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String >, seqan::Owner >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/tests/graph_align/test_graph_match_refinement.h:71:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String >, seqan::Owner > >' requested here matchRefinement(matches,seq_set,ali_graph); ^ /<>/tests/graph_align/test_graph_align.cpp:71:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_RefineMatchesSelfEdges' requested here SEQAN_CALL_TEST(RefineMatchesSelfEdges); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :46:1: note: expanded from here SEQAN_TEST_RefineMatchesSelfEdges ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:49: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::Align >, seqan::Tag >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct >, seqan::Tag > *, seqan::Align >, seqan::Tag > >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct >, seqan::Tag > *, seqan::Align >, seqan::Tag > >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault >, seqan::Tag > *, seqan::Align >, seqan::Tag > *, seqan::Align >, seqan::Tag > *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMovePointer >, seqan::Tag > >' requested here _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: in instantiation of function template specialization 'seqan::arrayConstructMove >, seqan::Tag > >' requested here arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/include/seqan/sequence/string_base.h:1697:5: note: in instantiation of function template specialization 'seqan::_reserveStorage >, seqan::Tag >, seqan::Alloc, int, seqan::TagGenerous_>' requested here _reserveStorage(seq, new_capacity, tag); ^ /<>/include/seqan/sequence/sequence_interface.h:1136:12: note: in instantiation of function template specialization 'seqan::reserve >, seqan::Tag >, seqan::Alloc, int, seqan::TagGenerous_>' requested here return reserve(std::forward(me), new_capacity, typename DefaultOverflowExplicit::Type()); ^ /<>/tests/graph_align/test_graph_match_refinement.h:437:5: note: in instantiation of function template specialization 'seqan::reserve >, seqan::Tag >, seqan::Alloc > &, int>' requested here reserve(alis,numSequencePairs*numAlignments); ^ /<>/tests/graph_align/test_graph_align.cpp:74:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_RefineAlign' requested here SEQAN_CALL_TEST(RefineAlign); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :48:1: note: expanded from here SEQAN_TEST_RefineAlign ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:47: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman >, seqan::Tag, seqan::String >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String >, seqan::Tag, seqan::String >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/tests/graph_align/test_graph_match_refinement.h:381:18: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String >, seqan::Tag >' requested here if (!nextLocalAlignment(ali, enumerator)) ^ /<>/tests/graph_align/test_graph_match_refinement.h:440:5: note: in instantiation of function template specialization 'seqan::getAlignments >, seqan::Tag >, seqan::String >, seqan::Owner >, seqan::Score > >' requested here getAlignments(alis,seq_set,score_type,numAlignments,cutoff); ^ /<>/tests/graph_align/test_graph_align.cpp:74:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_RefineAlign' requested here SEQAN_CALL_TEST(RefineAlign); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :48:1: note: expanded from here SEQAN_TEST_RefineAlign ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:47: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman >, seqan::Tag, seqan::String >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String >, seqan::Tag, seqan::String >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/tests/graph_align/test_graph_match_refinement.h:381:18: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String >, seqan::Tag >' requested here if (!nextLocalAlignment(ali, enumerator)) ^ /<>/tests/graph_align/test_graph_match_refinement.h:440:5: note: in instantiation of function template specialization 'seqan::getAlignments >, seqan::Tag >, seqan::String >, seqan::Owner >, seqan::Score > >' requested here getAlignments(alis,seq_set,score_type,numAlignments,cutoff); ^ /<>/tests/graph_align/test_graph_align.cpp:74:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_RefineAlign' requested here SEQAN_CALL_TEST(RefineAlign); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :48:1: note: expanded from here SEQAN_TEST_RefineAlign ^ In file included from /<>/tests/graph_align/test_graph_align.cpp:49: In file included from /<>/include/seqan/seq_io.h:55: In file included from /<>/include/seqan/seq_io/bam_sam.h:39: In file included from /<>/include/seqan/bam_io.h:50: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/graph_align/graph_algorithm_refine_align.h:133:13: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' first required here row0_it = iter(row(segment,0),toViewPosition(row(segment,0),pos_i)); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:361:54: note: in instantiation of function template specialization 'seqan::_getRefinedMatchScore, seqan::StringSet >, seqan::Owner > >, seqan::String >, seqan::Tag, unsigned long>' requested here typename Value::Type score = _getRefinedMatchScore(score_type,seqs,*ali_it,act_pos,pos_j,fragmentLength(ali_g,act_knot),fragmentLength(ali_g,vd));//,fragmentLength(ali_g,vd)); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:422:5: note: in instantiation of function template specialization 'seqan::_makeRefinedGraphEdges >, seqan::Tag >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, std::map, std::allocator > >, bool, seqan::Score >, seqan::Graph >, seqan::Dependent > >, unsigned int, seqan::Tag > > >' requested here _makeRefinedGraphEdges(alis,pm,seqs,seq_map,score_type,ali_g,tag); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:643:5: note: in instantiation of function template specialization 'seqan::_makeAlignmentGraphFromRefinedSegments >, seqan::Tag >, seqan::Alloc >, seqan::Score >, seqan::String >, seqan::Owner >, seqan::Graph >, seqan::Dependent > >, unsigned int, seqan::Tag > >, std::map, std::allocator > >, seqan::TagExactRefinement_>' requested here _makeAlignmentGraphFromRefinedSegments(all_nodes,alis,score_type,seq,seq_map,ali_graph,tag,annotation); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:664:5: note: in instantiation of function template specialization 'seqan::matchRefinement >, seqan::Tag >, seqan::Alloc >, bool, seqan::Graph >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String >, seqan::Owner >, seqan::Score >, seqan::TagExactRefinement_>' requested here matchRefinement(alis,seq,score_type,ali_graph,1,anno,ExactRefinement()); ^ /<>/tests/graph_align/test_graph_match_refinement.h:446:5: note: in instantiation of function template specialization 'seqan::matchRefinement >, seqan::Tag >, seqan::Alloc >, int, seqan::Tag, seqan::Graph >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String >, seqan::Owner > >' requested here matchRefinement(alis,seq_set,score_type,ali_graph); ^ /<>/tests/graph_align/test_graph_align.cpp:74:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_RefineAlign' requested here SEQAN_CALL_TEST(RefineAlign); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :48:1: note: expanded from here SEQAN_TEST_RefineAlign ^ [ 18%] Linking CXX executable ../../bin/test_graph_algorithms cd /<>/obj-x86_64-linux-gnu/tests/graph_algorithms && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_algorithms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -o ../../bin/test_graph_algorithms -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_graph_algorithms make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_msa /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_msa /<>/obj-x86_64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_msa make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 18%] Building CXX object tests/graph_msa/CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_msa && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -c /<>/tests/graph_msa/test_graph_msa.cpp In file included from /<>/tests/graph_msa/test_graph_msa.cpp:47: In file included from /<>/include/seqan/graph_msa.h:40: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:191:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:203:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, unsigned int, seqan::Tag >' requested here buildAlignmentGraph(matches, outGraph, FrequencyCounting() ); ^ /<>/tests/graph_msa/test_graph_tcoffee.h:73:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, unsigned int, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, g, FrequencyCounting() ); ^ 9 warnings generated. [ 19%] Linking CXX executable ../../bin/test_graph_align cd /<>/obj-x86_64-linux-gnu/tests/graph_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o -o ../../bin/test_graph_align -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_align make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_utils.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_types_utils make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o -c /<>/tests/graph_types/test_graph_types_utils.cpp [ 19%] Linking CXX executable ../../bin/test_graph_types_utils cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_utils.dir/test_graph_types_utils.cpp.o -o ../../bin/test_graph_types_utils -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_types_utils make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_types.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_types_types make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o -c /<>/tests/graph_types/test_graph_types_types.cpp [ 19%] Linking CXX executable ../../bin/test_graph_types_types cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_types.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o -o ../../bin/test_graph_types_types -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_types_types make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_types_iterators make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o -c /<>/tests/graph_types/test_graph_types_iterators.cpp 1 warning generated. [ 19%] Linking CXX executable ../../bin/test_graph_msa cd /<>/obj-x86_64-linux-gnu/tests/graph_msa && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_msa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -o ../../bin/test_graph_msa -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_msa make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_derived.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_types_derived make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o -c /<>/tests/graph_types/test_graph_types_derived.cpp In file included from /<>/tests/graph_types/test_graph_types_derived.cpp:34: In file included from /<>/include/seqan/graph_types.h:42: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/graph_types/test_graph_types_derived.cpp:148:44: note: in instantiation of function template specialization 'seqan::prefix >, unsigned int>' requested here SEQAN_ASSERT(canParseString(g, prefix(str, i))); ^ /<>/tests/graph_types/test_graph_types_derived.cpp:159:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_graph_types_derived_set_oracle' requested here SEQAN_CALL_TEST(test_graph_types_derived_set_oracle); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :25:1: note: expanded from here SEQAN_TEST_test_graph_types_derived_set_oracle ^ 1 warning generated. [ 19%] Linking CXX executable ../../bin/test_graph_types_derived cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_derived.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o -o ../../bin/test_graph_types_derived -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_types_derived make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_types_property_map make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -c /<>/tests/graph_types/test_graph_types_property_map.cpp [ 19%] Linking CXX executable ../../bin/test_graph_types_iterators cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_iterators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o -o ../../bin/test_graph_types_iterators -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_types_iterators make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_swift.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_swift make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/index/CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -c /<>/tests/index/test_index_swift.cpp [ 19%] Linking CXX executable ../../bin/test_graph_types_property_map cd /<>/obj-x86_64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_property_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -o ../../bin/test_graph_types_property_map -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_types_property_map make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake --color= Scanning dependencies of target test_find2_index_approx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/index/CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -c /<>/tests/index/test_find2_index_approx.cpp In file included from /<>/tests/index/test_index_swift.cpp:2: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: in instantiation of function template specialization 'seqan::host, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >, seqan::Swift >' requested here TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/index/find_swift.h:1929:9: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >, double, int, seqan::Tag > >' requested here _patternInit(pattern, errorRate, minLength); ^ /<>/include/seqan/index/find_swift.h:1913:12: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >, seqan::Tag >, int>' requested here return find(finder, pattern, errorRate, 0); ^ /<>/tests/index/test_index_swift.cpp:28:12: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Swift >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<10> >, seqan::Tag > >, void>' requested here while (find(swiftFinder, swiftPattern, 0.1)) ^ /<>/tests/index/test_index_swift.cpp:34:2: note: in instantiation of function template specialization 'SEQAN_TEST_test_index_swift_find_empty_pattern' requested here SEQAN_CALL_TEST(test_index_swift_find_empty_pattern); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :52:1: note: expanded from here SEQAN_TEST_test_index_swift_find_empty_pattern ^ In file included from /<>/tests/index/test_find2_index_approx.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_find2_index_approx.h:395:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_find2_index_approx.h:420:5: note: in instantiation of function template specialization 'testOptimalSearchScheme<1, 1, seqan::Tag >' requested here testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); ^ /<>/tests/index/test_find2_index_approx.cpp:42:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find2_index_approx_hamming' requested here SEQAN_CALL_TEST(test_find2_index_approx_hamming); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :63:1: note: expanded from here SEQAN_TEST_test_find2_index_approx_hamming ^ In file included from /<>/tests/index/test_find2_index_approx.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_find2_index_approx.h:395:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_find2_index_approx.h:420:5: note: in instantiation of function template specialization 'testOptimalSearchScheme<1, 1, seqan::Tag >' requested here testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); ^ /<>/tests/index/test_find2_index_approx.cpp:42:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find2_index_approx_hamming' requested here SEQAN_CALL_TEST(test_find2_index_approx_hamming); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :63:1: note: expanded from here SEQAN_TEST_test_find2_index_approx_hamming ^ In file included from /<>/tests/index/test_find2_index_approx.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_find2_index_approx.h:395:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_find2_index_approx.h:420:5: note: in instantiation of function template specialization 'testOptimalSearchScheme<1, 1, seqan::Tag >' requested here testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); ^ /<>/tests/index/test_find2_index_approx.cpp:42:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find2_index_approx_hamming' requested here SEQAN_CALL_TEST(test_find2_index_approx_hamming); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :63:1: note: expanded from here SEQAN_TEST_test_find2_index_approx_hamming ^ In file included from /<>/tests/index/test_find2_index_approx.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_find2_index_approx.h:395:15: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_find2_index_approx.h:420:5: note: in instantiation of function template specialization 'testOptimalSearchScheme<1, 1, seqan::Tag >' requested here testOptimalSearchScheme(OptimalSearchSchemes<0, 0>::VALUE, HammingDistance()); ^ /<>/tests/index/test_find2_index_approx.cpp:42:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find2_index_approx_hamming' requested here SEQAN_CALL_TEST(test_find2_index_approx_hamming); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :63:1: note: expanded from here SEQAN_TEST_test_find2_index_approx_hamming ^ 1 warning generated. [ 19%] Linking CXX executable ../../bin/test_index_swift cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_swift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -o ../../bin/test_index_swift -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_index_swift make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake --color= Scanning dependencies of target test_find_backtracking make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 19%] Building CXX object tests/index/CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -c /<>/tests/index/test_find_backtracking.cpp In file included from /<>/tests/index/test_find_backtracking.cpp:38: In file included from /<>/tests/index/test_find_base.h:40: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/find2_backtracking.h:1348:19: note: in instantiation of member function 'seqan::Iter >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TTextIterator textIt(text); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:38: In file included from /<>/tests/index/test_find_base.h:40: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_sa_stree.h:112:8: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here struct VertexSA : public VertexEsa ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/find2_backtracking.h:1348:19: note: in instantiation of member function 'seqan::Iter >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TTextIterator textIt(text); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/find2_backtracking.h:1349:22: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TPatternIterator patternIt(pattern); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/find2_backtracking.h:1349:22: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TPatternIterator patternIt(pattern); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/find2_backtracking.h:1349:22: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TPatternIterator patternIt(pattern); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/find2_backtracking.h:1349:22: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TPatternIterator patternIt(pattern); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/find2_backtracking.h:1349:22: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TPatternIterator patternIt(pattern); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/find2_backtracking.h:1349:22: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TPatternIterator patternIt(pattern); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ In file included from /<>/tests/index/test_find_backtracking.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/find2_backtracking.h:1349:22: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TPatternIterator patternIt(pattern); ^ /<>/tests/index/test_find_backtracking.h:210:5: note: in instantiation of function template specialization 'seqan::_find >, seqan::IndexSa, seqan::StringSet >, seqan::Owner > >, seqan::IndexSa, seqan::Tag, seqan::Tag, int, FinderTester >, seqan::IndexSa >, seqan::Index >, seqan::Owner > >, seqan::IndexSa >, seqan::Backtracking, seqan::Tag > > >' requested here _find(finder, textIndex, patternIndex, 1, tester); ^ /<>/tests/index/test_find_backtracking.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana' requested here SEQAN_CALL_TEST(test_find_backtracking_multiple_hamming_banana_vs_ada_ana); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_find_backtracking_multiple_hamming_banana_vs_ada_ana ^ 4 warnings generated. [ 20%] Linking CXX executable ../../bin/test_find2_index_approx cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find2_index_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -o ../../bin/test_find2_index_approx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target test_find2_index_approx make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_view make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object tests/index/CMakeFiles/test_index_view.dir/test_index_view.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_view.dir/test_index_view.cpp.o -c /<>/tests/index/test_index_view.cpp 9 warnings generated. [ 20%] Linking CXX executable ../../bin/test_find_backtracking cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find_backtracking.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -o ../../bin/test_find_backtracking -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target test_find_backtracking make -f tests/index/CMakeFiles/test_index_stree_iterators.dir/build.make tests/index/CMakeFiles/test_index_stree_iterators.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_stree_iterators.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_stree_iterators make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_stree_iterators.dir/build.make tests/index/CMakeFiles/test_index_stree_iterators.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object tests/index/CMakeFiles/test_index_stree_iterators.dir/test_index_stree_iterators.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_stree_iterators.dir/test_index_stree_iterators.cpp.o -c /<>/tests/index/test_index_stree_iterators.cpp In file included from /<>/tests/index/test_index_view.cpp:38: In file included from /<>/tests/index/test_index_view.h:40: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index >, void>, seqan::IndexSa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/include/seqan/index/find2_vstree_factory.h:237:23: note: in implicit copy assignment operator for 'seqan::Index >, void>, seqan::IndexSa >' first required here host(factoryView) = view(_host(factory, typename IsView::Type())); ^ /<>/tests/index/test_index_view.h:62:33: note: in instantiation of function template specialization 'seqan::view >, seqan::IndexSa >, seqan::Preorder>' requested here TTFactoryView factoryView = view(factory); ^ /<>/tests/index/test_index_view.h:147:5: note: in instantiation of function template specialization 'compareTreeIterators >, seqan::IndexSa >, seqan::Index >, void>, seqan::IndexSa > >' requested here compareTreeIterators(index, indexView); ^ /<>/tests/index/test_index_view.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_index_view_basic' requested here SEQAN_CALL_TEST(test_index_view_basic); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_test_index_view_basic ^ In file included from /<>/tests/index/test_index_view.cpp:38: In file included from /<>/tests/index/test_index_view.h:40: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexSa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexSa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexSa >, seqan::Index >, seqan::IndexSa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexSa >, seqan::Index >, seqan::IndexSa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexSa > >' requested here create(me); ^ /<>/include/seqan/index/find2_vstree_factory.h:192:12: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexSa > >' requested here return value(factory._index); ^ /<>/include/seqan/index/find2_vstree_factory.h:237:30: note: in instantiation of function template specialization 'seqan::_host >, seqan::IndexSa >, seqan::TopDown > >' requested here host(factoryView) = view(_host(factory, typename IsView::Type())); ^ /<>/tests/index/test_index_view.h:62:33: note: in instantiation of function template specialization 'seqan::view >, seqan::IndexSa >, seqan::Preorder>' requested here TTFactoryView factoryView = view(factory); ^ /<>/tests/index/test_index_view.h:147:5: note: in instantiation of function template specialization 'compareTreeIterators >, seqan::IndexSa >, seqan::Index >, void>, seqan::IndexSa > >' requested here compareTreeIterators(index, indexView); ^ /<>/tests/index/test_index_view.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_index_view_basic' requested here SEQAN_CALL_TEST(test_index_view_basic); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_test_index_view_basic ^ In file included from /<>/tests/index/test_index_view.cpp:38: In file included from /<>/tests/index/test_index_view.h:40: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear >, void>, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, void>, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, void>, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/find2_vstree_factory.h:314:58: note: in instantiation of member function 'seqan::Iter >, void>, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here Iter > > > it(_host(factory, typename IsView::Type())); ^ /<>/tests/index/test_index_view.h:63:21: note: in instantiation of function template specialization 'seqan::getObject >, void>, seqan::IndexSa >, seqan::Preorder, unsigned int>' requested here TIterView it2 = getObject(factoryView, 0u); ^ /<>/tests/index/test_index_view.h:147:5: note: in instantiation of function template specialization 'compareTreeIterators >, seqan::IndexSa >, seqan::Index >, void>, seqan::IndexSa > >' requested here compareTreeIterators(index, indexView); ^ /<>/tests/index/test_index_view.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_index_view_basic' requested here SEQAN_CALL_TEST(test_index_view_basic); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_test_index_view_basic ^ In file included from /<>/tests/index/test_index_view.cpp:38: In file included from /<>/tests/index/test_index_view.h:40: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_sa_stree.h:112:8: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here struct VertexSA : public VertexEsa ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear >, void>, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, void>, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, void>, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/find2_vstree_factory.h:314:58: note: in instantiation of member function 'seqan::Iter >, void>, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here Iter > > > it(_host(factory, typename IsView::Type())); ^ /<>/tests/index/test_index_view.h:63:21: note: in instantiation of function template specialization 'seqan::getObject >, void>, seqan::IndexSa >, seqan::Preorder, unsigned int>' requested here TIterView it2 = getObject(factoryView, 0u); ^ /<>/tests/index/test_index_view.h:147:5: note: in instantiation of function template specialization 'compareTreeIterators >, seqan::IndexSa >, seqan::Index >, void>, seqan::IndexSa > >' requested here compareTreeIterators(index, indexView); ^ /<>/tests/index/test_index_view.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_index_view_basic' requested here SEQAN_CALL_TEST(test_index_view_basic); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_test_index_view_basic ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:45: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/tests/index/test_stree_iterators.h:51:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:57:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testEmptyIndex' requested here SEQAN_CALL_TEST(testEmptyIndex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :83:1: note: expanded from here SEQAN_TEST_testEmptyIndex ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:68:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue509' requested here SEQAN_CALL_TEST(testIssue509); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :85:1: note: expanded from here SEQAN_TEST_testIssue509 ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:68:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue509' requested here SEQAN_CALL_TEST(testIssue509); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :85:1: note: expanded from here SEQAN_TEST_testIssue509 ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:68:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue509' requested here SEQAN_CALL_TEST(testIssue509); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :85:1: note: expanded from here SEQAN_TEST_testIssue509 ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:68:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue509' requested here SEQAN_CALL_TEST(testIssue509); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :85:1: note: expanded from here SEQAN_TEST_testIssue509 ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:68:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue509' requested here SEQAN_CALL_TEST(testIssue509); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :85:1: note: expanded from here SEQAN_TEST_testIssue509 ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:68:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue509' requested here SEQAN_CALL_TEST(testIssue509); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :85:1: note: expanded from here SEQAN_TEST_testIssue509 ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:68:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iterator(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue509' requested here SEQAN_CALL_TEST(testIssue509); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :85:1: note: expanded from here SEQAN_TEST_testIssue509 ^ 4 warnings generated. [ 20%] Linking CXX executable ../../bin/test_index_view cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_view.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_view.dir/test_index_view.cpp.o -o ../../bin/test_index_view -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target test_index_view make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_repeats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 21%] Building CXX object tests/index/CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -c /<>/tests/index/test_index_repeats.cpp In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:113:11: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:60:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_goDownOnEmptyString' requested here SEQAN_CALL_TEST(goDownOnEmptyString); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :89:1: note: expanded from here SEQAN_TEST_goDownOnEmptyString ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:113:11: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:60:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_goDownOnEmptyString' requested here SEQAN_CALL_TEST(goDownOnEmptyString); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :89:1: note: expanded from here SEQAN_TEST_goDownOnEmptyString ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:113:11: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:60:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_goDownOnEmptyString' requested here SEQAN_CALL_TEST(goDownOnEmptyString); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :89:1: note: expanded from here SEQAN_TEST_goDownOnEmptyString ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:738:11: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:64:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testTrieIterator' requested here SEQAN_CALL_TEST(testTrieIterator); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :97:1: note: expanded from here SEQAN_TEST_testTrieIterator ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:738:11: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:64:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testTrieIterator' requested here SEQAN_CALL_TEST(testTrieIterator); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :97:1: note: expanded from here SEQAN_TEST_testTrieIterator ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_stree_iterators.h:738:11: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:64:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testTrieIterator' requested here SEQAN_CALL_TEST(testTrieIterator); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :97:1: note: expanded from here SEQAN_TEST_testTrieIterator ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:45: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::Owner > >, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::Owner > >, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/tests/index/test_stree_iterators.h:738:11: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TIter it(index); ^ /<>/tests/index/test_index_stree_iterators.cpp:64:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testTrieIterator' requested here SEQAN_CALL_TEST(testTrieIterator); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :97:1: note: expanded from here SEQAN_TEST_testTrieIterator ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:45: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexEsa, const seqan::Tag, seqan::String > >' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/tests/index/test_stree_iterators.h:682:16: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexEsa, const seqan::Tag, seqan::Pattern >, void> >' requested here while (find(finder, pattern)) ^ /<>/tests/index/test_stree_iterators.h:710:5: note: in instantiation of function template specialization 'seqan::testFind >' requested here testFind(); ^ /<>/tests/index/test_index_stree_iterators.cpp:66:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testFind_Esa_Mlr' requested here SEQAN_CALL_TEST(testFind_Esa_Mlr); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :101:1: note: expanded from here SEQAN_TEST_testFind_Esa_Mlr ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/tests/index/test_stree_iterators.h:311:64: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iter > > > it1(index1); ^ /<>/tests/index/test_stree_iterators.h:367:9: note: in instantiation of function template specialization 'seqan::compareTreeIterators, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here compareTreeIterators(index1, index2); ^ /<>/tests/index/test_stree_iterators.h:373:5: note: in instantiation of function template specialization 'seqan::compareIndices, seqan::IndexWotd >' requested here compareIndices, IndexWotd<> >(); ^ /<>/tests/index/test_index_stree_iterators.cpp:67:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testCompareIndices_Esa_Wotd' requested here SEQAN_CALL_TEST(testCompareIndices_Esa_Wotd); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :103:1: note: expanded from here SEQAN_TEST_testCompareIndices_Esa_Wotd ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/tests/index/test_stree_iterators.h:311:64: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iter > > > it1(index1); ^ /<>/tests/index/test_stree_iterators.h:367:9: note: in instantiation of function template specialization 'seqan::compareTreeIterators, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here compareTreeIterators(index1, index2); ^ /<>/tests/index/test_stree_iterators.h:373:5: note: in instantiation of function template specialization 'seqan::compareIndices, seqan::IndexWotd >' requested here compareIndices, IndexWotd<> >(); ^ /<>/tests/index/test_index_stree_iterators.cpp:67:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testCompareIndices_Esa_Wotd' requested here SEQAN_CALL_TEST(testCompareIndices_Esa_Wotd); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :103:1: note: expanded from here SEQAN_TEST_testCompareIndices_Esa_Wotd ^ In file included from /<>/tests/index/test_index_stree_iterators.cpp:41: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/tests/index/test_stree_iterators.h:311:64: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iter > > > it1(index1); ^ /<>/tests/index/test_stree_iterators.h:367:9: note: in instantiation of function template specialization 'seqan::compareTreeIterators, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here compareTreeIterators(index1, index2); ^ /<>/tests/index/test_stree_iterators.h:373:5: note: in instantiation of function template specialization 'seqan::compareIndices, seqan::IndexWotd >' requested here compareIndices, IndexWotd<> >(); ^ /<>/tests/index/test_index_stree_iterators.cpp:67:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testCompareIndices_Esa_Wotd' requested here SEQAN_CALL_TEST(testCompareIndices_Esa_Wotd); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :103:1: note: expanded from here SEQAN_TEST_testCompareIndices_Esa_Wotd ^ [ 21%] Linking CXX executable ../../bin/test_index_repeats cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_repeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -o ../../bin/test_index_repeats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 21%] Built target test_index_repeats make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_vstree make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 21%] Building CXX object tests/index/CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -c /<>/tests/index/test_index_vstree.cpp In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_index_vstree.cpp:87:33: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here typename TestFixture::TIter it(this->index); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here TopDownIndexIteratorTest__Constructor ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_index_vstree.cpp:87:33: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here typename TestFixture::TIter it(this->index); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here TopDownIndexIteratorTest__Constructor ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_index_vstree.cpp:87:33: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here typename TestFixture::TIter it(this->index); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here TopDownIndexIteratorTest__Constructor ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/tests/index/test_index_vstree.cpp:87:33: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here typename TestFixture::TIter it(this->index); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here TopDownIndexIteratorTest__Constructor ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Alloc >, seqan::BidirectionalIndex > > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:36: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/holder_tristate.h:548:5: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here valueConstruct(ret, data); ^ /<>/include/seqan/basic/holder_tristate.h:650:21: note: in instantiation of function template specialization 'seqan::_holderAllocateObject, seqan::Packed > >, seqan::Tag >, seqan::String, seqan::Packed > > >' requested here me.data_value = _holderAllocateObject(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Packed > >, seqan::String, seqan::Packed > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) create(me); ^ /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Packed > >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here TopDownIndexIteratorTest__Constructor ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Packed > >, seqan::FMIndex > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:36: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/holder_tristate.h:548:5: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here valueConstruct(ret, data); ^ /<>/include/seqan/basic/holder_tristate.h:650:21: note: in instantiation of function template specialization 'seqan::_holderAllocateObject, seqan::Packed > >, seqan::Tag >, seqan::String, seqan::Packed > > >' requested here me.data_value = _holderAllocateObject(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Packed > >, seqan::String, seqan::Packed > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: (skipping 9 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) create(me); ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Packed > >, seqan::FMIndex > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Packed > >, seqan::FMIndex > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Packed > >, seqan::FMIndex > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'TopDownIndexIteratorTest__Constructor, seqan::Packed > >, seqan::FMIndex > > >::TopDownIndexIteratorTest__Constructor' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 24 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 24 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_vstree.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 24 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_vstree.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(TopDownIndexIteratorTest, Constructor) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 19 warnings generated. [ 21%] Linking CXX executable ../../bin/test_index_stree_iterators cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_stree_iterators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_stree_iterators.dir/test_index_stree_iterators.cpp.o -o ../../bin/test_index_stree_iterators -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 21%] Built target test_index_stree_iterators make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_creation make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 21%] Building CXX object tests/index/CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -c /<>/tests/index/test_index_creation.cpp 21 warnings generated. [ 22%] Linking CXX executable ../../bin/test_index_vstree cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_vstree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -o ../../bin/test_index_vstree -lrt -lz -lbz2 In file included from /<>/tests/index/test_index_creation.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/index/test_index_creation.cpp:42: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/index/test_index_creation.cpp:42: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_vstree make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/DependInfo.cmake --color= In file included from /<>/tests/index/test_index_creation.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ Scanning dependencies of target test_index_sa_bwtwalk make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -c /<>/tests/index/test_index_sa_bwtwalk.cpp In file included from /<>/tests/index/test_index_creation.cpp:43: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc >, seqan::Tag >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc >, seqan::Tag >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/tests/index/test_index_creation.h:62:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iter(index); ^ /<>/tests/index/test_index_creation.cpp:54:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexModifiedStringReverseEsa' requested here SEQAN_CALL_TEST(testIndexModifiedStringReverseEsa); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :72:1: note: expanded from here SEQAN_TEST_testIndexModifiedStringReverseEsa ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Tag >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_index_creation.h:75:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here Iterator >::Type iter(index); ^ /<>/tests/index/test_index_creation.cpp:55:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexModifiedStringReverseFM' requested here SEQAN_CALL_TEST(testIndexModifiedStringReverseFM); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :74:1: note: expanded from here SEQAN_TEST_testIndexModifiedStringReverseFM ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::Tag >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Tag >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_index_creation.h:75:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here Iterator >::Type iter(index); ^ /<>/tests/index/test_index_creation.cpp:55:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexModifiedStringReverseFM' requested here SEQAN_CALL_TEST(testIndexModifiedStringReverseFM); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :74:1: note: expanded from here SEQAN_TEST_testIndexModifiedStringReverseFM ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::Tag >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::Tag >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Tag >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_index_creation.h:75:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here Iterator >::Type iter(index); ^ /<>/tests/index/test_index_creation.cpp:55:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexModifiedStringReverseFM' requested here SEQAN_CALL_TEST(testIndexModifiedStringReverseFM); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :74:1: note: expanded from here SEQAN_TEST_testIndexModifiedStringReverseFM ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Tag >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Tag >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/tests/index/test_index_creation.h:75:40: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here Iterator >::Type iter(index); ^ /<>/tests/index/test_index_creation.cpp:55:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexModifiedStringReverseFM' requested here SEQAN_CALL_TEST(testIndexModifiedStringReverseFM); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :74:1: note: expanded from here SEQAN_TEST_testIndexModifiedStringReverseFM ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/tests/index/test_index_creation.h:117:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here indexCreate(index1, EsaSA(), Skew7()); ^ /<>/tests/index/test_index_creation.cpp:58:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue519' requested here SEQAN_CALL_TEST(testIssue519); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_testIssue519 ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/tests/index/test_index_creation.h:117:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here indexCreate(index1, EsaSA(), Skew7()); ^ /<>/tests/index/test_index_creation.cpp:58:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue519' requested here SEQAN_CALL_TEST(testIssue519); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_testIssue519 ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/tests/index/test_index_creation.h:117:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here indexCreate(index1, EsaSA(), Skew7()); ^ /<>/tests/index/test_index_creation.cpp:58:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue519' requested here SEQAN_CALL_TEST(testIssue519); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_testIssue519 ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/tests/index/test_index_creation.h:117:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here indexCreate(index1, EsaSA(), Skew7()); ^ /<>/tests/index/test_index_creation.cpp:58:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue519' requested here SEQAN_CALL_TEST(testIssue519); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_testIssue519 ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/tests/index/test_index_creation.h:117:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here indexCreate(index1, EsaSA(), Skew7()); ^ /<>/tests/index/test_index_creation.cpp:58:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue519' requested here SEQAN_CALL_TEST(testIssue519); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_testIssue519 ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/tests/index/test_index_creation.h:117:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here indexCreate(index1, EsaSA(), Skew7()); ^ /<>/tests/index/test_index_creation.cpp:58:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIssue519' requested here SEQAN_CALL_TEST(testIssue519); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :80:1: note: expanded from here SEQAN_TEST_testIssue519 ^ In file included from /<>/tests/index/test_index_creation.cpp:42: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/index/test_index_creation.h:143:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn inputFile(path.c_str()); ^ /<>/tests/index/test_index_creation.cpp:59:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCreation' requested here SEQAN_CALL_TEST(testIndexCreation); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCreation ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/index/test_index_creation.cpp:42: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/tests/index/test_index_creation.h:145:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(id, text, inputFile); ^ /<>/tests/index/test_index_creation.cpp:59:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCreation' requested here SEQAN_CALL_TEST(testIndexCreation); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCreation ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 10 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_skew3.h:269:17: note: in instantiation of function template specialization 'seqan::_skew3Extend >, seqan::Source >, seqan::Caster >, seqan::Pool >, seqan::MapperSpec >, unsigned long>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned long>, unsigned long, seqan::File > > > > >' requested here _skew3Extend(textIn, names_linear, sortedS0, sortedS12); ^ /<>/include/seqan/index/index_skew3.h:218:13: note: in instantiation of function template specialization 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew3>::process >, seqan::Source >, seqan::Caster > >' requested here process(_textIn); ^ /<>/include/seqan/index/index_shims.h:69:22: note: in instantiation of member function 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew3>::Pipe' requested here creator_t creator(unsigner); ^ /<>/tests/index/test_index_creation.h:191:5: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::String >, seqan::Skew3>' requested here _createSuffixArrayPipelining(sa, text, Skew3()); ^ /<>/tests/index/test_index_creation.cpp:59:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCreation' requested here SEQAN_CALL_TEST(testIndexCreation); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCreation ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 10 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_skew7.h:362:17: note: in instantiation of function template specialization 'seqan::_skew7Extend >, seqan::Source >, seqan::Caster >, seqan::Pool >, seqan::MapperSpec >, unsigned long>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned long>, unsigned long, seqan::File > > > > >' requested here _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); ^ /<>/include/seqan/index/index_skew7.h:312:13: note: in instantiation of function template specialization 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew7>::process >, seqan::Source >, seqan::Caster > >' requested here process(_textIn); ^ /<>/include/seqan/index/index_shims.h:69:22: note: in instantiation of member function 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew7>::Pipe' requested here creator_t creator(unsigner); ^ /<>/tests/index/test_index_creation.h:197:5: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::String >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, text, Skew7()); ^ /<>/tests/index/test_index_creation.cpp:59:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCreation' requested here SEQAN_CALL_TEST(testIndexCreation); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCreation ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 10 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_skew7.h:362:17: note: in instantiation of function template specialization 'seqan::_skew7Extend >, seqan::Source >, seqan::Caster >, seqan::Pool >, seqan::MapperSpec >, unsigned long>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned long>, unsigned long, seqan::File > > > > >' requested here _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); ^ /<>/include/seqan/index/index_skew7.h:312:13: note: in instantiation of function template specialization 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew7>::process >, seqan::Source >, seqan::Caster > >' requested here process(_textIn); ^ /<>/include/seqan/index/index_shims.h:69:22: note: in instantiation of member function 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew7>::Pipe' requested here creator_t creator(unsigner); ^ /<>/tests/index/test_index_creation.h:197:5: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::String >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, text, Skew7()); ^ /<>/tests/index/test_index_creation.cpp:59:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCreation' requested here SEQAN_CALL_TEST(testIndexCreation); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCreation ^ In file included from /<>/tests/index/test_index_creation.cpp:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 10 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_skew7.h:362:17: note: in instantiation of function template specialization 'seqan::_skew7Extend >, seqan::Source >, seqan::Caster >, seqan::Pool >, seqan::MapperSpec >, unsigned long>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned long, seqan::File > > > >, seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned long>, unsigned long, seqan::File > > > > >' requested here _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124); ^ /<>/include/seqan/index/index_skew7.h:312:13: note: in instantiation of function template specialization 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew7>::process >, seqan::Source >, seqan::Caster > >' requested here process(_textIn); ^ /<>/include/seqan/index/index_shims.h:69:22: note: in instantiation of member function 'seqan::Pipe >, seqan::Source >, seqan::Caster >, seqan::Skew7>::Pipe' requested here creator_t creator(unsigner); ^ /<>/tests/index/test_index_creation.h:197:5: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::String >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, text, Skew7()); ^ /<>/tests/index/test_index_creation.cpp:59:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCreation' requested here SEQAN_CALL_TEST(testIndexCreation); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCreation ^ In file included from /<>/tests/index/test_index_sa_bwtwalk.cpp:42: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/index/test_index_sa_bwtwalk.cpp:42: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/index/test_index_sa_bwtwalk.cpp:42: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/index/test_index_sa_bwtwalk.cpp:42: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/index/test_index_sa_bwtwalk.cpp:42: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/index/test_sa_bwtwalk.h:120:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn inputFile(path.c_str()); ^ /<>/tests/index/test_index_sa_bwtwalk.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testBWTWalk' requested here SEQAN_CALL_TEST(testBWTWalk); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :95:1: note: expanded from here SEQAN_TEST_testBWTWalk ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/index/test_index_sa_bwtwalk.cpp:42: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/tests/index/test_sa_bwtwalk.h:122:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(id, text, inputFile); ^ /<>/tests/index/test_index_sa_bwtwalk.cpp:58:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testBWTWalk' requested here SEQAN_CALL_TEST(testBWTWalk); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :95:1: note: expanded from here SEQAN_TEST_testBWTWalk ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 22%] Linking CXX executable ../../bin/test_index_sa_bwtwalk cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_sa_bwtwalk.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -o ../../bin/test_index_sa_bwtwalk -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_sa_bwtwalk make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_char_dfi make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -c /<>/tests/index/test_index_crosscompare_char_dfi.cpp [ 22%] Linking CXX executable ../../bin/test_index_crosscompare_char_dfi cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char_dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -o ../../bin/test_index_crosscompare_char_dfi -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_crosscompare_char_dfi make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_bifm.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_bifm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -c /<>/tests/index/test_index_bifm.cpp In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:161:9: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::BidirectionalIndex > > >, seqan::String >, seqan::String > >' requested here testBidirectionalIndex(index, text, revText, pattern); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:161:9: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::BidirectionalIndex > > >, seqan::String >, seqan::String > >' requested here testBidirectionalIndex(index, text, revText, pattern); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:161:9: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::BidirectionalIndex > > >, seqan::String >, seqan::String > >' requested here testBidirectionalIndex(index, text, revText, pattern); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:161:9: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::BidirectionalIndex > > >, seqan::String >, seqan::String > >' requested here testBidirectionalIndex(index, text, revText, pattern); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:161:9: note: in instantiation of function template specialization 'testBidirectionalIndex, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::String, seqan::Alloc >, seqan::String, seqan::Alloc > >' requested here testBidirectionalIndex(index, text, revText, pattern); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:161:9: note: in instantiation of function template specialization 'testBidirectionalIndex, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::String, seqan::Alloc >, seqan::String, seqan::Alloc > >' requested here testBidirectionalIndex(index, text, revText, pattern); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:161:9: note: in instantiation of function template specialization 'testBidirectionalIndex, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::String, seqan::Alloc >, seqan::String, seqan::Alloc > >' requested here testBidirectionalIndex(index, text, revText, pattern); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :65:1: note: expanded from here BidirectionalFMIndexTest__SearchInString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInString, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here /<>/tests/index/test_index_bifm.cpp:142:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:103:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TFMIter itFwd(indexFwd); ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex, seqan::Alloc >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex, seqan::Alloc >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:198:13: note: in instantiation of function template specialization 'testBidirectionalIndex, seqan::Alloc >, seqan::Owner > >, seqan::BidirectionalIndex > > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc > >' requested here testBidirectionalIndex(index, stringSet, revStringSet, pattern); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_bifm.cpp:35: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :81:1: note: expanded from here BidirectionalFMIndexTest__SearchInStringSet ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'BidirectionalFMIndexTest__SearchInStringSet, seqan::Alloc >, seqan::BidirectionalIndex > > > >::BidirectionalFMIndexTest__SearchInStringSet' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > >::make' requested here /<>/tests/index/test_index_bifm.cpp:166:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::BidirectionalIndex > > >, void> > > > > > >::make' requested here SEQAN_TYPED_TEST(BidirectionalFMIndexTest, SearchInStringSet) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 21 warnings generated. [ 22%] Linking CXX executable ../../bin/test_index_creation cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_creation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -o ../../bin/test_index_creation -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_creation make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_qgram make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -c /<>/tests/index/test_index_qgram.cpp In file included from /<>/tests/index/test_index_qgram.cpp:45: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_qgram.h:75:25: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexQGram, seqan::Tag > >, const seqan::Tag > >' requested here TIndex &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/tests/index/test_qgram_index.h:327:18: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [3]>' requested here SEQAN_ASSERT(find(finder, "be")); ^ /<>/tests/index/test_index_qgram.cpp:62:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testQGramFind' requested here SEQAN_CALL_TEST(testQGramFind); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :32:1: note: expanded from here SEQAN_TEST_testQGramFind ^ 1 warning generated. [ 22%] Linking CXX executable ../../bin/test_index_qgram cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_qgram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -o ../../bin/test_index_qgram -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_qgram make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_dna make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -c /<>/tests/index/test_index_crosscompare_dna.cpp In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:42: In file included from /<>/tests/index/test_crosscompare.h:40: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:175:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet, seqan::Alloc >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:208:5: note: in instantiation of function template specialization 'seqan::crossIndicesDna, seqan::IndexWotd >' requested here crossIndicesDna, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:52:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDna' requested here SEQAN_CALL_TEST(testIndexCrossCompareDna); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDna ^ In file included from /<>/tests/index/test_index_crosscompare_dna.cpp:42: In file included from /<>/tests/index/test_crosscompare.h:40: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/sequence/string_set_base.h:85:7: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here class StringSet; ^ /<>/tests/index/test_crosscompare.h:190:67: note: in implicit move constructor for 'seqan::StringSet, seqan::Packed > >, seqan::Owner > >' first required here StringSet, Owner > > t2 = t; ^ /<>/tests/index/test_crosscompare.h:216:5: note: in instantiation of function template specialization 'seqan::crossStringsDna, seqan::Alloc, seqan::Packed > >' requested here crossStringsDna, Alloc<>, Packed<> >(); ^ /<>/tests/index/test_index_crosscompare_dna.cpp:53:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings' requested here SEQAN_CALL_TEST(testIndexCrossCompareDnaStrings); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :84:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareDnaStrings ^ 22 warnings generated. [ 22%] Linking CXX executable ../../bin/test_index_bifm cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_bifm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -o ../../bin/test_index_bifm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_bifm make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_finder make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -c /<>/tests/index/test_index_finder.cpp In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/index/test_index_finder.cpp:74:37: note: in instantiation of function template specialization 'seqan::prefix >, unsigned int>' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::IndexSa > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::IndexSa > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:83:5: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexSa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index & other) : ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexSa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexSa >, seqan::Index >, seqan::IndexSa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexSa >, seqan::Index >, seqan::IndexSa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexSa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexSa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return container(obj); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexSa, const seqan::Tag, seqan::Segment >, seqan::PrefixSegment> >' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/tests/index/test_index_finder.cpp:74:18: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexSa, const seqan::Tag, seqan::Segment >, seqan::PrefixSegment> >' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::IndexSa > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::IndexSa > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return container(obj); ^ /<>/tests/index/test_index_finder.cpp:74:18: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexEsa, const seqan::Tag, seqan::Segment >, seqan::PrefixSegment> >' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::IndexEsa > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::IndexEsa > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/index/find_index.h:178:35: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here me.range.i1 = me.range.i2 = TIterator(); ^ /<>/include/seqan/index/find_index.h:87:13: note: in instantiation of function template specialization 'seqan::clear, seqan::Alloc >, seqan::FMIndex >, const seqan::Tag >' requested here clear(*this); ^ /<>/tests/index/test_index_finder.cpp:62:9: note: in instantiation of member function 'seqan::Finder, seqan::Alloc >, seqan::FMIndex > >, const seqan::Tag >::Finder' requested here finder(TBase::index) ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/index/find_index.h:178:35: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here me.range.i1 = me.range.i2 = TIterator(); ^ /<>/include/seqan/index/find_index.h:87:13: note: in instantiation of function template specialization 'seqan::clear, seqan::Alloc >, seqan::FMIndex >, const seqan::Tag >' requested here clear(*this); ^ /<>/tests/index/test_index_finder.cpp:62:9: note: in instantiation of member function 'seqan::Finder, seqan::Alloc >, seqan::FMIndex > >, const seqan::Tag >::Finder' requested here finder(TBase::index) ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/index/test_index_finder.cpp:74:37: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, unsigned int>' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 24 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Packed > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/index/find_index.h:178:35: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Packed > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here me.range.i1 = me.range.i2 = TIterator(); ^ /<>/include/seqan/index/find_index.h:87:13: note: in instantiation of function template specialization 'seqan::clear, seqan::Packed > >, seqan::FMIndex >, const seqan::Tag >' requested here clear(*this); ^ /<>/tests/index/test_index_finder.cpp:62:9: note: in instantiation of member function 'seqan::Finder, seqan::Packed > >, seqan::FMIndex > >, const seqan::Tag >::Finder' requested here finder(TBase::index) ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest, seqan::Packed > >, seqan::FMIndex > > >::IndexFinderTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Packed > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/index/test_index_finder.cpp:74:37: note: in instantiation of function template specialization 'seqan::prefix, seqan::Packed > >, unsigned int>' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Packed > >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Packed > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/holder_tristate.h:548:5: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here valueConstruct(ret, data); ^ /<>/include/seqan/basic/holder_tristate.h:650:21: note: in instantiation of function template specialization 'seqan::_holderAllocateObject, seqan::Packed > >, seqan::Tag >, seqan::String, seqan::Packed > > >' requested here me.data_value = _holderAllocateObject(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:887:9: note: in instantiation of function template specialization 'seqan::create, seqan::Packed > >, const seqan::String, seqan::Packed > > >' requested here create(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:924:13: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) assignValue(target_, value(source_)); ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Packed > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Packed > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/index/find_index.h:178:35: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Packed > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here me.range.i1 = me.range.i2 = TIterator(); ^ /<>/include/seqan/index/find_index.h:87:13: note: in instantiation of function template specialization 'seqan::clear, seqan::Packed > >, seqan::FMIndex >, const seqan::Tag >' requested here clear(*this); ^ /<>/tests/index/test_index_finder.cpp:62:9: note: in instantiation of member function 'seqan::Finder, seqan::Packed > >, seqan::FMIndex > >, const seqan::Tag >::Finder' requested here finder(TBase::index) ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest, seqan::Packed > >, seqan::FMIndex > > >::IndexFinderTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Packed > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/index/test_index_finder.cpp:74:37: note: in instantiation of function template specialization 'seqan::prefix, seqan::Packed > >, unsigned int>' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Packed > >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Packed > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/holder_tristate.h:548:5: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here valueConstruct(ret, data); ^ /<>/include/seqan/basic/holder_tristate.h:650:21: note: in instantiation of function template specialization 'seqan::_holderAllocateObject, seqan::Packed > >, seqan::Tag >, seqan::String, seqan::Packed > > >' requested here me.data_value = _holderAllocateObject(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:887:9: note: in instantiation of function template specialization 'seqan::create, seqan::Packed > >, const seqan::String, seqan::Packed > > >' requested here create(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:924:13: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) assignValue(target_, value(source_)); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 24 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 24 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 24 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/index/find_index.h:178:35: note: in implicit copy assignment operator for 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here me.range.i1 = me.range.i2 = TIterator(); ^ /<>/include/seqan/index/find_index.h:87:13: note: in instantiation of function template specialization 'seqan::clear >, seqan::FMIndex >, const seqan::Tag >' requested here clear(*this); ^ /<>/tests/index/test_index_finder.cpp:62:9: note: in instantiation of member function 'seqan::Finder >, seqan::FMIndex > >, const seqan::Tag >::Finder' requested here finder(TBase::index) ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest >, seqan::FMIndex > > >::IndexFinderTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/index/find_index.h:178:35: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here me.range.i1 = me.range.i2 = TIterator(); ^ /<>/include/seqan/index/find_index.h:87:13: note: in instantiation of function template specialization 'seqan::clear, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex >, const seqan::Tag >' requested here clear(*this); ^ /<>/tests/index/test_index_finder.cpp:62:9: note: in instantiation of member function 'seqan::Finder, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::Finder' requested here finder(TBase::index) ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > >::IndexFinderTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::Owner > > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::Owner > > >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/index/test_index_finder.cpp:74:37: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, seqan::Owner > > >, unsigned int>' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 26 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 26 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 26 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 28 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 28 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 28 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Owner > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/index/find_index.h:178:35: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here me.range.i1 = me.range.i2 = TIterator(); ^ /<>/include/seqan/index/find_index.h:87:13: note: in instantiation of function template specialization 'seqan::clear >, seqan::Owner > >, seqan::FMIndex >, const seqan::Tag >' requested here clear(*this); ^ /<>/tests/index/test_index_finder.cpp:62:9: note: in instantiation of member function 'seqan::Finder >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::Finder' requested here finder(TBase::index) ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest >, seqan::Owner > >, seqan::FMIndex > > >::IndexFinderTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::Owner > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > > >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/index/test_index_finder.cpp:74:37: note: in instantiation of function template specialization 'seqan::prefix >, seqan::Owner > > >, unsigned int>' requested here SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u))); ^ /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::Owner > >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :57:1: note: expanded from here IndexFinderTest__FindFirstChar ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__FindFirstChar >, seqan::Owner > >, seqan::FMIndex > > >::IndexFinderTest__FindFirstChar' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, void> >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 27 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 27 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 27 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/tests/index/test_index_finder.cpp:72:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/tests/index/test_index_finder.cpp:90:40: note: in instantiation of member function 'seqan::Iter, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iter(index); ^ /<>/tests/index/test_index_finder.cpp:85:1: note: in instantiation of member function 'IndexFinderTest__StdString >, seqan::IndexSa > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, StdString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :95:1: note: expanded from here IndexFinderTest__StdString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__StdString >, seqan::IndexSa > >::IndexFinderTest__StdString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_finder.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, StdString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_finder.cpp:37: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_sa_stree.h:112:8: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here struct VertexSA : public VertexEsa ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/tests/index/test_index_finder.cpp:90:40: note: in instantiation of member function 'seqan::Iter, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here Iterator >::Type iter(index); ^ /<>/tests/index/test_index_finder.cpp:85:1: note: in instantiation of member function 'IndexFinderTest__StdString >, seqan::IndexSa > >::runTest' requested here SEQAN_TYPED_TEST(IndexFinderTest, StdString) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :95:1: note: expanded from here IndexFinderTest__StdString ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexFinderTest__StdString >, seqan::IndexSa > >::IndexFinderTest__StdString' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_finder.cpp:85:1: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::IndexSa >, seqan::TagList >, seqan::IndexEsa >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexFinderTest, StdString) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 9 warnings generated. [ 22%] Linking CXX executable ../../bin/test_index_crosscompare_dna cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -o ../../bin/test_index_crosscompare_dna -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_crosscompare_dna make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_fm_rank_dictionary make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -c /<>/tests/index/test_index_fm_rank_dictionary.cpp [ 22%] Linking CXX executable ../../bin/test_index_fm_rank_dictionary cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_rank_dictionary.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -o ../../bin/test_index_fm_rank_dictionary -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_fm_rank_dictionary make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_shapes make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -c /<>/tests/index/test_index_shapes.cpp [ 22%] Linking CXX executable ../../bin/test_index_shapes cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_shapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -o ../../bin/test_index_shapes -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_shapes make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_char make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -c /<>/tests/index/test_index_crosscompare_char.cpp In file included from /<>/tests/index/test_index_crosscompare_char.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ In file included from /<>/tests/index/test_index_crosscompare_char.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ In file included from /<>/tests/index/test_index_crosscompare_char.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ In file included from /<>/tests/index/test_index_crosscompare_char.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ In file included from /<>/tests/index/test_index_crosscompare_char.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ In file included from /<>/tests/index/test_index_crosscompare_char.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ In file included from /<>/tests/index/test_index_crosscompare_char.cpp:39: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 25 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ In file included from /<>/tests/index/test_index_crosscompare_char.cpp:42: In file included from /<>/tests/index/test_crosscompare.h:40: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::Owner > >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::Owner > >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/tests/index/test_crosscompare.h:65:49: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator::Type iter1(index1); ^ /<>/tests/index/test_crosscompare.h:87:7: note: in instantiation of function template specialization 'seqan::crossBottomUp >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexWotd > >' requested here */ crossBottomUp< TopDown > > (index1, index2); ^ /<>/tests/index/test_crosscompare.h:129:9: note: in instantiation of function template specialization 'seqan::crossIndex, seqan::IndexWotd, seqan::StringSet >, seqan::Owner > > >' requested here crossIndex (t); ^ /<>/tests/index/test_crosscompare.h:196:5: note: in instantiation of function template specialization 'seqan::crossIndicesChar, seqan::IndexWotd >' requested here crossIndicesChar, IndexWotd<> >(); ^ /<>/tests/index/test_index_crosscompare_char.cpp:49:2: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_testIndexCrossCompareChar' requested here SEQAN_CALL_TEST(testIndexCrossCompareChar); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_testIndexCrossCompareChar ^ 38 warnings generated. [ 22%] Linking CXX executable ../../bin/test_index_finder cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_finder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -o ../../bin/test_index_finder -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_finder make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_dna_dfi make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 22%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -c /<>/tests/index/test_index_crosscompare_dna_dfi.cpp [ 23%] Linking CXX executable ../../bin/test_index_crosscompare_dna_dfi cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna_dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -o ../../bin/test_index_crosscompare_dna_dfi -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target test_index_crosscompare_dna_dfi make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_drawing make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object tests/index/CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -c /<>/tests/index/test_index_drawing.cpp In file included from /<>/tests/index/test_index_drawing.cpp:36: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/index_esa_drawing.h:67:15: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here TIterator it(stree); ^ /<>/tests/index/test_index_drawing.cpp:45:5: note: in instantiation of function template specialization 'seqan::writeRecords, seqan::String >, void>' requested here writeRecords(sstream, stree, seqan::DotDrawing()); ^ /<>/tests/index/test_index_drawing.cpp:80:2: note: in instantiation of function template specialization 'SEQAN_TEST_test_index_drawing_esa_dot' requested here SEQAN_CALL_TEST(test_index_drawing_esa_dot); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :50:1: note: expanded from here SEQAN_TEST_test_index_drawing_esa_dot ^ 1 warning generated. [ 23%] Linking CXX executable ../../bin/test_index_drawing cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_drawing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -o ../../bin/test_index_drawing -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target test_index_drawing make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_fm_sparse_string.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_fm_sparse_string make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object tests/index/CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o -c /<>/tests/index/test_index_fm_sparse_string.cpp 8 warnings generated. [ 23%] Linking CXX executable ../../bin/test_index_crosscompare_char cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -o ../../bin/test_index_crosscompare_char -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target test_index_crosscompare_char make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_fm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object tests/index/CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -c /<>/tests/index/test_index_fm.cpp [ 23%] Linking CXX executable ../../bin/test_index_fm_sparse_string cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_sparse_string.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o -o ../../bin/test_index_fm_sparse_string -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target test_index_fm_sparse_string make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_base.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/index/CMakeFiles/test_index_base.dir/test_index_base.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_base.dir/test_index_base.cpp.o -c /<>/tests/index/test_index_base.cpp In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm.h:469:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/tests/index/test_index_helpers.h:714:9: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here indexCreate(this->index); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest, seqan::Alloc >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel, seqan::Alloc >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm.h:469:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/tests/index/test_index_helpers.h:714:9: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here indexCreate(this->index); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest, seqan::Alloc >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel, seqan::Alloc >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm.h:469:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/tests/index/test_index_helpers.h:714:9: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here indexCreate(this->index); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest, seqan::Alloc >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel, seqan::Alloc >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm.h:469:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/tests/index/test_index_helpers.h:714:9: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, WTFMIndexConfig >' requested here indexCreate(this->index); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest, seqan::Alloc >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel, seqan::Alloc >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_helpers.h:714:9: note: in instantiation of function template specialization 'seqan::indexCreate >, void, WTFMIndexConfig >' requested here indexCreate(this->index); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_helpers.h:714:9: note: in instantiation of function template specialization 'seqan::indexCreate >, void, WTFMIndexConfig >' requested here indexCreate(this->index); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_helpers.h:714:9: note: in instantiation of function template specialization 'seqan::indexCreate >, void, WTFMIndexConfig >' requested here indexCreate(this->index); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::Owner > >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::Owner > >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::Owner > >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::Owner > >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::Owner > >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'FibreTest >, seqan::Owner > >, seqan::FMIndex > >, const seqan::Tag >::setUp' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :59:1: note: expanded from here LFTest__IsSentinel ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'LFTest__IsSentinel >, seqan::Owner > >, seqan::FMIndex > > >::LFTest__IsSentinel' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bifm.h:61:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); ^ /<>/tests/index/test_index_base.cpp:55:18: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here SEQAN_ASSERT(indexCreate(this->index)); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :53:1: note: expanded from here IndexTest__IndexCreate ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_fm.cpp:35: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > >::make' requested here /<>/tests/index/test_index_fm.cpp:155:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(LFTest, IsSentinel) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bifm.h:61:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); ^ /<>/tests/index/test_index_base.cpp:55:18: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here SEQAN_ASSERT(indexCreate(this->index)); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :53:1: note: expanded from here IndexTest__IndexCreate ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bifm.h:61:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); ^ /<>/tests/index/test_index_base.cpp:55:18: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here SEQAN_ASSERT(indexCreate(this->index)); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :53:1: note: expanded from here IndexTest__IndexCreate ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_bifm.h:61:12: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here return indexCreate(index.fwd, FibreSALF()) && indexCreate(index.rev, FibreSALF()); ^ /<>/tests/index/test_index_base.cpp:55:18: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here SEQAN_ASSERT(indexCreate(this->index)); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::runTest' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :53:1: note: expanded from here IndexTest__IndexCreate ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Alloc >, seqan::BidirectionalIndex > > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/holder_tristate.h:548:5: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here valueConstruct(ret, data); ^ /<>/include/seqan/basic/holder_tristate.h:650:21: note: in instantiation of function template specialization 'seqan::_holderAllocateObject, seqan::Packed > >, seqan::Tag >, seqan::String, seqan::Packed > > >' requested here me.data_value = _holderAllocateObject(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Packed > >, seqan::String, seqan::Packed > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) create(me); ^ /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Packed > >, seqan::FMIndex > > >::runTest' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :53:1: note: expanded from here IndexTest__IndexCreate ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Packed > >, seqan::FMIndex > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/holder_tristate.h:548:5: note: in instantiation of function template specialization 'seqan::valueConstruct, seqan::Packed > > *, const seqan::String, seqan::Packed > > &>' requested here valueConstruct(ret, data); ^ /<>/include/seqan/basic/holder_tristate.h:650:21: note: in instantiation of function template specialization 'seqan::_holderAllocateObject, seqan::Packed > >, seqan::Tag >, seqan::String, seqan::Packed > > >' requested here me.data_value = _holderAllocateObject(me, value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Packed > >, seqan::String, seqan::Packed > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) create(me); ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Packed > >, seqan::FMIndex > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Packed > >, seqan::FMIndex > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Packed > >, seqan::FMIndex > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'IndexTest__IndexCreate, seqan::Packed > >, seqan::FMIndex > > >::IndexTest__IndexCreate' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/index/test_index_base.cpp:35: In file included from /<>/tests/index/test_index_helpers.h:42: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > >::make' requested here /<>/tests/index/test_index_base.cpp:53:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::TagList, seqan::Alloc >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList, seqan::Packed > >, seqan::FMIndex > >, seqan::TagList >, seqan::FMIndex > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::FMIndex > >, seqan::TagList >, seqan::Owner > >, seqan::FMIndex > >, void> > > > > > > >::make' requested here SEQAN_TYPED_TEST(IndexTest, IndexCreate) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 19 warnings generated. [ 24%] Linking CXX executable ../../bin/test_index_fm cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -o ../../bin/test_index_fm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_index_fm make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_set /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_set /<>/obj-x86_64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake --color= Scanning dependencies of target test_journaled_set make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/journaled_set/CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/journaled_set && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -c /<>/tests/journaled_set/test_journaled_set.cpp In file included from /<>/tests/journaled_set/test_journaled_set.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_set/test_journaled_set.cpp:38: In file included from /<>/tests/journaled_set/test_journaled_set.h:42: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/journaled_set/test_journaled_set.cpp:38: In file included from /<>/tests/journaled_set/test_journaled_set.h:42: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/journaled_set/test_journaled_set.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 24%] Linking CXX executable ../../bin/test_journaled_set cd /<>/obj-x86_64-linux-gnu/tests/journaled_set && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_set.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -o ../../bin/test_journaled_set -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_journaled_set make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake --color= Scanning dependencies of target test_journaled_string_tree_find make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -c /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:43: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:43: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: note: in implicit copy constructor for 'seqan::String > >' first required here class DeltaMapEntry ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit move constructor for 'seqan::DeltaMapEntry' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct *, seqan::DeltaMapEntry >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct *, seqan::DeltaMapEntry >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault *, seqan::DeltaMapEntry *, seqan::DeltaMapEntry *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:5: note: in instantiation of function template specialization 'seqan::insert, seqan::Alloc > >, seqan::Tag, int, char, seqan::String > >, seqan::Tag >' requested here insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_mock.h:164:9: note: in instantiation of function template specialization 'seqan::insert, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag, int, char, std::vector >, seqan::Tag >' requested here insert(jst, 0, 'C', std::vector{1, 3, 5, 6, 7}, DeltaTypeSnp()); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:34: note: in instantiation of function template specialization 'JstMockGenerator::_createComplexJst, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag > >' requested here auto jst = JstMockGenerator::_createComplexJst(); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:9: note: in instantiation of function template specialization '_testFindJst, seqan::Alloc >, seqan::Tag, unsigned long>' requested here _testFindJst(p, length(needle(p)), length(needle(p))); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_journaled_string_tree_find_horspool' requested here SEQAN_CALL_TEST(test_journaled_string_tree_find_horspool); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :58:1: note: expanded from here SEQAN_TEST_test_journaled_string_tree_find_horspool ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: in instantiation of function template specialization 'seqan::impl::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Tag > > > &>, seqan::SelectValidProxy_>' requested here impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:282:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Tag > > > &>, seqan::SelectValidProxy_>' requested here init(traverser, observer, TProxySelector()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:306:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, TestHelperHitCollector_, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &, std::tuple, seqan::Alloc >, seqan::Tag > > > &> >' requested here find(traverser, algorithm, delegate, observer); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:5: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, TestHelperHitCollector_, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &>' requested here find(trav, ext, delegate); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:9: note: in instantiation of function template specialization '_testFindJst, seqan::Alloc >, seqan::Tag, unsigned long>' requested here _testFindJst(p, length(needle(p)), length(needle(p))); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_journaled_string_tree_find_horspool' requested here SEQAN_CALL_TEST(test_journaled_string_tree_find_horspool); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :58:1: note: expanded from here SEQAN_TEST_test_journaled_string_tree_find_horspool ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:282:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Tag > > > &>, seqan::SelectValidProxy_>' requested here init(traverser, observer, TProxySelector()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:306:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, TestHelperHitCollector_, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &, std::tuple, seqan::Alloc >, seqan::Tag > > > &> >' requested here find(traverser, algorithm, delegate, observer); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:5: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, TestHelperHitCollector_, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &>' requested here find(trav, ext, delegate); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:9: note: in instantiation of function template specialization '_testFindJst, seqan::Alloc >, seqan::Tag, unsigned long>' requested here _testFindJst(p, length(needle(p)), length(needle(p))); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_journaled_string_tree_find_horspool' requested here SEQAN_CALL_TEST(test_journaled_string_tree_find_horspool); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :58:1: note: expanded from here SEQAN_TEST_test_journaled_string_tree_find_horspool ^ 21 warnings generated. [ 24%] Linking CXX executable ../../bin/test_index_base cd /<>/obj-x86_64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_base.dir/test_index_base.cpp.o -o ../../bin/test_index_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_index_base make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/DependInfo.cmake --color= Scanning dependencies of target test_journaled_string_tree_traverser make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o -c /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:53:7: note: in implicit copy constructor for 'seqan::String > >' first required here class TraverserImpl; ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:101:20: note: in implicit copy constructor for 'seqan::TraverserImpl, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec >' first required here TTraverser travCopy(traverser); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_journaled_string_tree_traverser_constructor' requested here SEQAN_CALL_TEST(test_journaled_string_tree_traverser_constructor); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :79:1: note: expanded from here SEQAN_TEST_test_journaled_string_tree_traverser_constructor ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: in instantiation of function template specialization 'seqan::impl::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple<>, seqan::SelectValidProxy_>' requested here impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:417:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple<>, seqan::SelectValidProxy_>' requested here init(me, observer, SelectValidProxy()); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:181:9: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple<> >' requested here init(test, observer); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:47:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_journaled_string_tree_traverser_init' requested here SEQAN_CALL_TEST(test_journaled_string_tree_traverser_init); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :83:1: note: expanded from here SEQAN_TEST_test_journaled_string_tree_traverser_init ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: in instantiation of function template specialization 'seqan::impl::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple<>, seqan::SelectValidProxy_>' requested here impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:417:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple<>, seqan::SelectValidProxy_>' requested here init(me, observer, SelectValidProxy()); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:181:9: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple<> >' requested here init(test, observer); ^ /<>/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:47:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_journaled_string_tree_traverser_init' requested here SEQAN_CALL_TEST(test_journaled_string_tree_traverser_init); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :83:1: note: expanded from here SEQAN_TEST_test_journaled_string_tree_traverser_init ^ 7 warnings generated. [ 24%] Linking CXX executable ../../bin/test_journaled_string_tree_find cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -o ../../bin/test_journaled_string_tree_find -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_journaled_string_tree_find make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake --color= Scanning dependencies of target test_delta_map make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -c /<>/tests/journaled_string_tree/test_delta_map.cpp In file included from /<>/tests/journaled_string_tree/test_delta_map.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_delta_map.cpp:40: In file included from /<>/tests/journaled_string_tree/test_delta_store.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/journaled_string_tree/test_delta_map.cpp:40: In file included from /<>/tests/journaled_string_tree/test_delta_store.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/journaled_string_tree/test_delta_map.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 7 warnings generated. [ 24%] Linking CXX executable ../../bin/test_journaled_string_tree_traverser cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree_traverser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree_traverser.dir/test_journaled_string_tree_traverser.cpp.o -o ../../bin/test_journaled_string_tree_traverser -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_journaled_string_tree_traverser make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/DependInfo.cmake --color= Scanning dependencies of target test_journaled_string_tree make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -c /<>/tests/journaled_string_tree/test_journaled_string_tree.cpp In file included from /<>/tests/journaled_string_tree/test_delta_map.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: note: in implicit copy constructor for 'seqan::String > >' first required here class DeltaMapEntry ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit move constructor for 'seqan::DeltaMapEntry' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct *, seqan::DeltaMapEntry >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct *, seqan::DeltaMapEntry >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault *, seqan::DeltaMapEntry *, seqan::DeltaMapEntry *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/sequence_interface.h:1136:12: note: in instantiation of function template specialization 'seqan::reserve, seqan::Alloc, int, seqan::TagGenerous_>' requested here return reserve(std::forward(me), new_capacity, typename DefaultOverflowExplicit::Type()); ^ /<>/include/seqan/journaled_string_tree/delta_map.h:795:9: note: in instantiation of function template specialization 'seqan::reserve, seqan::Alloc > &, int>' requested here reserve(deltaMap._entries, 1); ^ /<>/tests/journaled_string_tree/test_delta_map.h:83:5: note: in instantiation of function template specialization 'seqan::insert, int, char [5], seqan::String > >, seqan::Tag >' requested here insert(map, 4, "ACGT", cov3, DeltaTypeIns()); ^ /<>/tests/journaled_string_tree/test_delta_map.h:99:5: note: in instantiation of function template specialization 'createMock >' requested here createMock(deltaMap); ^ /<>/tests/journaled_string_tree/test_delta_map.cpp:58:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_delta_map_insert' requested here SEQAN_CALL_TEST(test_delta_map_insert); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :117:1: note: expanded from here SEQAN_TEST_test_delta_map_insert ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: note: in implicit copy constructor for 'seqan::String > >' first required here class DeltaMapEntry ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit move constructor for 'seqan::DeltaMapEntry' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct *, seqan::DeltaMapEntry >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct *, seqan::DeltaMapEntry >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault *, seqan::DeltaMapEntry *, seqan::DeltaMapEntry *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1683:9: note: in instantiation of function template specialization 'seqan::arrayConstructMove >' requested here arrayConstructMove(old_array, old_array + seq_length, begin(seq, Standard())); ^ /<>/include/seqan/sequence/string_base.h:1697:5: note: in instantiation of function template specialization 'seqan::_reserveStorage, seqan::Alloc, unsigned long, seqan::TagExact_>' requested here _reserveStorage(seq, new_capacity, tag); ^ /<>/include/seqan/sequence/string_alloc.h:123:9: note: in instantiation of function template specialization 'seqan::reserve, seqan::Alloc, unsigned long, seqan::TagExact_>' requested here reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact()); ^ /<>/include/seqan/journaled_string_tree/delta_map.h:110:7: note: in instantiation of member function 'seqan::String, seqan::Alloc >::String' requested here class DeltaMap ^ /<>/tests/journaled_string_tree/test_journaled_string_tree.cpp:46:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_journaled_string_tree_host' requested here SEQAN_CALL_TEST(test_journaled_string_tree_host); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :40:1: note: expanded from here SEQAN_TEST_test_journaled_string_tree_host ^ 5 warnings generated. [ 24%] Linking CXX executable ../../bin/test_delta_map cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_delta_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -o ../../bin/test_delta_map -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_delta_map make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_observable make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -c /<>/tests/journaled_string_tree/test_basic_observable.cpp 5 warnings generated. [ 24%] Linking CXX executable ../../bin/test_journaled_string_tree cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -o ../../bin/test_journaled_string_tree -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_journaled_string_tree make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/map /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/map /<>/obj-x86_64-linux-gnu/tests/map/CMakeFiles/test_map.dir/DependInfo.cmake --color= Scanning dependencies of target test_map make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/map/CMakeFiles/test_map.dir/test_map.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/map && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_map.dir/test_map.cpp.o -c /<>/tests/map/test_map.cpp In file included from /<>/tests/journaled_string_tree/test_basic_observable.cpp:37: In file included from /<>/tests/journaled_string_tree/test_basic_observable.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:45: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/journaled_string_tree/test_basic_observable.cpp:37: In file included from /<>/tests/journaled_string_tree/test_basic_observable.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/journaled_string_tree/test_basic_observable.cpp:37: In file included from /<>/tests/journaled_string_tree/test_basic_observable.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/journaled_string_tree/test_basic_observable.cpp:37: In file included from /<>/tests/journaled_string_tree/test_basic_observable.h:41: In file included from /<>/include/seqan/journaled_string_tree.h:45: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 24%] Linking CXX executable ../../bin/test_basic_observable cd /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_observable.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -o ../../bin/test_basic_observable -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_basic_observable make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/misc /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/misc /<>/obj-x86_64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake --color= Scanning dependencies of target test_misc make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object tests/misc/CMakeFiles/test_misc.dir/test_misc.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/misc && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_misc.dir/test_misc.cpp.o -c /<>/tests/misc/test_misc.cpp In file included from /<>/tests/misc/test_misc.cpp:50: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1562:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1532:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, int, double>' requested here findIntervals(result, g, pm, act_knot, query_begin, query_end); ^ /<>/include/seqan/misc/interval_tree.h:1513:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, int, double>' requested here findIntervals(result, tree.g, tree.pm, query_begin, query_end); ^ /<>/tests/misc/test_misc_interval_tree.h:660:5: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(resultstmp, tmpT, 20, 30); ^ /<>/tests/misc/test_misc.cpp:108:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_Interval_Tree__IntervalTreeTest_QueryAtBoundary' requested here SEQAN_CALL_TEST(Interval_Tree__IntervalTreeTest_QueryAtBoundary); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :8:1: note: expanded from here SEQAN_TEST_Interval_Tree__IntervalTreeTest_QueryAtBoundary ^ In file included from /<>/tests/misc/test_misc.cpp:50: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1441:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1502:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, int, int>' requested here findIntervals(result, it.g, it.pm, query); ^ /<>/tests/misc/test_misc_interval_tree.h:460:9: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(result, itree, query); ^ /<>/tests/misc/test_misc_interval_tree.h:669:5: note: in instantiation of function template specialization 'seqan::IntervalTreeTest_IntervalTree' requested here IntervalTreeTest_IntervalTree(); ^ /<>/tests/misc/test_misc.cpp:109:5: note: in instantiation of function template specialization 'seqan::SEQAN_TEST_Interval_Tree__IntervalTreeTest_IntervalTree__int' requested here SEQAN_CALL_TEST(Interval_Tree__IntervalTreeTest_IntervalTree__int); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :10:1: note: expanded from here SEQAN_TEST_Interval_Tree__IntervalTreeTest_IntervalTree__int ^ [ 24%] Linking CXX executable ../../bin/test_map cd /<>/obj-x86_64-linux-gnu/tests/map && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_map.dir/test_map.cpp.o -o ../../bin/test_map -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_map make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/modifier /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/modifier /<>/obj-x86_64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake --color= Scanning dependencies of target test_modifier make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object tests/modifier/CMakeFiles/test_modifier.dir/test_modifier.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/modifier && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_modifier.dir/test_modifier.cpp.o -c /<>/tests/modifier/test_modifier.cpp In file included from /<>/tests/modifier/test_modifier.cpp:41: In file included from /<>/tests/modifier/test_modifier_view.h:41: /<>/tests/modifier/helpers.h:47:5: warning: definition of implicit copy assignment operator for 'CaesarChiffre' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] CaesarChiffre(CaesarChiffre &other) : _delta(other._delta) {} ^ /<>/include/seqan/modifier/modifier_view.h:124:27: note: in implicit copy assignment operator for 'CaesarChiffre' first required here cargo(*this).func = functor; ^ /<>/tests/modifier/test_modifier_view.h:108:27: note: in instantiation of member function 'seqan::ModifiedIterator > >::ModifiedIterator' requested here TModifiedIterator it(begin(myString, Standard()), myFunctor); ^ /<>/tests/modifier/test_modifier.cpp:94:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_modifier_view_iterator' requested here SEQAN_CALL_TEST(test_modifier_view_iterator); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :66:1: note: expanded from here SEQAN_TEST_test_modifier_view_iterator ^ 2 warnings generated. [ 25%] Linking CXX executable ../../bin/test_misc cd /<>/obj-x86_64-linux-gnu/tests/misc && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_misc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_misc.dir/test_misc.cpp.o -o ../../bin/test_misc -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target test_misc make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/modifier_cyclic_shape /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/modifier_cyclic_shape /<>/obj-x86_64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake --color= Scanning dependencies of target test_modifier_cyclic_shape make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/modifier_cyclic_shape && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -c /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp In file included from /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: In file included from /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: /<>/include/seqan/modifier/cyclic_shape.h:203:5: warning: definition of implicit copy assignment operator for 'CyclicShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] CyclicShape(CyclicShape const & other) : ^ /<>/include/seqan/modifier/modifier_string.h:452:15: note: in implicit copy assignment operator for 'seqan::CyclicShape' first required here cargo(me) = cargo(_origin); ^ /<>/include/seqan/modifier/modifier_string.h:458:5: note: in instantiation of function template specialization 'seqan::_copyCargoImpl > >, seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here _copyCargoImpl(me, _origin, typename IsSameType< ^ /<>/include/seqan/modifier/modifier_cyclic_shape.h:386:5: note: in instantiation of function template specialization 'seqan::_copyCargo > >, seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here _copyCargo(tmp, me); ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:16: note: in instantiation of function template specialization 'seqan::begin >, seqan::GappedShape >, seqan::Standard_>' requested here TIter it = begin(modStr, Standard()); ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:175:20: note: in instantiation of function template specialization 'test_iterator >, seqan::GappedShape > >' requested here CharString s = test_iterator(STRING1, shape); ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_alloc_charstring' requested here SEQAN_CALL_TEST(test_modifier_cyclic_shape_iterator_generic_alloc_charstring); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :12:1: note: expanded from here SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_alloc_charstring ^ In file included from /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: In file included from /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: /<>/include/seqan/modifier/cyclic_shape.h:288:5: warning: definition of implicit copy assignment operator for 'CyclicShape >, 1> >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] CyclicShape(CyclicShape const &) ^ /<>/include/seqan/modifier/modifier_string.h:452:15: note: in implicit copy assignment operator for 'seqan::CyclicShape >, 1> >' first required here cargo(me) = cargo(_origin); ^ /<>/include/seqan/modifier/modifier_string.h:458:5: note: in instantiation of function template specialization 'seqan::_copyCargoImpl >, 1> > > >, seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > > >' requested here _copyCargoImpl(me, _origin, typename IsSameType< ^ /<>/include/seqan/modifier/modifier_cyclic_shape.h:386:5: note: in instantiation of function template specialization 'seqan::_copyCargo >, 1> > > >, seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > > >' requested here _copyCargo(tmp, me); ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:16: note: in instantiation of function template specialization 'seqan::begin >, seqan::FixedShape<2, seqan::GappedShape >, 1>, seqan::Standard_>' requested here TIter it = begin(modStr, Standard()); ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:208:20: note: in instantiation of function template specialization 'test_iterator >, seqan::FixedShape<2, seqan::GappedShape >, 1> >' requested here CharString s = test_iterator(STRING1, shape); ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:49:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_modifier_cyclic_shape_iterator_fixed_alloc_charstring' requested here SEQAN_CALL_TEST(test_modifier_cyclic_shape_iterator_fixed_alloc_charstring); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :18:1: note: expanded from here SEQAN_TEST_test_modifier_cyclic_shape_iterator_fixed_alloc_charstring ^ In file included from /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: In file included from /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: /<>/include/seqan/modifier/cyclic_shape.h:288:5: warning: definition of implicit copy assignment operator for 'CyclicShape >, 0> >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] CyclicShape(CyclicShape const &) ^ /<>/include/seqan/modifier/modifier_string.h:100:7: note: in implicit copy assignment operator for 'seqan::CyclicShape >, 0> >' first required here class ModifiedString ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:79:9: note: in implicit copy assignment operator for 'seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >' first required here mod = mod2; ^ /<>/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct' requested here SEQAN_CALL_TEST(test_modifier_cyclic_shape_modified_string_construct); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :24:1: note: expanded from here SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct ^ 3 warnings generated. [ 25%] Linking CXX executable ../../bin/test_modifier_cyclic_shape cd /<>/obj-x86_64-linux-gnu/tests/modifier_cyclic_shape && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier_cyclic_shape.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -o ../../bin/test_modifier_cyclic_shape -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target test_modifier_cyclic_shape make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/multiple_translation_units /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/multiple_translation_units /<>/obj-x86_64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake --color= Scanning dependencies of target test_multiple_translation_units make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/multiple_translation_units && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o -c /<>/tests/multiple_translation_units/test_multiple_translation_units.cpp 1 warning generated. [ 25%] Linking CXX executable ../../bin/test_modifier cd /<>/obj-x86_64-linux-gnu/tests/modifier && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_modifier.dir/test_modifier.cpp.o -o ../../bin/test_modifier -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target test_modifier make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/parallel /<>/obj-x86_64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake --color= Scanning dependencies of target test_parallel make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object tests/parallel/CMakeFiles/test_parallel.dir/test_parallel.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_parallel.dir/test_parallel.cpp.o -c /<>/tests/parallel/test_parallel.cpp In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units.cpp:35: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units.cpp:35: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units.cpp:35: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units.cpp:35: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 25%] Building CXX object tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/multiple_translation_units && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o -c /<>/tests/multiple_translation_units/test_multiple_translation_units_2.cpp [ 25%] Linking CXX executable ../../bin/test_parallel cd /<>/obj-x86_64-linux-gnu/tests/parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parallel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parallel.dir/test_parallel.cpp.o -o ../../bin/test_parallel -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target test_parallel make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/parse_lm /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/parse_lm /<>/obj-x86_64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake --color= Scanning dependencies of target test_parse_lm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object tests/parse_lm/CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/parse_lm && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -c /<>/tests/parse_lm/test_parse_lm.cpp In file included from /<>/tests/parse_lm/test_parse_lm.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/parse_lm/test_parse_lm.cpp:38: In file included from /<>/tests/parse_lm/test_parse_lm.h:40: In file included from /<>/include/seqan/parse_lm.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/parse_lm/test_parse_lm.cpp:38: In file included from /<>/tests/parse_lm/test_parse_lm.h:40: In file included from /<>/include/seqan/parse_lm.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/parse_lm/test_parse_lm.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 25%] Linking CXX executable ../../bin/test_multiple_translation_units cd /<>/obj-x86_64-linux-gnu/tests/multiple_translation_units && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multiple_translation_units.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units_2.cpp.o -o ../../bin/test_multiple_translation_units -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target test_multiple_translation_units make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/pipe /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/pipe /<>/obj-x86_64-linux-gnu/tests/pipe/CMakeFiles/test_pipe.dir/DependInfo.cmake --color= Scanning dependencies of target test_pipe make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object tests/pipe/CMakeFiles/test_pipe.dir/test_pipe.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/pipe && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_pipe.dir/test_pipe.cpp.o -c /<>/tests/pipe/test_pipe.cpp 4 warnings generated. [ 25%] Linking CXX executable ../../bin/test_parse_lm cd /<>/obj-x86_64-linux-gnu/tests/parse_lm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parse_lm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -o ../../bin/test_parse_lm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target test_parse_lm make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/platform /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/platform /<>/obj-x86_64-linux-gnu/tests/platform/CMakeFiles/test_platform.dir/DependInfo.cmake --color= Scanning dependencies of target test_platform make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/platform/CMakeFiles/test_platform.dir/test_platform.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/platform && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_platform.dir/test_platform.cpp.o -c /<>/tests/platform/test_platform.cpp [ 26%] Linking CXX executable ../../bin/test_platform cd /<>/obj-x86_64-linux-gnu/tests/platform && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_platform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_platform.dir/test_platform.cpp.o -o ../../bin/test_platform -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target test_platform make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/random /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/random /<>/obj-x86_64-linux-gnu/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake --color= Scanning dependencies of target test_random make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/random/CMakeFiles/test_random.dir/test_random.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/random && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_random.dir/test_random.cpp.o -c /<>/tests/random/test_random.cpp [ 26%] Linking CXX executable ../../bin/test_random cd /<>/obj-x86_64-linux-gnu/tests/random && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_random.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_random.dir/test_random.cpp.o -o ../../bin/test_random -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target test_random make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/realign /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/realign /<>/obj-x86_64-linux-gnu/tests/realign/CMakeFiles/test_realign.dir/DependInfo.cmake --color= Scanning dependencies of target test_realign make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/realign/CMakeFiles/test_realign.dir/test_realign.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/realign && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_realign.dir/test_realign.cpp.o -c /<>/tests/realign/test_realign.cpp In file included from /<>/tests/realign/test_realign.cpp:38: In file included from /<>/include/seqan/realign.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/realign/test_realign.cpp:38: In file included from /<>/include/seqan/realign.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/realign/test_realign.cpp:38: In file included from /<>/include/seqan/realign.h:47: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/realign/test_realign.cpp:38: In file included from /<>/include/seqan/realign.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 26%] Linking CXX executable ../../bin/test_pipe cd /<>/obj-x86_64-linux-gnu/tests/pipe && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_pipe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_pipe.dir/test_pipe.cpp.o -o ../../bin/test_pipe -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target test_pipe make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/reduced_aminoacid /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/reduced_aminoacid /<>/obj-x86_64-linux-gnu/tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/DependInfo.cmake --color= Scanning dependencies of target test_reduced_aminoacid make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/reduced_aminoacid && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o -c /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp In file included from /<>/tests/realign/test_realign.cpp:38: In file included from /<>/include/seqan/realign.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/tests/realign/test_realign.cpp:81:5: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, /*contigID=*/0, 1, 10, false, 0, 0, DEBUG_REALIGNMENT); ^ /<>/tests/realign/test_realign.cpp:653:2: note: in instantiation of function template specialization 'SEQAN_TEST_test_realign_one_read_no_gaps' requested here SEQAN_CALL_TEST(test_realign_one_read_no_gaps); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :77:1: note: expanded from here SEQAN_TEST_test_realign_one_read_no_gaps ^ In file included from /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::FMIndex, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); // instantiate ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex' requested here SEQAN_CALL_TEST(test_reduced_aminoacid_murphy10_modview_fmindex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :116:1: note: expanded from here SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex ^ In file included from /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::FMIndex, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); // instantiate ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex' requested here SEQAN_CALL_TEST(test_reduced_aminoacid_murphy10_modview_fmindex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :116:1: note: expanded from here SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex ^ In file included from /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple > >, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::FMIndex, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); // instantiate ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex' requested here SEQAN_CALL_TEST(test_reduced_aminoacid_murphy10_modview_fmindex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :116:1: note: expanded from here SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex ^ In file included from /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::FMIndex, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); // instantiate ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex' requested here SEQAN_CALL_TEST(test_reduced_aminoacid_murphy10_modview_fmindex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :116:1: note: expanded from here SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex ^ In file included from /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::FMIndex, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); // instantiate ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex' requested here SEQAN_CALL_TEST(test_reduced_aminoacid_murphy10_modview_fmindex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :116:1: note: expanded from here SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex ^ In file included from /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::FMIndex, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); // instantiate ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex' requested here SEQAN_CALL_TEST(test_reduced_aminoacid_murphy10_modview_fmindex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :116:1: note: expanded from here SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex ^ In file included from /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::External >, 4194304, 2> > >, seqan::StringSet, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, seqan::FMIndex, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); // instantiate ^ /<>/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex' requested here SEQAN_CALL_TEST(test_reduced_aminoacid_murphy10_modview_fmindex); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :116:1: note: expanded from here SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex ^ 5 warnings generated. [ 26%] Linking CXX executable ../../bin/test_realign cd /<>/obj-x86_64-linux-gnu/tests/realign && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_realign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_realign.dir/test_realign.cpp.o -o ../../bin/test_realign -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target test_realign make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/rna_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/rna_io /<>/obj-x86_64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_rna_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/rna_io/CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/rna_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -c /<>/tests/rna_io/test_rna_io.cpp In file included from /<>/tests/rna_io/test_rna_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Connect_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/rna_io/test_rna_io.h:55:28: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); ^ /<>/tests/rna_io/test_rna_io.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_connect' requested here SEQAN_CALL_TEST(test_rna_io_read_connect); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_rna_io_read_connect ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Stockholm_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/rna_io/test_rna_io.h:55:28: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); ^ /<>/tests/rna_io/test_rna_io.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_connect' requested here SEQAN_CALL_TEST(test_rna_io_read_connect); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_rna_io_read_connect ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::DotBracket_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/rna_io/test_rna_io.h:55:28: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); ^ /<>/tests/rna_io/test_rna_io.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_connect' requested here SEQAN_CALL_TEST(test_rna_io_read_connect); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_rna_io_read_connect ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Vienna_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/rna_io/test_rna_io.h:55:28: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); ^ /<>/tests/rna_io/test_rna_io.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_connect' requested here SEQAN_CALL_TEST(test_rna_io_read_connect); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_rna_io_read_connect ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Ebpseq_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/rna_io/test_rna_io.h:55:28: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); ^ /<>/tests/rna_io/test_rna_io.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_connect' requested here SEQAN_CALL_TEST(test_rna_io_read_connect); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_rna_io_read_connect ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:40: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bpseq_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/rna_io/test_rna_io.h:55:28: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::RnaStructFileIn inputfile(seqan::toCString(rnaPath), seqan::OPEN_RDONLY); ^ /<>/tests/rna_io/test_rna_io.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_connect' requested here SEQAN_CALL_TEST(test_rna_io_read_connect); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_rna_io_read_connect ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/rna_io/connect_read_write.h:143:9: note: in instantiation of function template specialization 'seqan::startsWith, char [7]>' requested here if (startsWith(buffer, "ENERGY")) ^ /<>/include/seqan/rna_io/connect_read_write.h:234:5: note: in instantiation of function template specialization 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >' requested here readRecord(record, iter, Connect()); ^ /<>/include/seqan/rna_io/rna_struct_file.h:192:9: note: in instantiation of function template specialization 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >' requested here readRecord(record, context, iter, TFormat()); ^ /<>/include/seqan/rna_io/rna_struct_file.h:201:5: note: in instantiation of function template specialization 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(record, context(file), file.iter, file.format); ^ /<>/tests/rna_io/test_rna_io.h:57:5: note: in instantiation of function template specialization 'seqan::readRecord' requested here readRecord(rnaRecord, inputfile); ^ /<>/tests/rna_io/test_rna_io.cpp:44:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_connect' requested here SEQAN_CALL_TEST(test_rna_io_read_connect); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_rna_io_read_connect ^ In file included from /<>/tests/rna_io/test_rna_io.cpp:38: In file included from /<>/tests/rna_io/test_rna_io.h:42: In file included from /<>/include/seqan/rna_io.h:48: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/include/seqan/rna_io/rna_record.h:119:7: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here class RnaRecord ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_construct.h:75:38: note: in implicit move constructor for 'seqan::RnaRecord' first required here { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_uninitialized.h:83:8: note: in instantiation of function template specialization 'std::_Construct' requested here std::_Construct(std::__addressof(*__cur), *__first); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_uninitialized.h:140:2: note: in instantiation of function template specialization 'std::__uninitialized_copy::__uninit_copy, seqan::RnaRecord *>' requested here __uninit_copy(__first, __last, __result); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_uninitialized.h:307:19: note: in instantiation of function template specialization 'std::uninitialized_copy, seqan::RnaRecord *>' requested here { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_uninitialized.h:315:19: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return std::__uninitialized_copy_a(_GLIBCXX_MAKE_MOVE_ITERATOR(__first), ^ /<>/include/seqan/sequence/adapt_stl_container.h:910:5: note: in instantiation of function template specialization 'seqan::insert > &, unsigned long, seqan::RnaRecord>' requested here insert(std::forward(me), length(me), source); ^ /<>/include/seqan/sequence/sequence_interface.h:903:5: note: in instantiation of function template specialization 'seqan::append > &, seqan::RnaRecord, seqan::TagGenerous_>' requested here append(target, source, typename DefaultOverflowImplicit::Type()); ^ /<>/include/seqan/rna_io/rna_struct_file.h:315:9: note: in instantiation of function template specialization 'seqan::append > &, seqan::RnaRecord>' requested here append(contents.records, record); ^ /<>/tests/rna_io/test_rna_io.h:355:12: note: in instantiation of function template specialization 'seqan::readRecords' requested here seqan::readRecords(contents, inputfile, 100u); ^ /<>/tests/rna_io/test_rna_io.cpp:49:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_rna_io_read_ebpseq' requested here SEQAN_CALL_TEST(test_rna_io_read_ebpseq); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :128:1: note: expanded from here SEQAN_TEST_test_rna_io_read_ebpseq ^ 7 warnings generated. [ 26%] Linking CXX executable ../../bin/test_reduced_aminoacid cd /<>/obj-x86_64-linux-gnu/tests/reduced_aminoacid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_reduced_aminoacid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o -o ../../bin/test_reduced_aminoacid -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target test_reduced_aminoacid make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/roi_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/roi_io /<>/obj-x86_64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_roi_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/roi_io/CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/roi_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -c /<>/tests/roi_io/test_roi_io.cpp In file included from /<>/tests/roi_io/test_roi_io.cpp:38: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/roi_io/test_roi_io.cpp:38: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/roi_io/test_roi_io.cpp:38: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/roi_io/test_roi_io.cpp:38: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/roi_io/test_roi_io.cpp:38: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Roi_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/roi_io/test_roi_io.cpp:95:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::RoiFileIn roiFileIn(toCString(inPath)); ^ /<>/tests/roi_io/test_roi_io.cpp:215:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_roi_roi_file_read' requested here SEQAN_CALL_TEST(test_roi_roi_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :34:1: note: expanded from here SEQAN_TEST_test_roi_roi_file_read ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 5 warnings generated. [ 26%] Linking CXX executable ../../bin/test_roi_io cd /<>/obj-x86_64-linux-gnu/tests/roi_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_roi_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -o ../../bin/test_roi_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target test_roi_io make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/score /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/score /<>/obj-x86_64-linux-gnu/tests/score/CMakeFiles/test_score.dir/DependInfo.cmake --color= Scanning dependencies of target test_score make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/score/CMakeFiles/test_score.dir/test_score.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/score && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_score.dir/test_score.cpp.o -c /<>/tests/score/test_score.cpp In file included from /<>/tests/score/test_score.cpp:50: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/score/score_matrix_io.h:179:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(fin, toCString(filename))) ^ /<>/include/seqan/score/score_matrix.h:119:9: note: in instantiation of function template specialization 'seqan::loadScoreMatrix, seqan::Tag >' requested here loadScoreMatrix(*this, filename); ^ /<>/tests/score/test_score.cpp:205:22: note: in instantiation of member function 'seqan::Score, seqan::Tag > >::Score' requested here const TScore matrixScore(toCString(pathToBlosum62)); ^ /<>/tests/score/test_score.cpp:686:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_score_matrix' requested here SEQAN_CALL_TEST(test_score_matrix); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :96:1: note: expanded from here SEQAN_TEST_test_score_matrix ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/score/test_score.cpp:50: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/score/score_matrix_io.h:179:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(fin, toCString(filename))) ^ /<>/include/seqan/score/score_matrix.h:119:9: note: in instantiation of function template specialization 'seqan::loadScoreMatrix, seqan::Tag >' requested here loadScoreMatrix(*this, filename); ^ /<>/tests/score/test_score.cpp:205:22: note: in instantiation of member function 'seqan::Score, seqan::Tag > >::Score' requested here const TScore matrixScore(toCString(pathToBlosum62)); ^ /<>/tests/score/test_score.cpp:686:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_score_matrix' requested here SEQAN_CALL_TEST(test_score_matrix); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :96:1: note: expanded from here SEQAN_TEST_test_score_matrix ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 12 warnings generated. [ 26%] Linking CXX executable ../../bin/test_rna_io cd /<>/obj-x86_64-linux-gnu/tests/rna_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_rna_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -o ../../bin/test_rna_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target test_rna_io make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_combination.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_combination make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object tests/seeds/CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -c /<>/tests/seeds/test_seeds_combination.cpp 2 warnings generated. [ 27%] Linking CXX executable ../../bin/test_score cd /<>/obj-x86_64-linux-gnu/tests/score && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_score.dir/test_score.cpp.o -o ../../bin/test_score -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target test_score make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_extension.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_extension make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tests/seeds/CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o -c /<>/tests/seeds/test_seeds_extension.cpp [ 27%] Linking CXX executable ../../bin/test_seeds_combination cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_combination.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -o ../../bin/test_seeds_combination -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target test_seeds_combination make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_seed_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o -c /<>/tests/seeds/test_seeds_seed_base.cpp In file included from /<>/tests/seeds/test_seeds_extension.cpp:38: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/seeds/seeds_extension.h:809:42: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here TDatabasePrefix databasePrefix = prefix(database, beginPositionH(seed)); ^ /<>/tests/seeds/test_seeds_extension.cpp:210:9: note: in instantiation of function template specialization 'seqan::extendSeed, seqan::Alloc >, seqan::String, seqan::Alloc >, int, seqan::Tag >' requested here extendSeed(seed, database, query, EXTEND_BOTH, scoringScheme, 1, GappedXDrop()); ^ /<>/tests/seeds/test_seeds_extension.cpp:475:5: note: in instantiation of function template specialization 'testSeedsExtensionGappedXDropExtension >' requested here testSeedsExtensionGappedXDropExtension(Simple()); ^ /<>/tests/seeds/test_seeds_extension.cpp:504:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_seeds_extension_gapped_xdrop_extension_simple' requested here SEQAN_CALL_TEST(test_seeds_extension_gapped_xdrop_extension_simple); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :20:1: note: expanded from here SEQAN_TEST_test_seeds_extension_gapped_xdrop_extension_simple ^ In file included from /<>/tests/seeds/test_seeds_extension.cpp:38: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/seeds/seeds_extension.h:809:42: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here TDatabasePrefix databasePrefix = prefix(database, beginPositionH(seed)); ^ /<>/tests/seeds/test_seeds_extension.cpp:363:9: note: in instantiation of function template specialization 'seqan::extendSeed, seqan::Alloc >, seqan::String, seqan::Alloc >, int, seqan::ScoreMatrix, seqan::Blosum62_> >' requested here extendSeed(seed, database, query, EXTEND_BOTH, scoringScheme2, 1, GappedXDrop()); ^ /<>/tests/seeds/test_seeds_extension.cpp:475:5: note: in instantiation of function template specialization 'testSeedsExtensionGappedXDropExtension >' requested here testSeedsExtensionGappedXDropExtension(Simple()); ^ /<>/tests/seeds/test_seeds_extension.cpp:504:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_seeds_extension_gapped_xdrop_extension_simple' requested here SEQAN_CALL_TEST(test_seeds_extension_gapped_xdrop_extension_simple); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :20:1: note: expanded from here SEQAN_TEST_test_seeds_extension_gapped_xdrop_extension_simple ^ [ 27%] Linking CXX executable ../../bin/test_seeds_seed_base cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o -o ../../bin/test_seeds_seed_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target test_seeds_seed_base make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_global_chaining make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 27%] Building CXX object tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -c /<>/tests/seeds/test_seeds_global_chaining.cpp 2 warnings generated. [ 27%] Linking CXX executable ../../bin/test_seeds_extension cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_extension.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o -o ../../bin/test_seeds_extension -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target test_seeds_extension make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_seed_chained make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -c /<>/tests/seeds/test_seeds_seed_chained.cpp In file included from /<>/tests/seeds/test_seeds_global_chaining.cpp:37: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap *, long, seqan::Triple, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop *, long, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4867:12: note: in instantiation of function template specialization 'std::__sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ^ /<>/include/seqan/seeds/seeds_global_chaining.h:170:10: note: in instantiation of function template specialization 'std::sort *>' requested here std::sort(begin(intervalPoints, Standard()), end(intervalPoints, Standard())); ^ /<>/tests/seeds/test_seeds_global_chaining.cpp:58:9: note: in instantiation of function template specialization 'seqan::chainSeedsGlobally, seqan::DefaultSeedConfig>, seqan::Alloc >, seqan::Seed, seqan::DefaultSeedConfig>, seqan::Tag >' requested here chainSeedsGlobally(result, seedSet, SparseChaining()); ^ /<>/tests/seeds/test_seeds_global_chaining.cpp:150:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_seeds_global_chaining_sparse_length' requested here SEQAN_CALL_TEST(test_seeds_global_chaining_sparse_length); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :16:1: note: expanded from here SEQAN_TEST_test_seeds_global_chaining_sparse_length ^ [ 28%] Linking CXX executable ../../bin/test_seeds_seed_chained cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_chained.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -o ../../bin/test_seeds_seed_chained -lrt -lz -lbz2 1 warning generated. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_seed_chained make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend [ 28%] Linking CXX executable ../../bin/test_seeds_global_chaining cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_global_chaining.dir/link.txt --verbose=1 make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -o ../../bin/test_seeds_global_chaining -lrt -lz -lbz2 Scanning dependencies of target test_seeds_seed_diagonal make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -c /<>/tests/seeds/test_seeds_seed_diagonal.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_global_chaining make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_seed_set_unordered make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -c /<>/tests/seeds/test_seeds_seed_set_unordered.cpp [ 28%] Linking CXX executable ../../bin/test_seeds_seed_diagonal cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_diagonal.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -o ../../bin/test_seeds_seed_diagonal -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_seed_diagonal make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_seed_set_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o -c /<>/tests/seeds/test_seeds_seed_set_base.cpp [ 28%] Linking CXX executable ../../bin/test_seeds_seed_set_unordered cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_set_unordered.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -o ../../bin/test_seeds_seed_set_unordered -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_seed_set_unordered make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_align_banded_chain_impl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -c /<>/tests/seeds/test_align_banded_chain_impl.cpp [ 28%] Linking CXX executable ../../bin/test_seeds_seed_set_base cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_set_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o -o ../../bin/test_seeds_seed_set_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_seed_set_base make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake --color= Scanning dependencies of target test_seeds_banded_chain_alignment_interface make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -c /<>/tests/seeds/test_banded_chain_alignment_interface.cpp [ 28%] Linking CXX executable ../../bin/test_seeds_align_banded_chain_impl cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_align_banded_chain_impl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -o ../../bin/test_seeds_align_banded_chain_impl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_align_banded_chain_impl make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seq_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seq_io /<>/obj-x86_64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_seq_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/seq_io/CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/seq_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -c /<>/tests/seq_io/test_seq_io.cpp In file included from /<>/tests/seq_io/test_seq_io.cpp:36: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/seq_io/test_seq_io.cpp:36: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/seq_io/test_seq_io.cpp:36: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/seq_io/test_seq_io.cpp:36: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/seq_io/test_seq_io.cpp:36: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/seq_io/test_read_bam.h:53:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::SeqFileIn seqFileIn(toCString(filePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/seq_io/test_seq_io.cpp:36: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/tests/seq_io/test_read_bam.h:61:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(back(metas), back(seqs), seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/seq_io/test_seq_io.cpp:36: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/tests/seq_io/test_fai_index.h:92:21: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, int>' requested here SEQAN_ASSERT_EQ(prefix(str, 20), "TTGCCCACTCCCTCTCTGCG"); ^ /<>/tests/seq_io/test_seq_io.cpp:98:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_seq_io_genomic_fai_index_read_sequence' requested here SEQAN_CALL_TEST(test_seq_io_genomic_fai_index_read_sequence); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :9:1: note: expanded from here SEQAN_TEST_test_seq_io_genomic_fai_index_read_sequence ^ 7 warnings generated. [ 28%] Linking CXX executable ../../bin/test_seq_io cd /<>/obj-x86_64-linux-gnu/tests/seq_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seq_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -o ../../bin/test_seq_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seq_io make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence /<>/obj-x86_64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake --color= Scanning dependencies of target test_stringset_v2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/sequence/CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -c /<>/tests/sequence/test_stringset_v2.cpp In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/sequence/string_base.h:1342:26: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value ^ /<>/include/seqan/sequence/string_base.h:1366:42: note: in instantiation of function template specialization 'seqan::AppendValueToString_ >::appendValue_, seqan::Packed > >, seqan::Alloc >, const seqan::String, seqan::Packed > > &>' requested here AppendValueToString_ >::appendValue_(me, std::forward(_value)); ^ /<>/include/seqan/sequence/string_set_owner.h:174:5: note: in instantiation of function template specialization 'seqan::appendValue, seqan::Packed > >, seqan::Alloc, const seqan::String, seqan::Packed > > &, seqan::TagGenerous_>' requested here appendValue(me.strings, obj, tag); ^ /<>/include/seqan/sequence/sequence_interface.h:937:5: note: in instantiation of function template specialization 'seqan::appendValue, seqan::Packed > >, seqan::String, seqan::Packed > >, seqan::TagGenerous_>' requested here appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); ^ /<>/tests/sequence/test_string_set.h:332:5: note: in instantiation of function template specialization 'seqan::appendValue, seqan::Packed > >, seqan::Owner > > &, seqan::String, seqan::Packed > > &>' requested here appendValue(stringSet1, str1); ^ /<>/tests/sequence/test_string_set.h:371:5: note: in instantiation of function template specialization 'testStringSetCopyConstructible, seqan::Packed > >, seqan::Owner > > >' requested here testStringSetCopyConstructible(strSet); ^ /<>/tests/sequence/test_string_set.h:366:1: note: in instantiation of member function 'StringSetTestCommon__CopyConstructible, seqan::Packed > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, CopyConstructible) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :42:1: note: expanded from here StringSetTestCommon__CopyConstructible ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__CopyConstructible, seqan::Packed > >, seqan::Owner > > >::StringSetTestCommon__CopyConstructible' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/sequence/test_string_set.h:366:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, CopyConstructible) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/sequence/string_base.h:1342:26: note: in implicit copy constructor for 'seqan::String > >' first required here TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value ^ /<>/include/seqan/sequence/string_base.h:1366:42: note: in instantiation of function template specialization 'seqan::AppendValueToString_ >::appendValue_ > >, seqan::Alloc >, const seqan::String > > &>' requested here AppendValueToString_ >::appendValue_(me, std::forward(_value)); ^ /<>/include/seqan/sequence/string_set_owner.h:174:5: note: in instantiation of function template specialization 'seqan::appendValue > >, seqan::Alloc, const seqan::String > > &, seqan::TagGenerous_>' requested here appendValue(me.strings, obj, tag); ^ /<>/include/seqan/sequence/sequence_interface.h:937:5: note: in instantiation of function template specialization 'seqan::appendValue > >, seqan::String > >, seqan::TagGenerous_>' requested here appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); ^ /<>/tests/sequence/test_string_set.h:332:5: note: in instantiation of function template specialization 'seqan::appendValue > >, seqan::Owner > > &, seqan::String > > &>' requested here appendValue(stringSet1, str1); ^ /<>/tests/sequence/test_string_set.h:371:5: note: in instantiation of function template specialization 'testStringSetCopyConstructible > >, seqan::Owner > > >' requested here testStringSetCopyConstructible(strSet); ^ /<>/tests/sequence/test_string_set.h:366:1: note: in instantiation of member function 'StringSetTestCommon__CopyConstructible > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, CopyConstructible) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :42:1: note: expanded from here StringSetTestCommon__CopyConstructible ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__CopyConstructible > >, seqan::Owner > > >::StringSetTestCommon__CopyConstructible' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/sequence/test_string_set.h:366:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, CopyConstructible) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/sequence/string_base.h:1342:26: note: in implicit copy constructor for 'seqan::String > >' first required here TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value ^ /<>/include/seqan/sequence/string_base.h:1366:42: note: in instantiation of function template specialization 'seqan::AppendValueToString_ >::appendValue_ > >, seqan::Alloc >, const seqan::String > > &>' requested here AppendValueToString_ >::appendValue_(me, std::forward(_value)); ^ /<>/include/seqan/sequence/string_set_owner.h:174:5: note: in instantiation of function template specialization 'seqan::appendValue > >, seqan::Alloc, const seqan::String > > &, seqan::TagGenerous_>' requested here appendValue(me.strings, obj, tag); ^ /<>/include/seqan/sequence/sequence_interface.h:937:5: note: in instantiation of function template specialization 'seqan::appendValue > >, seqan::String > >, seqan::TagGenerous_>' requested here appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); ^ /<>/tests/sequence/test_string_set.h:332:5: note: in instantiation of function template specialization 'seqan::appendValue > >, seqan::Owner > > &, seqan::String > > &>' requested here appendValue(stringSet1, str1); ^ /<>/tests/sequence/test_string_set.h:371:5: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) testStringSetCopyConstructible(strSet); ^ /<>/tests/sequence/test_string_set.h:366:1: note: in instantiation of member function 'StringSetTestCommon__CopyConstructible > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, CopyConstructible) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :42:1: note: expanded from here StringSetTestCommon__CopyConstructible ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__CopyConstructible > >, seqan::Owner > > >::StringSetTestCommon__CopyConstructible' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:366:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, CopyConstructible) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Packed > >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Packed > >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Packed > >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Packed > >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Packed > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment > >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix > >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix > >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Array<100> >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Array<100> >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Array<100> >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<100> >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<100> >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Array<100> >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Array<100> >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Array<100> >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<100> >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<100> >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Array<1000> >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Array<1000> >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Array<1000> >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<1000> >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<1000> >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Array<1000> >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Array<1000> >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Array<1000> >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<1000> >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Array<1000> >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 4 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Alloc >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Alloc >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 9 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 9 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Alloc >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 10 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix, seqan::Alloc >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix, seqan::Alloc >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 10 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 11 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 11 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2096:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(strSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, void> >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::Owner > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2050:23: note: in implicit copy constructor for 'seqan::Segment >, seqan::Owner > >, seqan::PrefixSegment>' first required here TSetPrefix pref = prefix(set, 3); ^ /<>/tests/sequence/test_string_set.h:2099:5: note: in instantiation of function template specialization 'testStringSetPrefix >, seqan::Owner > > >' requested here testStringSetPrefix(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :26:1: note: expanded from here StringSetTestCommon__Prefix ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__Prefix >, seqan::Owner > > >::StringSetTestCommon__Prefix' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, void> >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2080:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, Prefix) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue, seqan::Packed > >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Packed > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Packed > >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Packed > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment, seqan::Packed > >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue, seqan::Packed > >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Packed > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Packed > >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment > >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue > >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment > >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue > >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment > >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue > >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment > >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue > >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue > >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Array<100> >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment, seqan::Array<100> >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue, seqan::Array<100> >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Array<100> >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Array<100> >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Array<100> >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment, seqan::Array<100> >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue, seqan::Array<100> >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Array<100> >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Array<100> >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue, seqan::Alloc >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Alloc >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Alloc >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue, seqan::Alloc >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Alloc >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue, seqan::Alloc >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 7 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 8 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2243:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(strSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 9 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ In file included from /<>/tests/sequence/test_stringset_v2.cpp:42: In file included from /<>/tests/sequence/test_string_set.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence/test_string_set.h:2200:30: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TSetPrefixOnValue pref = prefix(set, TSetPosition(0, 3)); ^ /<>/tests/sequence/test_string_set.h:2246:5: note: in instantiation of function template specialization 'testStringSetPrefixOnValue >, seqan::Owner > > >' requested here testStringSetPrefixOnValue(constStrSet); ^ /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::runTest' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :101:1: note: expanded from here StringSetTestCommon__PrefixOnValue ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'StringSetTestCommon__PrefixOnValue >, seqan::Owner > > >::StringSetTestCommon__PrefixOnValue' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > >::make' requested here return TypedTestFactory_::make(testCaseName, testName); ^ /<>/include/seqan/basic/test_system.h:250:56: note: (skipping 9 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > >::make' requested here /<>/include/seqan/basic/test_system.h:250:56: note: in instantiation of member function 'seqan::TypedTestFactory_ > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > >::make' requested here /<>/tests/sequence/test_string_set.h:2228:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Packed > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList > >, seqan::Owner > >, seqan::TagList, seqan::Array<100> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Array<1000> >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList, seqan::Alloc >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, seqan::TagList >, seqan::Owner > >, void> > > > > > > > > > > > > > > > > > >::make' requested here SEQAN_TYPED_TEST(StringSetTestCommon, PrefixOnValue) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ 57 warnings generated. [ 28%] Linking CXX executable ../../bin/test_stringset_v2 cd /<>/obj-x86_64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stringset_v2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -o ../../bin/test_stringset_v2 -lrt -lz -lbz2 [ 28%] Linking CXX executable ../../bin/test_seeds_banded_chain_alignment_interface cd /<>/obj-x86_64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -o ../../bin/test_seeds_banded_chain_alignment_interface -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_stringset_v2 make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence /<>/obj-x86_64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake --color= Scanning dependencies of target test_sequence_v2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/sequence/CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -c /<>/tests/sequence/test_sequence_v2.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_banded_chain_alignment_interface make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence /<>/obj-x86_64-linux-gnu/tests/sequence/CMakeFiles/test_sequence.dir/DependInfo.cmake --color= Scanning dependencies of target test_sequence make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/sequence/CMakeFiles/test_sequence.dir/test_sequence.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence.dir/test_sequence.cpp.o -c /<>/tests/sequence/test_sequence.cpp In file included from /<>/tests/sequence/test_sequence.cpp:37: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/tests/sequence/test_string.h:404:13: note: in implicit copy constructor for 'seqan::String > >' first required here TMe str4 = "hamster"; ^ /<>/tests/sequence/test_string.h:528:5: note: in instantiation of function template specialization 'TestStringBasics > > >' requested here TestStringBasics > >(); ^ /<>/tests/sequence/test_sequence.cpp:87:2: note: in instantiation of function template specialization 'SEQAN_TEST_String_Packed' requested here SEQAN_CALL_TEST(String_Packed); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :84:1: note: expanded from here SEQAN_TEST_String_Packed ^ In file included from /<>/tests/sequence/test_sequence.cpp:37: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/tests/sequence/test_string.h:404:13: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here TMe str4 = "hamster"; ^ /<>/tests/sequence/test_string.h:529:5: note: in instantiation of function template specialization 'TestStringBasics, seqan::Packed > > >' requested here TestStringBasics > >(); ^ /<>/tests/sequence/test_sequence.cpp:87:2: note: in instantiation of function template specialization 'SEQAN_TEST_String_Packed' requested here SEQAN_CALL_TEST(String_Packed); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :84:1: note: expanded from here SEQAN_TEST_String_Packed ^ In file included from /<>/tests/sequence/test_sequence.cpp:37: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String, seqan::Packed > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/tests/sequence/test_string.h:404:13: note: in implicit copy constructor for 'seqan::String, seqan::Packed > >' first required here TMe str4 = "hamster"; ^ /<>/tests/sequence/test_string.h:530:5: note: in instantiation of function template specialization 'TestStringBasics, seqan::Packed > > >' requested here TestStringBasics > >(); ^ /<>/tests/sequence/test_sequence.cpp:87:2: note: in instantiation of function template specialization 'SEQAN_TEST_String_Packed' requested here SEQAN_CALL_TEST(String_Packed); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :84:1: note: expanded from here SEQAN_TEST_String_Packed ^ 3 warnings generated. [ 28%] Linking CXX executable ../../bin/test_sequence cd /<>/obj-x86_64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence.dir/test_sequence.cpp.o -o ../../bin/test_sequence -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_sequence make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence_journaled /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence_journaled /<>/obj-x86_64-linux-gnu/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/DependInfo.cmake --color= Scanning dependencies of target test_sequence_journaled make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/sequence_journaled && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -c /<>/tests/sequence_journaled/test_sequence_journaled.cpp In file included from /<>/tests/sequence_journaled/test_sequence_journaled.cpp:38: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::SortedArray, seqan::Alloc > >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/tests/sequence_journaled/test_sequence_journaled.h:1117:27: note: in implicit copy constructor for 'seqan::Segment, seqan::SortedArray, seqan::Alloc > >, seqan::PrefixSegment>' first required here TPrefix prefix1 = prefix(journaledString, 3); ^ /<>/tests/sequence_journaled/test_sequence_journaled.h:1285:5: note: in instantiation of function template specialization 'testJournaledStringSegmentsReadOnly' requested here testJournaledStringSegmentsReadOnly(SortedArray()); ^ /<>/tests/sequence_journaled/test_sequence_journaled.cpp:66:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_sequence_journaled_sorted_array_segments_read_only' requested here SEQAN_CALL_TEST(test_sequence_journaled_sorted_array_segments_read_only); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :7:1: note: expanded from here SEQAN_TEST_test_sequence_journaled_sorted_array_segments_read_only ^ 1 warning generated. [ 29%] Linking CXX executable ../../bin/test_sequence_journaled cd /<>/obj-x86_64-linux-gnu/tests/sequence_journaled && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence_journaled.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -o ../../bin/test_sequence_journaled -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target test_sequence_journaled make -f tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/DependInfo.cmake --color= Scanning dependencies of target test_simd_vector_avx512_cnl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/test_simd_vector.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -mavx512ifma -mavx512vbmi -o CMakeFiles/test_simd_vector_avx512_cnl.dir/test_simd_vector.cpp.o -c /<>/tests/simd/test_simd_vector.cpp [ 29%] Linking CXX executable ../../bin/test_simd_vector_avx512_cnl cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simd_vector_avx512_cnl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simd_vector_avx512_cnl.dir/test_simd_vector.cpp.o -o ../../bin/test_simd_vector_avx512_cnl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target test_simd_vector_avx512_cnl make -f tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/DependInfo.cmake --color= Scanning dependencies of target test_simd_vector_avx512_skx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/test_simd_vector.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512bw -mavx512dq -mavx512vl -o CMakeFiles/test_simd_vector_avx512_skx.dir/test_simd_vector.cpp.o -c /<>/tests/simd/test_simd_vector.cpp [ 29%] Linking CXX executable ../../bin/test_simd_vector_avx512_skx cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simd_vector_avx512_skx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simd_vector_avx512_skx.dir/test_simd_vector.cpp.o -o ../../bin/test_simd_vector_avx512_skx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target test_simd_vector_avx512_skx make -f tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/DependInfo.cmake --color= Scanning dependencies of target test_simd_vector_avx512_knl make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/test_simd_vector.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx512f -mavx512cd -mavx512er -mavx512pf -o CMakeFiles/test_simd_vector_avx512_knl.dir/test_simd_vector.cpp.o -c /<>/tests/simd/test_simd_vector.cpp [ 29%] Linking CXX executable ../../bin/test_simd_vector_avx512_knl cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simd_vector_avx512_knl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simd_vector_avx512_knl.dir/test_simd_vector.cpp.o -o ../../bin/test_simd_vector_avx512_knl -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target test_simd_vector_avx512_knl make -f tests/simd/CMakeFiles/test_simd_vector_avx2.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx2.dir/DependInfo.cmake --color= Scanning dependencies of target test_simd_vector_avx2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx2.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Building CXX object tests/simd/CMakeFiles/test_simd_vector_avx2.dir/test_simd_vector.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -mavx2 -o CMakeFiles/test_simd_vector_avx2.dir/test_simd_vector.cpp.o -c /<>/tests/simd/test_simd_vector.cpp [ 29%] Linking CXX executable ../../bin/test_simd_vector_avx2 cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simd_vector_avx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simd_vector_avx2.dir/test_simd_vector.cpp.o -o ../../bin/test_simd_vector_avx2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target test_simd_vector_avx2 make -f tests/simd/CMakeFiles/test_simd_vector_sse4.dir/build.make tests/simd/CMakeFiles/test_simd_vector_sse4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_sse4.dir/DependInfo.cmake --color= Scanning dependencies of target test_simd_vector_sse4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_sse4.dir/build.make tests/simd/CMakeFiles/test_simd_vector_sse4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/simd/CMakeFiles/test_simd_vector_sse4.dir/test_simd_vector.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -msse4 -o CMakeFiles/test_simd_vector_sse4.dir/test_simd_vector.cpp.o -c /<>/tests/simd/test_simd_vector.cpp [ 30%] Linking CXX executable ../../bin/test_simd_vector_sse4 cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simd_vector_sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simd_vector_sse4.dir/test_simd_vector.cpp.o -o ../../bin/test_simd_vector_sse4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_simd_vector_sse4 make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector.dir/DependInfo.cmake --color= Scanning dependencies of target test_simd_vector make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/simd/CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -ftemplate-depth=1024 -o CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o -c /<>/tests/simd/test_simd_vector.cpp [ 30%] Linking CXX executable ../../bin/test_simd_vector cd /<>/obj-x86_64-linux-gnu/tests/simd && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simd_vector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simd_vector.dir/test_simd_vector.cpp.o -o ../../bin/test_simd_vector -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_simd_vector make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simple_intervals_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simple_intervals_io /<>/obj-x86_64-linux-gnu/tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_simple_intervals_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/simple_intervals_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o -c /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp In file included from /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:38: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::Tag >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::Tag, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:103:34: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::SimpleIntervalsFileIn simple_intervalsIn(input); ^ /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:157:2: note: in instantiation of function template specialization 'SEQAN_TEST_test_simple_intervals_io_smart_file_read' requested here SEQAN_CALL_TEST(test_simple_intervals_io_smart_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_test_simple_intervals_io_smart_file_read ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:38: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::Tag >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::Tag, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:103:34: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::SimpleIntervalsFileIn simple_intervalsIn(input); ^ /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:157:2: note: in instantiation of function template specialization 'SEQAN_TEST_test_simple_intervals_io_smart_file_read' requested here SEQAN_CALL_TEST(test_simple_intervals_io_smart_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_test_simple_intervals_io_smart_file_read ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:38: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::SimpleIntervals_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:657:10: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::Tag, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:103:34: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::SimpleIntervalsFileIn simple_intervalsIn(input); ^ /<>/tests/simple_intervals_io/test_simple_intervals_io.cpp:157:2: note: in instantiation of function template specialization 'SEQAN_TEST_test_simple_intervals_io_smart_file_read' requested here SEQAN_CALL_TEST(test_simple_intervals_io_smart_file_read); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_test_simple_intervals_io_smart_file_read ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 3 warnings generated. [ 30%] Linking CXX executable ../../bin/test_simple_intervals_io cd /<>/obj-x86_64-linux-gnu/tests/simple_intervals_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simple_intervals_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_simple_intervals_io.dir/test_simple_intervals_io.cpp.o -o ../../bin/test_simple_intervals_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_simple_intervals_io make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/statistics /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/statistics /<>/obj-x86_64-linux-gnu/tests/statistics/CMakeFiles/test_statistics.dir/DependInfo.cmake --color= Scanning dependencies of target test_statistics make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/statistics/CMakeFiles/test_statistics.dir/test_statistics.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/statistics && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_statistics.dir/test_statistics.cpp.o -c /<>/tests/statistics/test_statistics.cpp In file included from /<>/tests/statistics/test_statistics.cpp:37: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/find/find_wumanber.h:187:18: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here for (pit = begin(needle(me)); pit != pit_end; ++pit) ^ /<>/include/seqan/find/find_wumanber.h:399:47: note: in instantiation of member function 'seqan::WuManberImpl_, seqan::Alloc >, seqan::Owner > >, 2>::initialize' requested here if (me.q == 2) WuManberImpl_::initialize(me); ^ /<>/include/seqan/find/find_pattern_base.h:255:5: note: in instantiation of function template specialization 'seqan::_reinitPattern, seqan::Alloc >, seqan::Owner > > >' requested here _reinitPattern(me); ^ /<>/include/seqan/find/find_wumanber.h:97:9: note: in instantiation of function template specialization 'seqan::setHost, seqan::Alloc >, seqan::Owner > >, seqan::Tag, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here setHost(*this, std::forward(ndl)); ^ /<>/include/seqan/statistics/statistics_base.h:103:56: note: in instantiation of function template specialization 'seqan::Pattern, seqan::Alloc >, seqan::Owner > >, seqan::Tag >::Pattern, seqan::Alloc >, seqan::Owner > > &>' requested here Pattern >, TAlgorithm> pattern(needle); ^ /<>/include/seqan/statistics/statistics_base.h:356:9: note: in instantiation of function template specialization 'seqan::_numOccurrences, double, seqan::SimpleType >' requested here _numOccurrences(nW, temp, W, TAlgorithm()); ^ /<>/tests/statistics/test_statistics_base.h:183:15: note: in instantiation of function template specialization 'seqan::zscore, double, seqan::Tag, seqan::String, seqan::Alloc > >' requested here double x3=zscore(W, X, mm, WuManber()); ^ /<>/tests/statistics/test_statistics.cpp:48:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_statistics_statistics' requested here SEQAN_CALL_TEST(test_statistics_statistics); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_statistics_statistics ^ In file included from /<>/tests/statistics/test_statistics.cpp:37: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/find/find_wumanber.h:187:18: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here for (pit = begin(needle(me)); pit != pit_end; ++pit) ^ /<>/include/seqan/find/find_wumanber.h:399:47: note: in instantiation of member function 'seqan::WuManberImpl_, seqan::Alloc >, seqan::Owner > >, 2>::initialize' requested here if (me.q == 2) WuManberImpl_::initialize(me); ^ /<>/include/seqan/find/find_pattern_base.h:255:5: note: in instantiation of function template specialization 'seqan::_reinitPattern, seqan::Alloc >, seqan::Owner > > >' requested here _reinitPattern(me); ^ /<>/include/seqan/find/find_wumanber.h:97:9: note: in instantiation of function template specialization 'seqan::setHost, seqan::Alloc >, seqan::Owner > >, seqan::Tag, seqan::StringSet, seqan::Alloc >, seqan::Owner > > &>' requested here setHost(*this, std::forward(ndl)); ^ /<>/include/seqan/statistics/statistics_base.h:103:56: note: in instantiation of function template specialization 'seqan::Pattern, seqan::Alloc >, seqan::Owner > >, seqan::Tag >::Pattern, seqan::Alloc >, seqan::Owner > > &>' requested here Pattern >, TAlgorithm> pattern(needle); ^ /<>/include/seqan/statistics/statistics_base.h:356:9: note: in instantiation of function template specialization 'seqan::_numOccurrences, double, seqan::SimpleType >' requested here _numOccurrences(nW, temp, W, TAlgorithm()); ^ /<>/tests/statistics/test_statistics_base.h:183:15: note: in instantiation of function template specialization 'seqan::zscore, double, seqan::Tag, seqan::String, seqan::Alloc > >' requested here double x3=zscore(W, X, mm, WuManber()); ^ /<>/tests/statistics/test_statistics.cpp:48:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_statistics_statistics' requested here SEQAN_CALL_TEST(test_statistics_statistics); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :118:1: note: expanded from here SEQAN_TEST_test_statistics_statistics ^ 2 warnings generated. [ 30%] Linking CXX executable ../../bin/test_statistics cd /<>/obj-x86_64-linux-gnu/tests/statistics && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_statistics.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_statistics.dir/test_statistics.cpp.o -o ../../bin/test_statistics -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_statistics make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/store /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/store /<>/obj-x86_64-linux-gnu/tests/store/CMakeFiles/test_store.dir/DependInfo.cmake --color= Scanning dependencies of target test_store make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/store/CMakeFiles/test_store.dir/test_store.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/store && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_store.dir/test_store.cpp.o -c /<>/tests/store/test_store.cpp In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_ucsc.h:194:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/tests/store/test_store_io.h:52:5: note: in instantiation of function template specialization 'seqan::readRecords, void>' requested here readRecords(store, fin); ^ /<>/tests/store/test_store.cpp:43:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_read_ucsc_known_genes' requested here SEQAN_CALL_TEST(test_store_io_read_ucsc_known_genes); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :68:1: note: expanded from here SEQAN_TEST_test_store_io_read_ucsc_known_genes ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/tests/store/test_store_io.h:55:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ /<>/tests/store/test_store.cpp:43:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_read_ucsc_known_genes' requested here SEQAN_CALL_TEST(test_store_io_read_ucsc_known_genes); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :68:1: note: expanded from here SEQAN_TEST_test_store_io_read_ucsc_known_genes ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/store/test_store_io.h:346:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn f(toCString(gffPath)); ^ /<>/tests/store/test_store.cpp:48:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_read_gff' requested here SEQAN_CALL_TEST(test_store_io_read_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :74:1: note: expanded from here SEQAN_TEST_test_store_io_read_gff ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/store/test_store_io.h:346:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn f(toCString(gffPath)); ^ /<>/tests/store/test_store.cpp:48:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_read_gff' requested here SEQAN_CALL_TEST(test_store_io_read_gff); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :74:1: note: expanded from here SEQAN_TEST_test_store_io_read_gff ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_io.h:273:65: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here matePairEl.readId[0] = lexicalCast(prefix(buffer, comma)); ^ /<>/tests/store/test_store_io.h:757:15: note: in instantiation of function template specialization 'seqan::read, void, seqan::FragmentStoreConfig >' requested here int res = read(store, fAmosIn, seqan::Amos()); ^ /<>/tests/store/test_store.cpp:56:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_readwrite_amos' requested here SEQAN_CALL_TEST(test_store_io_readwrite_amos); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :82:1: note: expanded from here SEQAN_TEST_test_store_io_readwrite_amos ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/tests/store/test_store_io.h:731:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, toCString(inPathFasta)); ^ /<>/tests/store/test_store.cpp:58:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_write_amos' requested here SEQAN_CALL_TEST(test_store_io_write_amos); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :86:1: note: expanded from here SEQAN_TEST_test_store_io_write_amos ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/store/test_store.cpp:38: In file included from /<>/tests/store/test_store_io.h:38: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/tests/store/test_store_io.h:731:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, toCString(inPathFasta)); ^ /<>/tests/store/test_store.cpp:58:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_store_io_write_amos' requested here SEQAN_CALL_TEST(test_store_io_write_amos); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :86:1: note: expanded from here SEQAN_TEST_test_store_io_write_amos ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 30%] Linking CXX executable ../../bin/test_sequence_v2 cd /<>/obj-x86_64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence_v2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -o ../../bin/test_sequence_v2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_sequence_v2 make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/stream /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/stream /<>/obj-x86_64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake --color= Scanning dependencies of target test_stream make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/stream/CMakeFiles/test_stream.dir/test_stream.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/stream && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_stream.dir/test_stream.cpp.o -c /<>/tests/stream/test_stream.cpp In file included from /<>/tests/stream/test_stream.cpp:39: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:294:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here open(*this, fileName, openMode); ^ /<>/tests/stream/test_stream_virtual_stream.h:81:32: note: in instantiation of member function 'seqan::VirtualStream, std::char_traits >::VirtualStream' requested here VirtualStream vstream(toCString(fileName), OPEN_RDONLY); ^ /<>/tests/stream/test_stream_virtual_stream.h:77:1: note: in instantiation of member function 'VStreamTest__Construct >::runTest' requested here SEQAN_TYPED_TEST(VStreamTest, Construct) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :7:1: note: expanded from here VStreamTest__Construct ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'VStreamTest__Construct >::VStreamTest__Construct' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/stream/test_stream_virtual_stream.h:77:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >::make' requested here SEQAN_TYPED_TEST(VStreamTest, Construct) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/stream/test_stream.cpp:39: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:294:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here open(*this, fileName, openMode); ^ /<>/tests/stream/test_stream_virtual_stream.h:81:32: note: in instantiation of member function 'seqan::VirtualStream, std::char_traits >::VirtualStream' requested here VirtualStream vstream(toCString(fileName), OPEN_RDONLY); ^ /<>/tests/stream/test_stream_virtual_stream.h:77:1: note: in instantiation of member function 'VStreamTest__Construct >::runTest' requested here SEQAN_TYPED_TEST(VStreamTest, Construct) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :7:1: note: expanded from here VStreamTest__Construct ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'VStreamTest__Construct >::VStreamTest__Construct' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/stream/test_stream_virtual_stream.h:77:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >::make' requested here SEQAN_TYPED_TEST(VStreamTest, Construct) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/stream/test_stream.cpp:39: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:285:9: note: in instantiation of function template specialization 'seqan::open >' requested here open(*this, stream); ^ /<>/tests/stream/test_stream_virtual_stream.h:167:32: note: in instantiation of member function 'seqan::VirtualStream, std::char_traits >::VirtualStream' requested here VirtualStream vstream(file); ^ /<>/tests/stream/test_stream_virtual_stream.h:160:1: note: in instantiation of member function 'VStreamTest__AutoDetection >::runTest' requested here SEQAN_TYPED_TEST(VStreamTest, AutoDetection) ^ /<>/include/seqan/basic/test_system.h:354:9: note: expanded from macro 'SEQAN_TYPED_TEST' SEQAN_TEST_NAME_(testCaseName, testName)(){} \ ^ /<>/include/seqan/basic/test_system.h:273:5: note: expanded from macro 'SEQAN_TEST_NAME_' testCaseName ## __ ## testName ^ :131:1: note: expanded from here VStreamTest__AutoDetection ^ /<>/include/seqan/basic/test_system.h:248:102: note: in instantiation of member function 'VStreamTest__AutoDetection >::VStreamTest__AutoDetection' requested here TestDescription_ * desc = new TestDescription_(testCaseName, testName, typeName.c_str(), new TTestCase); ^ /<>/tests/stream/test_stream_virtual_stream.h:160:1: note: in instantiation of member function 'seqan::TypedTestFactory_, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >::make' requested here SEQAN_TYPED_TEST(VStreamTest, AutoDetection) ^ /<>/include/seqan/basic/test_system.h:364:35: note: expanded from macro 'SEQAN_TYPED_TEST' >::make(SEQAN_MKSTRING(testCaseName), SEQAN_MKSTRING(testName)); \ ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 11 warnings generated. [ 30%] Linking CXX executable ../../bin/test_store cd /<>/obj-x86_64-linux-gnu/tests/store && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_store.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_store.dir/test_store.cpp.o -o ../../bin/test_store -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_store make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/swift_local /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/swift_local /<>/obj-x86_64-linux-gnu/tests/swift_local/CMakeFiles/test_find_swift.dir/DependInfo.cmake --color= Scanning dependencies of target test_find_swift make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/swift_local/CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/swift_local && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o -c /<>/tests/swift_local/test_find_swift.cpp In file included from /<>/tests/swift_local/test_find_swift.cpp:37: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: in instantiation of function template specialization 'seqan::host, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >' requested here TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/index/find_swift.h:1929:9: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > >, double, int, seqan::Tag >' requested here _patternInit(pattern, errorRate, minLength); ^ /<>/tests/swift_local/test_find_swift.cpp:53:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/tests/swift_local/test_find_swift.cpp:75:2: note: in instantiation of function template specialization 'testLocalSwift, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::IndexQGram, seqan::Tag > > >' requested here testLocalSwift(finder_swift, pattern_swift, 0.1, 6, expectedPositions); ^ In file included from /<>/tests/swift_local/test_find_swift.cpp:37: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: in instantiation of function template specialization 'seqan::host, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >' requested here TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/index/find_swift.h:1929:9: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, double, int, seqan::Tag >' requested here _patternInit(pattern, errorRate, minLength); ^ /<>/tests/swift_local/test_find_swift.cpp:53:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/tests/swift_local/test_find_swift.cpp:108:2: note: in instantiation of function template specialization 'testLocalSwift, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here testLocalSwift(finder_swift, pattern_swift, 0.1, 6, expectedPositions); ^ In file included from /<>/tests/swift_local/test_find_swift.cpp:38: In file included from /<>/include/seqan/seeds.h:52: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/tests/swift_local/test_find_swift.cpp:219:34: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here Align alignment = testLongestEpsMatch(seq1, seq2); ^ /<>/tests/swift_local/test_find_swift.cpp:321:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_longest_epsMatch' requested here SEQAN_CALL_TEST(test_longest_epsMatch); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :12:1: note: expanded from here SEQAN_TEST_test_longest_epsMatch ^ In file included from /<>/tests/swift_local/test_find_swift.cpp:36: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:361:18: note: in implicit copy assignment operator for 'seqan::Triple' first required here *__result = std::move(*__first); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:404:22: note: in instantiation of function template specialization 'std::__copy_move::__copy_m *, seqan::Triple *>' requested here _Category>::__copy_m(__first, __last, __result); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:441:8: note: in instantiation of function template specialization 'std::__copy_move_a *, seqan::Triple *>' requested here std::__copy_move_a<_IsMove>(std::__niter_base(__first), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:505:19: note: in instantiation of function template specialization 'std::__copy_move_a2 *, seqan::Triple *>' requested here return std::__copy_move_a2(std::__miter_base(__first), ^ /<>/include/seqan/basic/array_construct_destruct.h:760:10: note: in instantiation of function template specialization 'std::move *, seqan::Triple *>' requested here std::move(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1188:5: note: (skipping 11 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayMoveForwardDefault(source_begin, source_end, target_begin); ^ /<>/tests/swift_local/../../apps/stellar/stellar.h:126:9: note: in instantiation of function template specialization 'seqan::replace, seqan::Alloc > &, unsigned long, unsigned long, seqan::String, seqan::Alloc > >' requested here replace(queue, len-3, len, newMerger); ^ /<>/tests/swift_local/../../apps/stellar/stellar.h:182:14: note: in instantiation of function template specialization '_negativeMerge >' requested here if (!_negativeMerge(queue)) { ^ /<>/tests/swift_local/test_find_swift.cpp:246:5: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(align, scoring, scoreDropOff, minScore, aliString); ^ /<>/tests/swift_local/test_find_swift.cpp:255:5: note: in instantiation of function template specialization 'testXDropAlign, seqan::Alloc >, seqan::Score >, seqan::String, seqan::Alloc >, seqan::Tag >, seqan::Alloc >, int>' requested here testXDropAlign(seq1, seq2, scoring, 3/*scoreDropOff*/, 10/*minScore*/, aliString); ^ /<>/tests/swift_local/test_find_swift.cpp:322:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_split_xDrop_align' requested here SEQAN_CALL_TEST(test_split_xDrop_align); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :14:1: note: expanded from here SEQAN_TEST_test_split_xDrop_align ^ 4 warnings generated. [ 30%] Linking CXX executable ../../bin/test_find_swift cd /<>/obj-x86_64-linux-gnu/tests/swift_local && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find_swift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o -o ../../bin/test_find_swift -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_find_swift make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/tabix_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/tabix_io /<>/obj-x86_64-linux-gnu/tests/tabix_io/CMakeFiles/test_tabix_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_tabix_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/tabix_io/CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/tabix_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o -c /<>/tests/tabix_io/test_tabix_io.cpp 3 warnings generated. [ 30%] Linking CXX executable ../../bin/test_stream cd /<>/obj-x86_64-linux-gnu/tests/stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stream.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_stream.dir/test_stream.cpp.o -o ../../bin/test_stream -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target test_stream make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/translation /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/translation /<>/obj-x86_64-linux-gnu/tests/translation/CMakeFiles/test_translation.dir/DependInfo.cmake --color= Scanning dependencies of target test_translation make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object tests/translation/CMakeFiles/test_translation.dir/test_translation.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/translation && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_translation.dir/test_translation.cpp.o -c /<>/tests/translation/test_translation.cpp In file included from /<>/tests/tabix_io/test_tabix_io.cpp:38: In file included from /<>/tests/tabix_io/test_tabix_io.h:42: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/tabix_io/tabix_index_tbi.h:446:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(tbi, filename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/tabix_io/test_tabix_io.cpp:38: In file included from /<>/tests/tabix_io/test_tabix_io.h:42: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/tabix_io/tabix_index_tbi.h:446:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(tbi, filename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/tabix_io/test_tabix_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/tabix_io/test_tabix_io.h:51:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::VcfFileIn vcfFile(toCString(vcfPath)); ^ /<>/tests/tabix_io/test_tabix_io.cpp:43:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_tabix_io_read_indexed_vcf' requested here SEQAN_CALL_TEST(test_tabix_io_read_indexed_vcf); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :59:1: note: expanded from here SEQAN_TEST_test_tabix_io_read_indexed_vcf ^ In file included from /<>/tests/tabix_io/test_tabix_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/tabix_io/test_tabix_io.h:51:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::VcfFileIn vcfFile(toCString(vcfPath)); ^ /<>/tests/tabix_io/test_tabix_io.cpp:43:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_tabix_io_read_indexed_vcf' requested here SEQAN_CALL_TEST(test_tabix_io_read_indexed_vcf); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :59:1: note: expanded from here SEQAN_TEST_test_tabix_io_read_indexed_vcf ^ In file included from /<>/tests/tabix_io/test_tabix_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/include/seqan/vcf_io/vcf_file.h:198:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >' requested here readHeader(header, context(file), file.iter, file.format); ^ /<>/tests/tabix_io/test_tabix_io.h:55:5: note: in instantiation of function template specialization 'seqan::readHeader' requested here readHeader(header, vcfFile); ^ /<>/tests/tabix_io/test_tabix_io.cpp:43:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_tabix_io_read_indexed_vcf' requested here SEQAN_CALL_TEST(test_tabix_io_read_indexed_vcf); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :59:1: note: expanded from here SEQAN_TEST_test_tabix_io_read_indexed_vcf ^ In file included from /<>/tests/translation/test_translation.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/translation/translation.h:289:15: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here TVal val(prefix(value(source, i/6), length(value(source,i/6)) - (i % 3))); ^ /<>/include/seqan/translation/translation.h:331:13: note: in instantiation of function template specialization 'seqan::_translateImplLoop, seqan::Owner >, seqan::Dependent >, seqan::String, seqan::Alloc >, seqan::CANONICAL>' requested here _translateImplLoop(target, i, source, GeneticCode(), Frames_()); ^ /<>/include/seqan/translation/translation.h:361:5: note: in instantiation of function template specialization 'seqan::_translateImplLoopOMPWrapper, seqan::Alloc >, seqan::Dependent > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, '\x06', seqan::CANONICAL>' requested here _translateImplLoopOMPWrapper(target, source, GeneticCode(), ^ /<>/include/seqan/translation/translation.h:428:5: note: in instantiation of function template specialization 'seqan::_translateImpl, seqan::Owner >, seqan::Dependent >, seqan::String, seqan::Alloc >, seqan::Tag, seqan::CANONICAL, '\x06'>' requested here _translateImpl(target, set, GeneticCode(), Frames_(), ^ /<>/include/seqan/translation/translation.h:538:16: note: in instantiation of function template specialization 'seqan::_translateInputWrap, seqan::Owner >, seqan::String, seqan::Alloc >, seqan::Tag, seqan::CANONICAL, '\x06'>' requested here return _translateInputWrap(target, source, TCode(), Frames_<6>(), ^ /<>/include/seqan/translation/translation.h:589:12: note: in instantiation of function template specialization 'seqan::translate, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Tag, seqan::CANONICAL>' requested here return translate(target, source, frames, GeneticCode<>(), TParallelism()); ^ /<>/tests/translation/test_translation.h:420:9: note: in instantiation of function template specialization 'seqan::translate, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here translate(res, str, SINGLE_FRAME, TParallelism()); ^ /<>/tests/translation/test_translation.h:460:5: note: in instantiation of function template specialization 'test_translation_onestring_multiframe_impl, seqan::Alloc >, seqan::Owner > >, seqan::Tag >' requested here test_translation_onestring_multiframe_impl(); ^ /<>/tests/translation/test_translation.cpp:46:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_translation_onestring_multiframe_serial' requested here SEQAN_CALL_TEST(test_translation_onestring_multiframe_serial); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :86:1: note: expanded from here SEQAN_TEST_test_translation_onestring_multiframe_serial ^ In file included from /<>/tests/translation/test_translation.cpp:38: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/translation/translation.h:289:15: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here TVal val(prefix(value(source, i/6), length(value(source,i/6)) - (i % 3))); ^ /<>/include/seqan/translation/translation.h:331:13: note: in instantiation of function template specialization 'seqan::_translateImplLoop, seqan::Owner >, seqan::Owner >, seqan::String, seqan::Alloc >, seqan::CANONICAL>' requested here _translateImplLoop(target, i, source, GeneticCode(), Frames_()); ^ /<>/include/seqan/translation/translation.h:361:5: note: in instantiation of function template specialization 'seqan::_translateImplLoopOMPWrapper, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, '\x06', seqan::CANONICAL>' requested here _translateImplLoopOMPWrapper(target, source, GeneticCode(), ^ /<>/include/seqan/translation/translation.h:412:5: note: in instantiation of function template specialization 'seqan::_translateImpl, seqan::Owner >, seqan::Owner >, seqan::String, seqan::Alloc >, seqan::Tag, seqan::CANONICAL, '\x06'>' requested here _translateImpl(target, source, GeneticCode(), Frames_(), ^ /<>/include/seqan/translation/translation.h:538:16: note: in instantiation of function template specialization 'seqan::_translateInputWrap, seqan::Owner >, seqan::Owner >, seqan::String, seqan::Alloc >, seqan::Tag, seqan::CANONICAL, '\x06'>' requested here return _translateInputWrap(target, source, TCode(), Frames_<6>(), ^ /<>/include/seqan/translation/translation.h:589:12: note: in instantiation of function template specialization 'seqan::translate, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Tag, seqan::CANONICAL>' requested here return translate(target, source, frames, GeneticCode<>(), TParallelism()); ^ /<>/tests/translation/test_translation.h:493:9: note: in instantiation of function template specialization 'seqan::translate, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Tag >' requested here translate(res, source, SINGLE_FRAME, TParallelism()); ^ /<>/tests/translation/test_translation.h:601:9: note: in instantiation of function template specialization 'test_translation_stringset_multiframe_impl, seqan::Alloc >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::Tag >' requested here test_translation_stringset_multiframe_impl(comp, source, TParallelism()); ^ /<>/tests/translation/test_translation.h:644:5: note: in instantiation of function template specialization 'test_translation_stringset_multiframe_impl0 >, seqan::Tag >' requested here test_translation_stringset_multiframe_impl0, Serial >(); ^ /<>/tests/translation/test_translation.cpp:48:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_translation_stringset_multiframe_serial' requested here SEQAN_CALL_TEST(test_translation_stringset_multiframe_serial); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :90:1: note: expanded from here SEQAN_TEST_test_translation_stringset_multiframe_serial ^ 5 warnings generated. [ 31%] Linking CXX executable ../../bin/test_tabix_io cd /<>/obj-x86_64-linux-gnu/tests/tabix_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tabix_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o -o ../../bin/test_tabix_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target test_tabix_io make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/ucsc_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/ucsc_io /<>/obj-x86_64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_ucsc_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/ucsc_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -c /<>/tests/ucsc_io/test_ucsc_io.cpp In file included from /<>/tests/ucsc_io/test_ucsc_io.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/ucsc_io/ucsc_io.h:349:42: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (length(record.transName) >= 4 && prefix(record.transName, 4) == "GENE") ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:169:9: note: in instantiation of function template specialization 'seqan::writeRecord > >' requested here writeRecord(outString, record, UcscKnownIsoforms()); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:304:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_ucsc_io_write_record_ucsc_known_isoforms' requested here SEQAN_CALL_TEST(test_ucsc_io_write_record_ucsc_known_isoforms); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :105:1: note: expanded from here SEQAN_TEST_test_ucsc_io_write_record_ucsc_known_isoforms ^ In file included from /<>/tests/ucsc_io/test_ucsc_io.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open >, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:181:16: note: in instantiation of member function 'seqan::FormattedFile >, seqan::Tag, void>::FormattedFile' requested here UcscFileIn ucscFileIn(toCString(ucscPath)); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:307:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes' requested here SEQAN_CALL_TEST(test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :107:1: note: expanded from here SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes ^ In file included from /<>/tests/ucsc_io/test_ucsc_io.cpp:42: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open >, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:181:16: note: in instantiation of member function 'seqan::FormattedFile >, seqan::Tag, void>::FormattedFile' requested here UcscFileIn ucscFileIn(toCString(ucscPath)); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:307:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes' requested here SEQAN_CALL_TEST(test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :107:1: note: expanded from here SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/ucsc_io/test_ucsc_io.cpp:42: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open >, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:181:16: note: in instantiation of member function 'seqan::FormattedFile >, seqan::Tag, void>::FormattedFile' requested here UcscFileIn ucscFileIn(toCString(ucscPath)); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:307:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes' requested here SEQAN_CALL_TEST(test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :107:1: note: expanded from here SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/ucsc_io/test_ucsc_io.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open >, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:181:16: note: in instantiation of member function 'seqan::FormattedFile >, seqan::Tag, void>::FormattedFile' requested here UcscFileIn ucscFileIn(toCString(ucscPath)); ^ /<>/tests/ucsc_io/test_ucsc_io.cpp:307:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes' requested here SEQAN_CALL_TEST(test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :107:1: note: expanded from here SEQAN_TEST_test_ucsc_io_ucsc_file_in_read_record_ucsc_known_genes ^ 5 warnings generated. [ 31%] Linking CXX executable ../../bin/test_ucsc_io cd /<>/obj-x86_64-linux-gnu/tests/ucsc_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_ucsc_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -o ../../bin/test_ucsc_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target test_ucsc_io make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/vcf_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/vcf_io /<>/obj-x86_64-linux-gnu/tests/vcf_io/CMakeFiles/test_vcf_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_vcf_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object tests/vcf_io/CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o cd /<>/obj-x86_64-linux-gnu/tests/vcf_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o -c /<>/tests/vcf_io/test_vcf_io.cpp 2 warnings generated. [ 31%] Linking CXX executable ../../bin/test_translation cd /<>/obj-x86_64-linux-gnu/tests/translation && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_translation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_translation.dir/test_translation.cpp.o -o ../../bin/test_translation -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target test_translation make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/solution4.cpp In file included from /<>/tests/vcf_io/test_vcf_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/tests/vcf_io/test_vcf_io.h:56:5: note: in instantiation of function template specialization 'seqan::readHeader >, unsigned long> > >, seqan::AdaptorIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Owner > >' requested here readHeader(vcfHeader, vcfIOContext, iter, seqan::Vcf()); ^ /<>/tests/vcf_io/test_vcf_io.cpp:43:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_vcf_io_read_vcf_header' requested here SEQAN_CALL_TEST(test_vcf_io_read_vcf_header); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :50:1: note: expanded from here SEQAN_TEST_test_vcf_io_read_vcf_header ^ In file included from /<>/tests/vcf_io/test_vcf_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/vcf_io/test_vcf_io.h:198:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::VcfFileIn vcfStream(toCString(vcfPath)); ^ /<>/tests/vcf_io/test_vcf_io.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_vcf_io_vcf_file_read_record' requested here SEQAN_CALL_TEST(test_vcf_io_vcf_file_read_record); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_vcf_io_vcf_file_read_record ^ In file included from /<>/tests/vcf_io/test_vcf_io.cpp:38: In file included from /<>/tests/vcf_io/test_vcf_io.h:42: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/vcf_io/test_vcf_io.h:198:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::VcfFileIn vcfStream(toCString(vcfPath)); ^ /<>/tests/vcf_io/test_vcf_io.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_vcf_io_vcf_file_read_record' requested here SEQAN_CALL_TEST(test_vcf_io_vcf_file_read_record); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_vcf_io_vcf_file_read_record ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/tests/vcf_io/test_vcf_io.cpp:38: In file included from /<>/tests/vcf_io/test_vcf_io.h:42: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/vcf_io/test_vcf_io.h:198:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::VcfFileIn vcfStream(toCString(vcfPath)); ^ /<>/tests/vcf_io/test_vcf_io.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_vcf_io_vcf_file_read_record' requested here SEQAN_CALL_TEST(test_vcf_io_vcf_file_read_record); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_vcf_io_vcf_file_read_record ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/tests/vcf_io/test_vcf_io.cpp:36: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/tests/vcf_io/test_vcf_io.h:198:22: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::VcfFileIn vcfStream(toCString(vcfPath)); ^ /<>/tests/vcf_io/test_vcf_io.cpp:45:5: note: in instantiation of function template specialization 'SEQAN_TEST_test_vcf_io_vcf_file_read_record' requested here SEQAN_CALL_TEST(test_vcf_io_vcf_file_read_record); ^ /<>/include/seqan/basic/debug_test_system.h:1701:13: note: expanded from macro 'SEQAN_CALL_TEST' SEQAN_TEST_ ## test_name(); \ ^ :54:1: note: expanded from here SEQAN_TEST_test_vcf_io_vcf_file_read_record ^ [ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/unassigned_or_unused/tutorials_custim_io/solution4.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution4 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/solution3.cpp [ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution3 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp [ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/example1.cpp [ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp 5 warnings generated. [ 32%] Linking CXX executable ../../bin/test_vcf_io cd /<>/obj-x86_64-linux-gnu/tests/vcf_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_vcf_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_vcf_io.dir/test_vcf_io.cpp.o -o ../../bin/test_vcf_io -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target test_vcf_io make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_sequence_replace_as make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_sequence/replace_as.cpp [ 32%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp [ 32%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target demo_unassigned_or_unused_tutorial_sequence_replace_as make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp [ 32%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_segmentalignment make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o -c /<>/demos/unassigned_or_unused/segmentalignment.cpp [ 34%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/unassigned_or_unused/tutorial_file_io/mmap_string_example.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_sample_seqs make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o -c /<>/demos/unassigned_or_unused/sample_seqs.cpp In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:25:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn seqFileIn(argv[i]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:26:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(id, seq, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/sample_seqs.cpp:42: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/sample_seqs.cpp:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/sample_seqs.cpp:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/sample_seqs.cpp:42: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:37: In file included from /<>/include/seqan/score.h:40: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/sample_seqs.cpp:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/unassigned_or_unused/sample_seqs.cpp:66:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/sample_seqs.cpp:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Alloc >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/demos/unassigned_or_unused/sample_seqs.cpp:74:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Alloc >, void>' requested here readRecords(ids, seqs, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin, seqan::Alloc >, seqan::Owner > >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:37:34: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type mumIt(index, 5); ^ In file included from /<>/demos/unassigned_or_unused/segmentalignment.cpp:2: In file included from /<>/include/seqan/graph_msa.h:40: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Owner >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/demos/unassigned_or_unused/segmentalignment.cpp:57:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Owner > >' requested here matchRefinement(matches, seqs, g); ^ 6 warnings generated. [ 35%] Linking CXX executable ../bin/demo_unassigned_or_unused_sample_seqs cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o -o ../bin/demo_unassigned_or_unused_sample_seqs -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_sample_seqs make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_sam2svg make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o -c /<>/demos/unassigned_or_unused/sam2svg.cpp In file included from /<>/demos/unassigned_or_unused/sam2svg.cpp:5: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/sam2svg.cpp:5: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/sam2svg.cpp:5: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/sam2svg.cpp:5: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/sam2svg.cpp:5: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/unassigned_or_unused/sam2svg.cpp:134:14: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here if (!loadContigs(store, options.fileRefIn.c_str())) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/sam2svg.cpp:5: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/unassigned_or_unused/sam2svg.cpp:134:14: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here if (!loadContigs(store, options.fileRefIn.c_str())) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 15 warnings generated. [ 35%] Linking CXX executable ../bin/demo_unassigned_or_unused_segmentalignment cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o -o ../bin/demo_unassigned_or_unused_segmentalignment -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_segmentalignment make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_parse_lm_stellar make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o -c /<>/demos/unassigned_or_unused/parse_lm_stellar.cpp In file included from /<>/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 35%] Linking CXX executable ../bin/demo_unassigned_or_unused_parse_lm_stellar cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/unassigned_or_unused/parse_lm_stellar.cpp.o -o ../bin/demo_unassigned_or_unused_parse_lm_stellar -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_parse_lm_stellar make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_modifier_modview make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o -c /<>/demos/unassigned_or_unused/modifier_modview.cpp [ 35%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_modview cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/unassigned_or_unused/modifier_modview.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_modview -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_modifier_modview make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_modifier_modreverse make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -c /<>/demos/unassigned_or_unused/modifier_modreverse.cpp [ 35%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_modreverse cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_modreverse -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_modifier_modreverse make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_qgram_counts make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o -c /<>/demos/unassigned_or_unused/index_qgram_counts.cpp 6 warnings generated. [ 35%] Linking CXX executable ../bin/demo_unassigned_or_unused_sam2svg cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/unassigned_or_unused/sam2svg.cpp.o -o ../bin/demo_unassigned_or_unused_sam2svg -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_sam2svg make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_node_predicate make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o -c /<>/demos/unassigned_or_unused/index_node_predicate.cpp [ 35%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_qgram_counts cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o -o ../bin/demo_unassigned_or_unused_index_qgram_counts -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_index_qgram_counts make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_mums make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -c /<>/demos/unassigned_or_unused/index_mums.cpp [ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_node_predicate cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o -o ../bin/demo_unassigned_or_unused_index_node_predicate -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_index_node_predicate make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_lcp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -c /<>/demos/unassigned_or_unused/index_lcp.cpp In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_mums.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin >, seqan::Owner > >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_mums.cpp:22:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/unassigned_or_unused/index_lcp.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/unassigned_or_unused/index_lcp.cpp:23:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(myIndex, EsaSA()); ^ In file included from /<>/demos/unassigned_or_unused/index_lcp.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/unassigned_or_unused/index_lcp.cpp:23:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(myIndex, EsaSA()); ^ In file included from /<>/demos/unassigned_or_unused/index_lcp.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/unassigned_or_unused/index_lcp.cpp:23:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(myIndex, EsaSA()); ^ In file included from /<>/demos/unassigned_or_unused/index_lcp.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/unassigned_or_unused/index_lcp.cpp:23:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(myIndex, EsaSA()); ^ In file included from /<>/demos/unassigned_or_unused/index_lcp.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/unassigned_or_unused/index_lcp.cpp:23:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(myIndex, EsaSA()); ^ In file included from /<>/demos/unassigned_or_unused/index_lcp.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/unassigned_or_unused/index_lcp.cpp:23:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(myIndex, EsaSA()); ^ In file included from /<>/demos/unassigned_or_unused/index_lcp.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/unassigned_or_unused/index_lcp.cpp:23:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(myIndex, EsaSA()); ^ 8 warnings generated. [ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_mums cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_mums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -o ../bin/demo_unassigned_or_unused_index_mums -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_index_mums make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_find make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o -c /<>/demos/unassigned_or_unused/index_find.cpp 7 warnings generated. [ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_lcp cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -o ../bin/demo_unassigned_or_unused_index_lcp -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_index_lcp make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_file_speed make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -c /<>/demos/unassigned_or_unused/file_speed.cpp In file included from /<>/demos/unassigned_or_unused/index_find.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::IndexEsa, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find.cpp:16:12: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder_esa, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find.cpp:3: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_qgram.h:75:25: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexQGram, seqan::Tag > >, const seqan::Tag > >' requested here TIndex &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find.cpp:28:12: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [3]>' requested here while (find(finder_2gram, "be")) ^ 2 warnings generated. [ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o -o ../bin/demo_unassigned_or_unused_index_find -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_index_find make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_file_readwrite make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o -c /<>/demos/unassigned_or_unused/file_readwrite.cpp [ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_speed cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_speed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -o ../bin/demo_unassigned_or_unused_file_speed -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_file_speed make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_file_format make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o -c /<>/demos/unassigned_or_unused/file_format.cpp [ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_readwrite cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/unassigned_or_unused/file_readwrite.cpp.o -o ../bin/demo_unassigned_or_unused_file_readwrite -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_file_readwrite make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_benchmark_stream make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 36%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -c /<>/demos/unassigned_or_unused/benchmark_stream.cpp In file included from /<>/demos/unassigned_or_unused/file_format.cpp:6: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/file_format.cpp:7: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/file_format.cpp:7: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/file_format.cpp:6: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/file_format.cpp:7: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/unassigned_or_unused/file_format.cpp:32:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn sfin("testfile.fa"); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/file_format.cpp:7: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/unassigned_or_unused/file_format.cpp:33:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(fasta_tag, fasta_seq, sfin); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream.cpp:51: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream.cpp:51: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream.cpp:51: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream.cpp:51: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream.cpp:51: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/unassigned_or_unused/benchmark_stream.cpp:165:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn reader(filename); ^ /<>/demos/unassigned_or_unused/benchmark_stream.cpp:183:16: note: in instantiation of function template specialization 'readFileMMapDocument > >' requested here return readFileMMapDocument(filename, options, Owner()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream.cpp:51: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/unassigned_or_unused/benchmark_stream.cpp:200:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, seq, file); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_format cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_format.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o -o ../bin/demo_unassigned_or_unused_file_format -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_file_format make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_bamutil make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -c /<>/demos/unassigned_or_unused/bamutil.cpp In file included from /<>/demos/unassigned_or_unused/bamutil.cpp:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/bamutil.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/bamutil.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/bamutil.cpp:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/bamutil.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:673:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::False>' requested here return _open(file, stream, _mapFileFormatToCompressionFormat(file.format), False()); ^ /<>/demos/unassigned_or_unused/bamutil.cpp:263:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void, std::basic_istream >' requested here success = open(reader, std::cin); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 37%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target demo_unassigned_or_unused_benchmark_stream make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_bam_print_alignments make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o -c /<>/demos/unassigned_or_unused/bam_print_alignments.cpp In file included from /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:76:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(inSeq, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/demos/unassigned_or_unused/bam_print_alignments.cpp:81:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void>' requested here readRecords(refNameStore, seqs, inSeq); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 5 warnings generated. [ 37%] Linking CXX executable ../bin/demo_unassigned_or_unused_bamutil cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bamutil.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -o ../bin/demo_unassigned_or_unused_bamutil -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target demo_unassigned_or_unused_bamutil make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_bam_library_size make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o -c /<>/demos/unassigned_or_unused/bam_library_size.cpp 6 warnings generated. [ 37%] Linking CXX executable ../bin/demo_unassigned_or_unused_bam_print_alignments cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/unassigned_or_unused/bam_print_alignments.cpp.o -o ../bin/demo_unassigned_or_unused_bam_print_alignments -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target demo_unassigned_or_unused_bam_print_alignments make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_arg_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -c /<>/demos/unassigned_or_unused/arg_align.cpp In file included from /<>/demos/unassigned_or_unused/bam_library_size.cpp:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/bam_library_size.cpp:44: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/bam_library_size.cpp:44: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/bam_library_size.cpp:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 37%] Linking CXX executable ../bin/demo_unassigned_or_unused_arg_align cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_arg_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -o ../bin/demo_unassigned_or_unused_arg_align -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target demo_unassigned_or_unused_arg_align make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_alphabet make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o -c /<>/demos/unassigned_or_unused/alphabet.cpp 4 warnings generated. [ 37%] Linking CXX executable ../bin/demo_unassigned_or_unused_bam_library_size cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o -o ../bin/demo_unassigned_or_unused_bam_library_size -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target demo_unassigned_or_unused_bam_library_size make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_vcf_io_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o -c /<>/demos/tutorial/vcf_io/solution3.cpp [ 37%] Linking CXX executable ../bin/demo_unassigned_or_unused_alphabet cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_alphabet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_alphabet.dir/unassigned_or_unused/alphabet.cpp.o -o ../bin/demo_unassigned_or_unused_alphabet -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target demo_unassigned_or_unused_alphabet make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_vcf_io_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o -c /<>/demos/tutorial/vcf_io/solution2.cpp In file included from /<>/demos/tutorial/vcf_io/solution2.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution2.cpp:10:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ In file included from /<>/demos/tutorial/vcf_io/solution2.cpp:1: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution2.cpp:10:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/vcf_io/solution2.cpp:1: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution2.cpp:10:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/vcf_io/solution2.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution2.cpp:10:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ In file included from /<>/demos/tutorial/vcf_io/solution2.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/include/seqan/vcf_io/vcf_file.h:198:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >' requested here readHeader(header, context(file), file.iter, file.format); ^ /<>/demos/tutorial/vcf_io/solution2.cpp:14:9: note: in instantiation of function template specialization 'seqan::readHeader' requested here readHeader(header, vcfIn); ^ [ 38%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution3.dir/tutorial/vcf_io/solution3.cpp.o -o ../bin/demo_tutorial_vcf_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target demo_tutorial_vcf_io_solution3 make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_example_functionality_2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o -c /<>/demos/tutorial/string_sets/example_functionality_2.cpp 5 warnings generated. [ 39%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o -o ../bin/demo_tutorial_vcf_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target demo_tutorial_vcf_io_solution2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_3_workshop_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o -c /<>/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp [ 39%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_functionality_2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o -o ../bin/demo_tutorial_string_sets_example_functionality_2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target demo_tutorial_string_sets_example_functionality_2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_2_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -c /<>/demos/tutorial/string_sets/assignment_2_solution.cpp [ 39%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_3_workshop_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_3_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target demo_tutorial_string_sets_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o -c /<>/demos/tutorial/string_sets/assignment_2.cpp [ 39%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_2_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target demo_tutorial_string_sets_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o -c /<>/demos/tutorial/string_sets/assignment_1_solution.cpp [ 39%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target demo_tutorial_string_sets_assignment_2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_solution5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp [ 40%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target demo_tutorial_string_sets_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_solution4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:56:58: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here Iterator >::Type it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:56:58: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here Iterator >::Type it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:42:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1562:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1532:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, long, unsigned int>' requested here findIntervals(result, g, pm, act_knot, query_begin, query_end); ^ /<>/include/seqan/misc/interval_tree.h:1513:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, long, unsigned int>' requested here findIntervals(result, tree.g, tree.pm, query_begin, query_end); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:109:9: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(result, intervalTrees[ar.contigId], queryBegin, queryEnd); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:42:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1562:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1532:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, long, unsigned int>' requested here findIntervals(result, g, pm, act_knot, query_begin, query_end); ^ /<>/include/seqan/misc/interval_tree.h:1513:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, long, unsigned int>' requested here findIntervals(result, tree.g, tree.pm, query_begin, query_end); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:110:9: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(result, intervalTrees[ar.contigId], queryBegin, queryEnd); ^ 9 warnings generated. [ 40%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp 9 warnings generated. [ 40%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/tutorial/simple_rna_seq/genequant_solution4.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution4 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:54:58: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here Iterator >::Type it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:54:58: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here Iterator >::Type it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:34:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:34:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:40:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:33:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:33:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution2.cpp:39:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ 8 warnings generated. [ 40%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_minimapper make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -c /<>/demos/unassigned_or_unused/minimapper.cpp 8 warnings generated. [ 40%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/tutorial/simple_rna_seq/genequant_solution3.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution3 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/minimapper.cpp:35: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/minimapper.cpp:35: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/minimapper.cpp:35: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/minimapper.cpp:35: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:30:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:30:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/minimapper.cpp:35: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/unassigned_or_unused/minimapper.cpp:73:10: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here if (!loadContigs(fragStore, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:36:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ In file included from /<>/demos/unassigned_or_unused/minimapper.cpp:35: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/unassigned_or_unused/minimapper.cpp:73:10: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here if (!loadContigs(fragStore, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/minimapper.cpp:36: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: in instantiation of function template specialization 'seqan::host, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >' requested here TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/index/find_swift.h:1929:9: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, double, int, seqan::Tag > >' requested here _patternInit(pattern, errorRate, minLength); ^ /<>/include/seqan/index/find_swift.h:1913:12: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag >, int>' requested here return find(finder, pattern, errorRate, 0); ^ /<>/demos/unassigned_or_unused/minimapper.cpp:91:16: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Swift >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::Tag > >, void>' requested here while (find(finder, pattern, EPSILON)) ^ 7 warnings generated. [ 41%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_find_wild make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o -c /<>/demos/unassigned_or_unused/find_wild.cpp 7 warnings generated. [ 42%] Linking CXX executable ../bin/demo_unassigned_or_unused_minimapper cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_minimapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -o ../bin/demo_unassigned_or_unused_minimapper -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_unassigned_or_unused_minimapper make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp [ 42%] Linking CXX executable ../bin/demo_unassigned_or_unused_find_wild cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_find_wild.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o -o ../bin/demo_unassigned_or_unused_find_wild -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_unassigned_or_unused_find_wild make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:59:58: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here Iterator >::Type it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:56:58: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here Iterator >::Type it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:42:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:45:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ 8 warnings generated. [ 42%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_simple_rna_seq_genequant_assignment3 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp 8 warnings generated. [ 42%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_simple_rna_seq_genequant_assignment4 make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_in_depth_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o -c /<>/demos/tutorial/sequences_in_depth/base.cpp [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_in_depth_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/tutorial/sequences_in_depth/base.cpp.o -o ../bin/demo_tutorial_sequences_in_depth_base -lrt -lz -lbz2 In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 42%] Built target demo_tutorial_sequences_in_depth_base make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_iterator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o -c /<>/demos/unassigned_or_unused/iterator.cpp In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment1.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 42%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/tutorial/simple_rna_seq/genequant_assignment1.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_simple_rna_seq_genequant_assignment1 make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o -c /<>/demos/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp [ 42%] Linking CXX executable ../bin/demo_unassigned_or_unused_iterator cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_iterator.dir/unassigned_or_unused/iterator.cpp.o -o ../bin/demo_unassigned_or_unused_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_unassigned_or_unused_iterator make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_example_segments make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o -c /<>/demos/tutorial/sequences/example_segments.cpp [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o -o ../bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_example_conversions_copy make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o -c /<>/demos/tutorial/sequences/example_conversions_copy.cpp In file included from /<>/demos/tutorial/sequences/example_segments.cpp:1: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/demos/tutorial/sequences/example_segments.cpp:11:38: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here Prefix >::Type pre = prefix(dnaSeq, 4); ^ 1 warning generated. [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_example_segments cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_segments.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o -o ../bin/demo_tutorial_sequences_example_segments -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_example_segments make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -c /<>/demos/tutorial/sequences/base.cpp In file included from /<>/demos/tutorial/sequences/example_conversions_copy.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequences/example_conversions_copy.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequences/example_conversions_copy.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequences/example_conversions_copy.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -o ../bin/demo_tutorial_sequences_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_base 4 warnings generated. make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake --color= [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_example_conversions_copy cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o -o ../bin/demo_tutorial_sequences_example_conversions_copy -lrt -lz -lbz2 Scanning dependencies of target demo_tutorial_sequences_assignment_5_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -c /<>/demos/tutorial/sequences/assignment_5_solution.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_example_conversions_copy make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_assignment_3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o -c /<>/demos/tutorial/sequences/assignment_3.cpp [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_5_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_5_solution -lrt -lz -lbz2 [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_assignment_5_solution make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_assignment_2_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o -c /<>/demos/tutorial/sequences/assignment_2_solution.cpp [ 42%] Built target demo_tutorial_sequences_assignment_3 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_assignment_1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o -c /<>/demos/tutorial/sequences/assignment_1_solution.cpp [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o -c /<>/demos/tutorial/sequence_io/solution3.cpp [ 42%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_2_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -c /<>/demos/tutorial/sequence_io/example1.cpp In file included from /<>/demos/tutorial/sequence_io/solution3.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution3.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequence_io/solution3.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/solution3.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/example1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/example1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequence_io/example1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/example1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution3.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/sequence_io/solution3.cpp:10:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, toCString(seqFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/solution3.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/demos/tutorial/sequence_io/solution3.cpp:21:9: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void>' requested here readRecords(ids, seqs, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/example1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/sequence_io/example1.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn seqFileIn(toCString(seqFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/example1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/sequence_io/example1.cpp:12:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(id, seq, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 42%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o -o ../bin/demo_tutorial_sequence_io_solution3 -lrt -lz -lbz2 6 warnings generated. [ 42%] Linking CXX executable ../bin/demo_tutorial_sequence_io_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -o ../bin/demo_tutorial_sequence_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequence_io_solution3 make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequence_io_example1 make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o -c /<>/demos/tutorial/sequence_io/base.cpp Scanning dependencies of target demo_tutorial_seeds_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 42%] Building CXX object demos/CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o -c /<>/demos/tutorial/seeds/example1.cpp In file included from /<>/demos/tutorial/sequence_io/base.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/base.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequence_io/base.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/base.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 42%] Linking CXX executable ../bin/demo_tutorial_seeds_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seeds_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o -o ../bin/demo_tutorial_seeds_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_seeds_example1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution6 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -c /<>/demos/tutorial/seed_and_extend/solution6.cpp In file included from /<>/demos/tutorial/sequence_io/base.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/sequence_io/base.cpp:13:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn seqFileIn(toCString(seqFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/base.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/demos/tutorial/sequence_io/base.cpp:16:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, int>' requested here readRecords(ids, seqs, seqFileIn, 10); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 43%] Linking CXX executable ../bin/demo_tutorial_sequence_io_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o -o ../bin/demo_tutorial_sequence_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target demo_tutorial_sequence_io_base make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -c /<>/demos/tutorial/seed_and_extend/solution5.cpp In file included from /<>/demos/tutorial/seed_and_extend/solution5.cpp:1: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap *, long, seqan::Triple, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop *, long, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4867:12: note: in instantiation of function template specialization 'std::__sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ^ /<>/include/seqan/seeds/seeds_global_chaining.h:170:10: note: in instantiation of function template specialization 'std::sort *>' requested here std::sort(begin(intervalPoints, Standard()), end(intervalPoints, Standard())); ^ /<>/demos/tutorial/seed_and_extend/solution5.cpp:19:5: note: in instantiation of function template specialization 'seqan::chainSeedsGlobally, seqan::DefaultSeedConfig>, seqan::Alloc >, seqan::Seed, seqan::DefaultSeedConfig>, seqan::Tag >' requested here chainSeedsGlobally(result, seedSet, SparseChaining()); ^ 1 warning generated. [ 43%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target demo_tutorial_seed_and_extend_solution5 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -c /<>/demos/tutorial/seed_and_extend/solution2.cpp In file included from /<>/demos/tutorial/seed_and_extend/solution2.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/seeds/seeds_extension.h:809:42: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TDatabasePrefix databasePrefix = prefix(database, beginPositionH(seed)); ^ /<>/demos/tutorial/seed_and_extend/solution2.cpp:23:5: note: in instantiation of function template specialization 'seqan::extendSeed >, seqan::String >, int, seqan::Tag >' requested here extendSeed(seed, seqH, seqV, EXTEND_BOTH, scoringScheme, 3, ^ 1 warning generated. [ 43%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target demo_tutorial_seed_and_extend_solution2 make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_sequence_length make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o -c /<>/demos/unassigned_or_unused/sequence_length.cpp In file included from /<>/demos/unassigned_or_unused/sequence_length.cpp:4: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/sequence_length.cpp:5: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/sequence_length.cpp:5: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/sequence_length.cpp:4: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/sequence_length.cpp:5: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/unassigned_or_unused/sequence_length.cpp:20:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn file(argv[1]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/sequence_length.cpp:5: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/unassigned_or_unused/sequence_length.cpp:28:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(id, seq, file); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 43%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution6 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution6 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target demo_tutorial_seed_and_extend_solution6 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example6 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o -c /<>/demos/tutorial/seed_and_extend/example6.cpp 6 warnings generated. [ 43%] Linking CXX executable ../bin/demo_unassigned_or_unused_sequence_length cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o -o ../bin/demo_unassigned_or_unused_sequence_length -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target demo_unassigned_or_unused_sequence_length make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -c /<>/demos/tutorial/seed_and_extend/example5.cpp In file included from /<>/demos/tutorial/seed_and_extend/example6.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap *, long, seqan::Triple, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop *, long, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4867:12: note: in instantiation of function template specialization 'std::__sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ^ /<>/include/seqan/seeds/seeds_global_chaining.h:170:10: note: in instantiation of function template specialization 'std::sort *>' requested here std::sort(begin(intervalPoints, Standard()), end(intervalPoints, Standard())); ^ /<>/demos/tutorial/seed_and_extend/example6.cpp:22:5: note: in instantiation of function template specialization 'seqan::chainSeedsGlobally, seqan::DefaultSeedConfig>, seqan::Alloc >, seqan::Seed, seqan::DefaultSeedConfig>, seqan::Tag >' requested here chainSeedsGlobally(result, seedSet, SparseChaining()); ^ [ 43%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target demo_tutorial_seed_and_extend_example5 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -c /<>/demos/tutorial/seed_and_extend/example4.cpp 1 warning generated. [ 44%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example6 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example6 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target demo_tutorial_seed_and_extend_example6 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -c /<>/demos/tutorial/seed_and_extend/example3.cpp [ 44%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example4 -lrt -lz -lbz2 In file included from /<>/demos/tutorial/seed_and_extend/example3.cpp:2: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/seeds/seeds_extension.h:809:42: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TDatabasePrefix databasePrefix = prefix(database, beginPositionH(seed)); ^ /<>/demos/tutorial/seed_and_extend/example3.cpp:22:5: note: in instantiation of function template specialization 'seqan::extendSeed >, seqan::String >, int, seqan::Tag >' requested here extendSeed(seed, seqH, seqV, EXTEND_BOTH, scoringScheme, 3, ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target demo_tutorial_seed_and_extend_example4 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_reader_demo make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp [ 44%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_reader_demo cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/unassigned_or_unused/tutorials_custim_io/reader_demo.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_reader_demo -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target demo_unassigned_or_unused_tutorials_custim_io_reader_demo make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -c /<>/demos/tutorial/seed_and_extend/example1.cpp 1 warning generated. [ 44%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target demo_tutorial_seed_and_extend_example3 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sam_and_bam_io_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o -c /<>/demos/tutorial/sam_and_bam_io/solution3.cpp In file included from /<>/demos/tutorial/sam_and_bam_io/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 45%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target demo_tutorial_seed_and_extend_example1 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sam_and_bam_io_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o -c /<>/demos/tutorial/sam_and_bam_io/solution2.cpp In file included from /<>/demos/tutorial/sam_and_bam_io/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 45%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/tutorial/sam_and_bam_io/solution3.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target demo_tutorial_sam_and_bam_io_solution3 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o -c /<>/demos/tutorial/simple_rna_seq/base.cpp 4 warnings generated. [ 46%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/tutorial/sam_and_bam_io/solution2.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution2 -lrt -lz -lbz2 In file included from /<>/demos/tutorial/simple_rna_seq/base.cpp:1: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/base.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/base.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_sam_and_bam_io_solution2 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake --color= In file included from /<>/demos/tutorial/simple_rna_seq/base.cpp:1: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ Scanning dependencies of target demo_tutorial_sam_and_bam_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -c /<>/demos/tutorial/sam_and_bam_io/solution1.cpp 4 warnings generated. [ 46%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_simple_rna_seq_base make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sam_and_bam_io_example2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -c /<>/demos/tutorial/sam_and_bam_io/example2.cpp In file included from /<>/demos/tutorial/sam_and_bam_io/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example2.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example2.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example2.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example2.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 46%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_sam_and_bam_io_example2 make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_modifier_nested make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o -c /<>/demos/unassigned_or_unused/modifier_nested.cpp 4 warnings generated. [ 46%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_sam_and_bam_io_solution1 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sam_and_bam_io_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o -c /<>/demos/tutorial/sam_and_bam_io/example1.cpp [ 46%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_nested cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/unassigned_or_unused/modifier_nested.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_nested -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_unassigned_or_unused_modifier_nested make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sam_and_bam_io_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o -c /<>/demos/tutorial/sam_and_bam_io/base.cpp In file included from /<>/demos/tutorial/sam_and_bam_io/example1.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example1.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example1.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example1.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/base.cpp:2: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/base.cpp:2: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/base.cpp:2: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/base.cpp:2: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 46%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_sam_and_bam_io_base make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_realignment_step2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o -c /<>/demos/tutorial/realignment/step2.cpp In file included from /<>/demos/tutorial/realignment/step2.cpp:1: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/realignment/step2.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/realignment/step2.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/realignment/step2.cpp:1: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/realignment/step2.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/realignment/step2.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, refPath.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/realignment/step2.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/realignment/step2.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, refPath.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/realignment/step2.cpp:1: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/demos/tutorial/realignment/step2.cpp:21:5: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, /*contigID=*/ 0, /*method=*/ 1, /*bandwidth=*/ 20, ^ 4 warnings generated. [ 46%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/tutorial/sam_and_bam_io/example1.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_sam_and_bam_io_example1 make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_realignment_step1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o -c /<>/demos/tutorial/realignment/step1.cpp In file included from /<>/demos/tutorial/realignment/step1.cpp:1: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/realignment/step1.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/realignment/step1.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/realignment/step1.cpp:1: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/realignment/step1.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/realignment/step1.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, refPath.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/realignment/step1.cpp:1: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/realignment/step1.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, refPath.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 46%] Linking CXX executable ../bin/demo_tutorial_realignment_step1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_realignment_step1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o -o ../bin/demo_tutorial_realignment_step1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_realignment_step1 make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_q_gram_index_index_assignment6 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -c /<>/demos/tutorial/q_gram_index/index_assignment6.cpp 7 warnings generated. [ 47%] Linking CXX executable ../bin/demo_tutorial_realignment_step2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_realignment_step2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o -o ../bin/demo_tutorial_realignment_step2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_realignment_step2 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_find_exact make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -c /<>/demos/tutorial/pattern_matching/find_exact.cpp [ 47%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_assignment6 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_assignment6 -lrt -lz -lbz2 [ 47%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_exact cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_exact -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_pattern_matching_find_exact make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/depend [ 47%] Built target demo_tutorial_q_gram_index_index_assignment6 make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_file_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp Scanning dependencies of target demo_tutorial_alignment_scoring_scheme_matrix make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -c /<>/demos/tutorial/alignment/scoring_scheme_matrix.cpp In file included from /<>/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp:5: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp:62:14: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(stream, argv[2])) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp:5: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/demos/unassigned_or_unused/tutorial_file_io/solution1.cpp:62:14: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(stream, argv[2])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 2 warnings generated. [ 47%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_unassigned_or_unused_tutorial_file_io_solution1 make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_in_depth_example_overflow make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o -c /<>/demos/tutorial/sequences_in_depth/example_overflow.cpp [ 47%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_matrix cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_matrix -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_alignment_scoring_scheme_matrix make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_length_countSequences.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_length_countSequences make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -c /<>/demos/dox/index/length_countSequences.cpp [ 47%] Linking CXX executable ../bin/demo_tutorial_sequences_in_depth_example_overflow cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o -o ../bin/demo_tutorial_sequences_in_depth_example_overflow -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_sequences_in_depth_example_overflow make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_graph_graph_dijkstra make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -c /<>/demos/tutorial/graph/graph_dijkstra.cpp In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::Owner > >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::Owner > >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::Owner > >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::Owner > >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack >, seqan::Owner > >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ In file included from /<>/demos/dox/index/length_countSequences.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/length_countSequences.cpp:22:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here while (find(finder, "MISS")) ^ [ 47%] Linking CXX executable ../bin/demo_tutorial_graph_graph_dijkstra cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -o ../bin/demo_tutorial_graph_graph_dijkstra -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_graph_graph_dijkstra make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignment_align_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o -c /<>/demos/tutorial/alignment/align_assignment1.cpp [ 47%] Linking CXX executable ../bin/demo_tutorial_alignment_align_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o -o ../bin/demo_tutorial_alignment_align_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_alignment_align_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp [ 47%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_assignment3_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o -c /<>/demos/tutorial/pattern_matching/assignment3_solution.cpp 8 warnings generated. [ 47%] Linking CXX executable ../bin/demo_dox_index_length_countSequences cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_length_countSequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -o ../bin/demo_dox_index_length_countSequences -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_dox_index_length_countSequences make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_vcf_io_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o -c /<>/demos/tutorial/vcf_io/base.cpp In file included from /<>/demos/tutorial/pattern_matching/assignment3_solution.cpp:2: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_qgram.h:75:25: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexQGram, seqan::Tag > >, const seqan::Tag > >' requested here TIndex &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/assignment3_solution.cpp:12:12: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [5]>' requested here while (find(finder, "tobe")) ^ 1 warning generated. [ 47%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment3_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment3_solution -lrt -lz -lbz2 [ 47%] Linking CXX executable ../bin/demo_tutorial_vcf_io_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_base.dir/tutorial/vcf_io/base.cpp.o -o ../bin/demo_tutorial_vcf_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_pattern_matching_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_example_tempSubclassing make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o -c /<>/demos/tutorial/a_first_example/example_tempSubclassing.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_vcf_io_base make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph.dir/DependInfo.cmake --color= [ 48%] Linking CXX executable ../bin/demo_tutorial_a_first_example_example_tempSubclassing cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/tutorial/a_first_example/example_tempSubclassing.cpp.o -o ../bin/demo_tutorial_a_first_example_example_tempSubclassing -lrt -lz -lbz2 Scanning dependencies of target demo_tutorial_alignment_graph make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o -c /<>/demos/tutorial/alignment/graph.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target demo_tutorial_a_first_example_example_tempSubclassing make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_generic_programming_template_subclassing make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building CXX object demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -c /<>/demos/tutorial/generic_programming/template_subclassing.cpp [ 50%] Linking CXX executable ../bin/demo_tutorial_generic_programming_template_subclassing cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -o ../bin/demo_tutorial_generic_programming_template_subclassing -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_generic_programming_template_subclassing make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -c /<>/demos/tutorial/sequence_io/solution4.cpp In file included from /<>/demos/tutorial/sequence_io/solution4.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution4.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequence_io/solution4.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/solution4.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution4.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/sequence_io/solution4.cpp:10:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, toCString(seqFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/solution4.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, qual, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:387:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String > >' requested here readRecord(context(file).buffer[0], seqBuffer, context(file).buffer[2], file); ^ /<>/include/seqan/seq_io/sequence_file.h:409:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, qual, file, std::numeric_limits::max()); ^ /<>/demos/tutorial/sequence_io/solution4.cpp:22:9: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, void>' requested here readRecords(ids, seqs, quals, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 50%] Linking CXX executable ../bin/demo_tutorial_alignment_graph cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_graph.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o -o ../bin/demo_tutorial_alignment_graph -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_alignment_graph make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -c /<>/demos/tutorial/sequence_io/solution1.cpp 6 warnings generated. [ 50%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -o ../bin/demo_tutorial_sequence_io_solution4 -lrt -lz -lbz2 In file included from /<>/demos/tutorial/sequence_io/solution1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequence_io/solution1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_sequence_io_solution4 make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_multiple_sequence_alignment_msa make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -c /<>/demos/tutorial/multiple_sequence_alignment/msa.cpp In file included from /<>/demos/tutorial/sequence_io/solution1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/sequence_io/solution1.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn seqFileIn(toCString(seqFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/solution1.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/sequence_io/solution1.cpp:12:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(id, seq, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/multiple_sequence_alignment/msa.cpp:3: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent >, unsigned long, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:482:9: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, g, FractionalScore()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:568:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, seqan::String >, seqan::Alloc >, seqan::SimpleType, seqan::Score, seqan::Blosum62_> > >' requested here globalMsaAlignment(gAlign, sequenceSet, sequenceNames, msaOpt); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:578:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::Score, seqan::Blosum62_> > >' requested here globalMsaAlignment(gAlign, scoreObject); ^ /<>/demos/tutorial/multiple_sequence_alignment/msa.cpp:31:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Tag, seqan::Score, seqan::Blosum62_> > >' requested here globalMsaAlignment(align, Blosum62(-1, -11)); ^ In file included from /<>/demos/tutorial/multiple_sequence_alignment/msa.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' first required here for(TSize i = 0; i>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:5: note: in instantiation of function template specialization 'seqan::convertAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here convertAlignment(gAlign, align); ^ /<>/demos/tutorial/multiple_sequence_alignment/msa.cpp:31:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Tag, seqan::Score, seqan::Blosum62_> > >' requested here globalMsaAlignment(align, Blosum62(-1, -11)); ^ 6 warnings generated. [ 50%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -o ../bin/demo_tutorial_sequence_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_sequence_io_solution1 make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_filter_similar_sequences make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -c /<>/demos/howto/filter_similar_sequences.cpp In file included from /<>/demos/howto/filter_similar_sequences.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/howto/filter_similar_sequences.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/howto/filter_similar_sequences.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/howto/filter_similar_sequences.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/howto/filter_similar_sequences.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:1261:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileName))) ^ /<>/demos/howto/filter_similar_sequences.cpp:14:22: note: in instantiation of function template specialization 'seqan::loadReads, const char *>' requested here if (argc < 2 || !loadReads(fragStore, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/howto/filter_similar_sequences.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/include/seqan/store/store_io.h:1264:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void>' requested here readRecords(store.readNameStore, store.readSeqStore, seqFile); ^ /<>/demos/howto/filter_similar_sequences.cpp:14:22: note: in instantiation of function template specialization 'seqan::loadReads, const char *>' requested here if (argc < 2 || !loadReads(fragStore, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/howto/filter_similar_sequences.cpp:3: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: in instantiation of function template specialization 'seqan::host, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >, seqan::Swift >' requested here TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/index/find_swift.h:1929:9: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >, double, int, seqan::Tag > >' requested here _patternInit(pattern, errorRate, minLength); ^ /<>/include/seqan/index/find_swift.h:1913:12: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::InfixSegment>, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >, seqan::Tag >, int>' requested here return find(finder, pattern, errorRate, 0); ^ /<>/demos/howto/filter_similar_sequences.cpp:35:16: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::InfixSegment>, seqan::Swift >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >, void>' requested here while (find(finder, pattern, 0.1)) ^ 7 warnings generated. [ 50%] Linking CXX executable ../bin/demo_howto_filter_similar_sequences cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_filter_similar_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -o ../bin/demo_howto_filter_similar_sequences -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_howto_filter_similar_sequences make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_string_tree_journaled_string_tree_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -c /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 2 warnings generated. [ 50%] Linking CXX executable ../bin/demo_tutorial_multiple_sequence_alignment_msa cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -o ../bin/demo_tutorial_multiple_sequence_alignment_msa -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_multiple_sequence_alignment_msa make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_basic_code make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -c /<>/demos/tutorial/a_first_example/basic_code.cpp In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: note: in implicit copy constructor for 'seqan::String > >' first required here class DeltaMapEntry ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit move constructor for 'seqan::DeltaMapEntry' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct *, seqan::DeltaMapEntry >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct *, seqan::DeltaMapEntry >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault *, seqan::DeltaMapEntry *, seqan::DeltaMapEntry *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1697:5: note: in instantiation of function template specialization 'seqan::_reserveStorage, seqan::Alloc, int, seqan::TagGenerous_>' requested here _reserveStorage(seq, new_capacity, tag); ^ /<>/include/seqan/sequence/sequence_interface.h:1136:12: note: in instantiation of function template specialization 'seqan::reserve, seqan::Alloc, int, seqan::TagGenerous_>' requested here return reserve(std::forward(me), new_capacity, typename DefaultOverflowExplicit::Type()); ^ /<>/include/seqan/journaled_string_tree/delta_map.h:795:9: note: in instantiation of function template specialization 'seqan::reserve, seqan::Alloc > &, int>' requested here reserve(deltaMap._entries, 1); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:5: note: in instantiation of function template specialization 'seqan::insert, seqan::Alloc > >, seqan::Tag, int, int, seqan::String > >, seqan::Tag >' requested here insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); ^ /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:42:5: note: in instantiation of function template specialization 'seqan::insert, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag, int, int, std::vector >, seqan::Tag >' requested here insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: In file included from /<>/include/seqan/stream.h:61: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: in instantiation of function template specialization 'seqan::impl::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Tag > > > &>, seqan::SelectValidProxy_>' requested here impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:282:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Tag > > > &>, seqan::SelectValidProxy_>' requested here init(traverser, observer, TProxySelector()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:306:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &, std::tuple, seqan::Alloc >, seqan::Tag > > > &> >' requested here find(traverser, algorithm, delegate, observer); ^ /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:5: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &>' requested here find(trav, ext, delegate); ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: In file included from /<>/include/seqan/stream.h:61: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: in instantiation of function template specialization 'seqan::impl::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Tag > > > &>, seqan::SelectValidProxy_>' requested here impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:282:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Tag > > > &>, seqan::SelectValidProxy_>' requested here init(traverser, observer, TProxySelector()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:306:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &, std::tuple, seqan::Alloc >, seqan::Tag > > > &> >' requested here find(traverser, algorithm, delegate, observer); ^ /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:60:5: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Tag > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &>' requested here find(trav, ext, delegate); ^ [ 50%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_a_first_example_basic_code make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_efficiently_import_sequences make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -c /<>/demos/howto/efficiently_import_sequences.cpp 7 warnings generated. [ 50%] Linking CXX executable ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -o ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_final_result make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -c /<>/demos/tutorial/a_first_example/final_result.cpp In file included from /<>/demos/howto/efficiently_import_sequences.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/howto/efficiently_import_sequences.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/howto/efficiently_import_sequences.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/howto/efficiently_import_sequences.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/howto/efficiently_import_sequences.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/howto/efficiently_import_sequences.cpp:15:22: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (argc < 2 || !open(seqFile, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/howto/efficiently_import_sequences.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 11 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, qual, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/demos/howto/efficiently_import_sequences.cpp:29:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String > >' requested here readRecord(id, seq, qual, seqFile); // read record ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 50%] Linking CXX executable ../bin/demo_tutorial_a_first_example_final_result cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_final_result.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -o ../bin/demo_tutorial_a_first_example_final_result -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_a_first_example_final_result make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_bed_io_UNUSED_bed_stream_read make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -c /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp In file included from /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, argv[1])) ^ In file included from /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bed_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, argv[1])) ^ 6 warnings generated. [ 50%] Linking CXX executable ../bin/demo_howto_efficiently_import_sequences cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_efficiently_import_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -o ../bin/demo_howto_efficiently_import_sequences -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_howto_efficiently_import_sequences make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_scores_load_score make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -c /<>/demos/howto/scores/load_score.cpp 5 warnings generated. [ 50%] Linking CXX executable ../bin/demo_dox_bed_io_UNUSED_bed_stream_read cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -o ../bin/demo_dox_bed_io_UNUSED_bed_stream_read -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_dox_bed_io_UNUSED_bed_stream_read make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_example_functionality1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -c /<>/demos/tutorial/sequences/example_functionality1.cpp In file included from /<>/demos/howto/scores/load_score.cpp:27: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/score/score_matrix_io.h:179:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(fin, toCString(filename))) ^ /<>/demos/howto/scores/load_score.cpp:61:5: note: in instantiation of function template specialization 'seqan::loadScoreMatrix, seqan::Tag >' requested here loadScoreMatrix(scoreMatrix, toCString(getAbsolutePath("demos/howto/scores/dna_example.txt"))); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/howto/scores/load_score.cpp:27: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/score/score_matrix_io.h:179:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(fin, toCString(filename))) ^ /<>/demos/howto/scores/load_score.cpp:61:5: note: in instantiation of function template specialization 'seqan::loadScoreMatrix, seqan::Tag >' requested here loadScoreMatrix(scoreMatrix, toCString(getAbsolutePath("demos/howto/scores/dna_example.txt"))); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequences/example_functionality1.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequences/example_functionality1.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequences/example_functionality1.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequences/example_functionality1.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 2 warnings generated. [ 50%] Linking CXX executable ../bin/demo_howto_scores_load_score cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_load_score.dir/link.txt --verbose=1 4 warnings generated. /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -o ../bin/demo_howto_scores_load_score -lrt -lz -lbz2 [ 50%] Linking CXX executable ../bin/demo_tutorial_sequences_example_functionality1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -o ../bin/demo_tutorial_sequences_example_functionality1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_sequences_example_functionality1 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/depend [ 50%] Built target demo_howto_scores_load_score make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_assignment_3_workshop make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build Scanning dependencies of target demo_tutorial_gff_and_gtf_io_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o -c /<>/demos/tutorial/iterators/assignment_3_workshop.cpp [ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o -c /<>/demos/tutorial/gff_and_gtf_io/solution3.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_3_workshop cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o -o ../bin/demo_tutorial_iterators_assignment_3_workshop -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_iterators_assignment_3_workshop make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_UNUSED_modcomplementdna make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -c /<>/demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_gff_and_gtf_io_solution3 make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_string2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -c /<>/demos/dox/sequence/string2.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -o ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_UNUSED_prefix make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o -c /<>/demos/dox/sequence/UNUSED_prefix.cpp [ 51%] Linking CXX executable ../bin/demo_dox_sequence_string2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -o ../bin/demo_dox_sequence_string2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_dox_sequence_string2 make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_statistics_build_markov_model make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' In file included from /<>/demos/dox/sequence/UNUSED_prefix.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/demos/dox/sequence/UNUSED_prefix.cpp:11:37: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, int>' requested here Infix >::Type pre = prefix(dnaSeq, 4); ^ [ 51%] Building CXX object demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -c /<>/demos/dox/statistics/build_markov_model.cpp 1 warning generated. [ 51%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_prefix cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_prefix -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_dox_sequence_UNUSED_prefix make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_assignment5_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/assignment5_solution.cpp In file included from /<>/demos/dox/statistics/build_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/statistics/build_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/statistics/build_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/statistics/build_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/statistics/build_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/dox/statistics/build_markov_model.cpp:18:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(bgPath))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/statistics/build_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/demos/dox/statistics/build_markov_model.cpp:24:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void>' requested here readRecords(ids, X, seqFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 51%] Linking CXX executable ../bin/demo_dox_statistics_build_markov_model cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_statistics_build_markov_model.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -o ../bin/demo_dox_statistics_build_markov_model -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_dox_statistics_build_markov_model make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_seeds_seeds_extension make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -c /<>/demos/dox/seeds/seeds_extension.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -c /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp In file included from /<>/demos/dox/seeds/seeds_extension.cpp:3: In file included from /<>/include/seqan/seeds.h:49: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/seeds/seeds_extension.h:809:42: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TDatabasePrefix databasePrefix = prefix(database, beginPositionH(seed)); ^ /<>/demos/dox/seeds/seeds_extension.cpp:24:5: note: in instantiation of function template specialization 'seqan::extendSeed >, seqan::String >, int, seqan::Tag >' requested here extendSeed(seed3, a, b, EXTEND_BOTH, scoring, 2, GappedXDrop()); ^ 1 warning generated. [ 51%] Linking CXX executable ../bin/demo_dox_seeds_seeds_extension cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_extension.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -o ../bin/demo_dox_seeds_seeds_extension -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_dox_seeds_seeds_extension make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:177:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn databaseFile(toCString(seqDatabasePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 51%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn -lrt -lz -lbz2 In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:151:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(seqId, sequence, databaseFile); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:182:5: note: in instantiation of function template specialization 'loadAndJoin, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::GlobalAlign > >' requested here loadAndJoin(journalSet, databaseFile, joinConfig); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_seeds_seeds_add_seed make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o -c /<>/demos/dox/seeds/seeds_add_seed.cpp [ 51%] Linking CXX executable ../bin/demo_dox_seeds_seeds_add_seed cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/dox/seeds/seeds_add_seed.cpp.o -o ../bin/demo_dox_seeds_seeds_add_seed -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_dox_seeds_seeds_add_seed make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_solution_3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o -c /<>/demos/tutorial/a_first_example/solution_3.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_a_first_example_solution_3 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -c /<>/demos/tutorial/seed_and_extend/solution3.cpp In file included from /<>/demos/tutorial/seed_and_extend/solution3.cpp:1: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/seeds/seeds_extension.h:809:42: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TDatabasePrefix databasePrefix = prefix(database, beginPositionH(seed)); ^ /<>/demos/tutorial/seed_and_extend/solution3.cpp:19:5: note: in instantiation of function template specialization 'seqan::extendSeed >, seqan::String >, int, seqan::Tag >' requested here extendSeed(seed, seqH, seqV, EXTEND_BOTH, scoringScheme, 3, ^ 6 warnings generated. [ 51%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basics_show_alphabets make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -c /<>/demos/tutorial/basics/show_alphabets.cpp [ 51%] Linking CXX executable ../bin/demo_tutorial_basics_show_alphabets cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_show_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -o ../bin/demo_tutorial_basics_show_alphabets -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_basics_show_alphabets make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_stringset make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Building CXX object demos/CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o -c /<>/demos/dox/sequence/stringset.cpp 1 warning generated. [ 52%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target demo_tutorial_seed_and_extend_solution3 make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_container_view_zip make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 52%] Building CXX object demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o -c /<>/demos/dox/sequence/container_view_zip.cpp [ 52%] Linking CXX executable ../bin/demo_dox_sequence_stringset cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_stringset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o -o ../bin/demo_dox_sequence_stringset -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target demo_dox_sequence_stringset make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_pipe_pool_sorter make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o -c /<>/demos/dox/pipe/pool_sorter.cpp In file included from /<>/demos/dox/sequence/container_view_zip.cpp:3: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, int *>::_M_assign >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, int *>' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, int *>::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >, seqan::ZipContainer >::ContainerView >, seqan::Owner > > &, seqan::StringSet >, seqan::Owner > > &, seqan::String > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/demos/dox/sequence/container_view_zip.cpp:26:22: note: in instantiation of function template specialization 'seqan::makeZipView >, seqan::Owner > > &, seqan::StringSet >, seqan::Owner > > &, seqan::String > &>' requested here auto pRegister = makeZipView(names, surnames, ages); ^ In file included from /<>/demos/dox/sequence/container_view_zip.cpp:3: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:308:19: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here _M_head(*this) = std::forward<_UHead> ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/tuple:832:8: note: in instantiation of function template specialization 'std::_Tuple_impl<0, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, int *>::_M_assign >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, int *>' requested here this->_M_assign(std::move(__in)); ^ /<>/include/seqan/basic/iterator_base.h:66:7: note: in instantiation of member function 'std::tuple >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, int *>::operator=' requested here class Iter; ^ /<>/include/seqan/sequence/container_view_zip.h:290:12: note: in instantiation of function template specialization 'seqan::ContainerView >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String > >, seqan::ZipContainer >::ContainerView >, seqan::Owner > > &, seqan::StringSet >, seqan::Owner > > &, seqan::String > &>' requested here return ContainerView::type...>, ZipContainer<> >(std::forward(contArgs)...); ^ /<>/demos/dox/sequence/container_view_zip.cpp:26:22: note: in instantiation of function template specialization 'seqan::makeZipView >, seqan::Owner > > &, seqan::StringSet >, seqan::Owner > > &, seqan::String > &>' requested here auto pRegister = makeZipView(names, surnames, ages); ^ 2 warnings generated. [ 53%] Linking CXX executable ../bin/demo_dox_sequence_container_view_zip cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_container_view_zip.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o -o ../bin/demo_dox_sequence_container_view_zip -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 53%] Built target demo_dox_sequence_container_view_zip make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_parallel_queue_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_parallel_queue_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o -c /<>/demos/dox/parallel/queue_example.cpp [ 53%] Linking CXX executable ../bin/demo_dox_pipe_pool_sorter cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_pipe_pool_sorter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_pipe_pool_sorter.dir/dox/pipe/pool_sorter.cpp.o -o ../bin/demo_dox_pipe_pool_sorter -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 53%] Built target demo_dox_pipe_pool_sorter make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o -c /<>/demos/tutorial/a_first_example/base.cpp [ 54%] Linking CXX executable ../bin/demo_dox_parallel_queue_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_parallel_queue_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o -o ../bin/demo_dox_parallel_queue_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target demo_dox_parallel_queue_example make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_modifier_modified_string_mod_view make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o -c /<>/demos/dox/modifier/modified_string_mod_view.cpp [ 54%] Linking CXX executable ../bin/demo_dox_modifier_modified_string_mod_view cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/dox/modifier/modified_string_mod_view.cpp.o -o ../bin/demo_dox_modifier_modified_string_mod_view -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target demo_dox_modifier_modified_string_mod_view make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_modifier_modified_string make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o -c /<>/demos/dox/modifier/modified_string.cpp In file included from /<>/demos/tutorial/a_first_example/base.cpp:2: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:21: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here finger1 = col_; ^ /<>/include/seqan/align/global_alignment_specialized.h:95:12: note: in instantiation of function template specialization 'seqan::_globalAlignment, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return _globalAlignment(row(align, 0), row(align, 1), algorithmTag); ^ /<>/demos/tutorial/a_first_example/base.cpp:22:5: note: in instantiation of function template specialization 'seqan::globalAlignment, seqan::Alloc >, seqan::Tag >' requested here globalAlignment(align, seqan::MyersHirschberg()); ^ In file included from /<>/demos/tutorial/a_first_example/base.cpp:2: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:21: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here finger1 = col_; ^ /<>/include/seqan/align/global_alignment_specialized.h:95:12: note: in instantiation of function template specialization 'seqan::_globalAlignment, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return _globalAlignment(row(align, 0), row(align, 1), algorithmTag); ^ /<>/demos/tutorial/a_first_example/base.cpp:22:5: note: in instantiation of function template specialization 'seqan::globalAlignment, seqan::Alloc >, seqan::Tag >' requested here globalAlignment(align, seqan::MyersHirschberg()); ^ 2 warnings generated. [ 54%] Linking CXX executable ../bin/demo_tutorial_a_first_example_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o -o ../bin/demo_tutorial_a_first_example_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target demo_tutorial_a_first_example_base make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_modifier_cyclic_shape_snippets make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o -c /<>/demos/dox/modifier/cyclic_shape_snippets.cpp [ 55%] Linking CXX executable ../bin/demo_dox_modifier_modified_string cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o -o ../bin/demo_dox_modifier_modified_string -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target demo_dox_modifier_modified_string make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example7 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -c /<>/demos/tutorial/seed_and_extend/example7.cpp In file included from /<>/demos/dox/modifier/cyclic_shape_snippets.cpp:9: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: /<>/include/seqan/modifier/cyclic_shape.h:288:5: warning: definition of implicit copy assignment operator for 'CyclicShape >, 1> >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] CyclicShape(CyclicShape const &) ^ /<>/include/seqan/modifier/modifier_string.h:452:15: note: in implicit copy assignment operator for 'seqan::CyclicShape >, 1> >' first required here cargo(me) = cargo(_origin); ^ /<>/include/seqan/modifier/modifier_string.h:458:5: note: in instantiation of function template specialization 'seqan::_copyCargoImpl >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 1> > > >, const seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > > >' requested here _copyCargoImpl(me, _origin, typename IsSameType< ^ /<>/include/seqan/modifier/modifier_cyclic_shape.h:371:5: note: in instantiation of function template specialization 'seqan::_copyCargo >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 1> > > >, const seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > > >' requested here _copyCargo(tmp, me); ^ /<>/include/seqan/stream/iter_stream.h:515:12: note: in instantiation of function template specialization 'seqan::begin >, seqan::FixedShape<2, seqan::GappedShape >, 1>, seqan::Rooted_>' requested here return begin(cont, Rooted()); ^ /<>/include/seqan/basic/basic_stream.h:1085:70: note: in instantiation of function template specialization 'seqan::directionIterator >, seqan::ModCyclicShape >, 1> > > >, seqan::Tag >' requested here typename DirectionIterator::Type iter = directionIterator(cont, Input()); ^ /<>/include/seqan/modifier/modifier_string.h:801:5: note: in instantiation of function template specialization 'seqan::write, seqan::StreamIterator > >, seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > > >' requested here write(it, source); ^ /<>/demos/dox/modifier/cyclic_shape_snippets.cpp:32:36: note: in instantiation of function template specialization 'seqan::operator<<, seqan::String >, seqan::ModCyclicShape >, 1> > > >' requested here std::cout << str << " => " << modStr << std::endl; ^ In file included from /<>/demos/dox/modifier/cyclic_shape_snippets.cpp:9: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:59: In file included from /<>/include/seqan/modifier.h:68: /<>/include/seqan/modifier/cyclic_shape.h:203:5: warning: definition of implicit copy assignment operator for 'CyclicShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] CyclicShape(CyclicShape const & other) : ^ /<>/include/seqan/modifier/modifier_string.h:452:15: note: in implicit copy assignment operator for 'seqan::CyclicShape' first required here cargo(me) = cargo(_origin); ^ /<>/include/seqan/modifier/modifier_string.h:458:5: note: in instantiation of function template specialization 'seqan::_copyCargoImpl >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > >, const seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here _copyCargoImpl(me, _origin, typename IsSameType< ^ /<>/include/seqan/modifier/modifier_cyclic_shape.h:371:5: note: in instantiation of function template specialization 'seqan::_copyCargo >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > >, const seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here _copyCargo(tmp, me); ^ /<>/include/seqan/stream/iter_stream.h:515:12: note: in instantiation of function template specialization 'seqan::begin >, seqan::GappedShape >, seqan::Rooted_>' requested here return begin(cont, Rooted()); ^ /<>/include/seqan/basic/basic_stream.h:1085:70: note: in instantiation of function template specialization 'seqan::directionIterator >, seqan::ModCyclicShape > >, seqan::Tag >' requested here typename DirectionIterator::Type iter = directionIterator(cont, Input()); ^ /<>/include/seqan/modifier/modifier_string.h:801:5: note: in instantiation of function template specialization 'seqan::write, seqan::StreamIterator > >, seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here write(it, source); ^ /<>/demos/dox/modifier/cyclic_shape_snippets.cpp:51:36: note: in instantiation of function template specialization 'seqan::operator<<, seqan::String >, seqan::ModCyclicShape > >' requested here std::cout << str << " => " << modStr << std::endl; ^ 2 warnings generated. [ 55%] Linking CXX executable ../bin/demo_dox_modifier_cyclic_shape_snippets cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o -o ../bin/demo_dox_modifier_cyclic_shape_snippets -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target demo_dox_modifier_cyclic_shape_snippets make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_align_graph_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -c /<>/demos/dox/graph_align/graph_align.cpp [ 55%] Linking CXX executable ../bin/demo_dox_graph_align_graph_align cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_align_graph_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -o ../bin/demo_dox_graph_align_graph_align -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target demo_dox_graph_align_graph_align make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_supermaxrepeats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -c /<>/demos/dox/index/supermaxrepeats.cpp In file included from /<>/demos/dox/index/supermaxrepeats.cpp:4: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_algs.h:120:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/supermaxrepeats.cpp:19:47: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myRepeatIterator(myIndex, 3); ^ 1 warning generated. [ 56%] Linking CXX executable ../bin/demo_dox_index_supermaxrepeats cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_supermaxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -o ../bin/demo_dox_index_supermaxrepeats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_dox_index_supermaxrepeats make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_gff_and_gtf_io_example2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -c /<>/demos/tutorial/gff_and_gtf_io/example2.cpp In file included from /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:2: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:2: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example2.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ 6 warnings generated. [ 56%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_tutorial_gff_and_gtf_io_example2 make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_soft_to_hard_masking make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o -c /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp [ 56%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example7 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example7 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_tutorial_seed_and_extend_example7 make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_consensus_consensus_alignment make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -c /<>/demos/dox/consensus/consensus_alignment.cpp In file included from /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:44: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:45: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:45: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:44: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:45: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:52:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn inFile(filename); ^ /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:82:9: note: in instantiation of function template specialization 'convertToHardMasked >' requested here convertToHardMasked(std::cout, argv[i]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:45: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:62:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(meta, seq, inFile); ^ /<>/demos/unassigned_or_unused/soft_to_hard_masking.cpp:82:9: note: in instantiation of function template specialization 'convertToHardMasked >' requested here convertToHardMasked(std::cout, argv[i]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:42: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:42: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:42: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:42: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/find_pigeonhole.h:518:35: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here indexShape(host(pattern)) = pattern.shape; ^ /<>/include/seqan/consensus/overlap_info_computation.h:370:5: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, double, void>' requested here _patternInit(filterPattern, maxErrorRate); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/dox/consensus/consensus_alignment.cpp:46:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_pigeonhole.h:463:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/dox/consensus/consensus_alignment.cpp:46:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:46: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); ^ /<>/include/seqan/consensus/consensus_builder.h:384:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag, seqan::Score > >' requested here buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); ^ /<>/include/seqan/consensus/consensus_aligner.h:170:17: note: in instantiation of member function 'seqan::ConsensusBuilder_ > >::run' requested here consBuilder.run(store, overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/dox/consensus/consensus_alignment.cpp:46:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/dox/consensus/consensus_alignment.cpp:3: In file included from /<>/include/seqan/consensus.h:42: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:145:13: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); ^ /<>/demos/dox/consensus/consensus_alignment.cpp:46:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ 6 warnings generated. [ 56%] Linking CXX executable ../bin/demo_unassigned_or_unused_soft_to_hard_masking cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o -o ../bin/demo_unassigned_or_unused_soft_to_hard_masking -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_unassigned_or_unused_soft_to_hard_masking make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_gff_and_gtf_io_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -c /<>/demos/tutorial/gff_and_gtf_io/example1.cpp In file included from /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:2: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:2: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/gff_and_gtf_io/example1.cpp:12:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(toCString(file)); ^ 6 warnings generated. [ 56%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_tutorial_gff_and_gtf_io_example1 make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_modifier_cyclic_shape make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -c /<>/demos/dox/modifier/cyclic_shape.cpp In file included from /<>/demos/dox/modifier/cyclic_shape.cpp:1: In file included from /<>/include/seqan/modifier.h:68: /<>/include/seqan/modifier/cyclic_shape.h:203:5: warning: definition of implicit copy assignment operator for 'CyclicShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] CyclicShape(CyclicShape const & other) : ^ /<>/include/seqan/modifier/modifier_string.h:452:15: note: in implicit copy assignment operator for 'seqan::CyclicShape' first required here cargo(me) = cargo(_origin); ^ /<>/include/seqan/modifier/modifier_string.h:458:5: note: in instantiation of function template specialization 'seqan::_copyCargoImpl >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > >, const seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here _copyCargoImpl(me, _origin, typename IsSameType< ^ /<>/include/seqan/modifier/modifier_cyclic_shape.h:371:5: note: in instantiation of function template specialization 'seqan::_copyCargo >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > >, const seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here _copyCargo(tmp, me); ^ /<>/include/seqan/stream/iter_stream.h:515:12: note: in instantiation of function template specialization 'seqan::begin >, seqan::GappedShape >, seqan::Rooted_>' requested here return begin(cont, Rooted()); ^ /<>/include/seqan/basic/basic_stream.h:1085:70: note: in instantiation of function template specialization 'seqan::directionIterator >, seqan::ModCyclicShape > >, seqan::Tag >' requested here typename DirectionIterator::Type iter = directionIterator(cont, Input()); ^ /<>/include/seqan/modifier/modifier_string.h:801:5: note: in instantiation of function template specialization 'seqan::write, seqan::StreamIterator > >, seqan::ModifiedString >, seqan::ModCyclicShape > > >' requested here write(it, source); ^ /<>/demos/dox/modifier/cyclic_shape.cpp:27:32: note: in instantiation of function template specialization 'seqan::operator<<, seqan::String >, seqan::ModCyclicShape > >' requested here std::cout << str << " => " << modStr << std::endl; ^ 1 warning generated. [ 56%] Linking CXX executable ../bin/demo_dox_modifier_cyclic_shape cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_cyclic_shape.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -o ../bin/demo_dox_modifier_cyclic_shape -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_dox_modifier_cyclic_shape make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_example_functionality make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o -c /<>/demos/tutorial/string_sets/example_functionality.cpp [ 56%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_functionality cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o -o ../bin/demo_tutorial_string_sets_example_functionality -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_tutorial_string_sets_example_functionality make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_misc_enumerate_strings make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o -c /<>/demos/dox/misc/enumerate_strings.cpp [ 56%] Linking CXX executable ../bin/demo_dox_misc_enumerate_strings cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_enumerate_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o -o ../bin/demo_dox_misc_enumerate_strings -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_dox_misc_enumerate_strings make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_stream_lexical_cast make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o -c /<>/demos/dox/stream/lexical_cast.cpp [ 56%] Linking CXX executable ../bin/demo_dox_stream_lexical_cast cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_stream_lexical_cast.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o -o ../bin/demo_dox_stream_lexical_cast -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_dox_stream_lexical_cast make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_index_preorder make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o -c /<>/demos/tutorial/index_iterators/index_preorder.cpp In file included from /<>/demos/tutorial/index_iterators/index_preorder.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_preorder.cpp:17:64: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ 1 warning generated. [ 57%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_preorder cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o -o ../bin/demo_tutorial_index_iterators_index_preorder -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target demo_tutorial_index_iterators_index_preorder make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_graph_graph_algo_scc make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -c /<>/demos/tutorial/graph/graph_algo_scc.cpp 8 warnings generated. [ 57%] Linking CXX executable ../bin/demo_dox_consensus_consensus_alignment cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_consensus_consensus_alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -o ../bin/demo_dox_consensus_consensus_alignment -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 57%] Built target demo_dox_consensus_consensus_alignment make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp [ 58%] Linking CXX executable ../bin/demo_tutorial_graph_graph_algo_scc cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -o ../bin/demo_tutorial_graph_graph_algo_scc -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 58%] Built target demo_tutorial_graph_graph_algo_scc make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignment_scoring_scheme_affine_dgs make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 58%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -c /<>/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:60:58: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here Iterator >::Type it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:40:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:40:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:46:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1562:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1532:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, long, unsigned int>' requested here findIntervals(result, g, pm, act_knot, query_begin, query_end); ^ /<>/include/seqan/misc/interval_tree.h:1513:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, long, unsigned int>' requested here findIntervals(result, tree.g, tree.pm, query_begin, query_end); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp:113:9: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(result, intervalTrees[ar.contigId], queryBegin, queryEnd); ^ [ 59%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_solution_5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 60%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o -c /<>/demos/tutorial/a_first_example/solution_5.cpp [ 60%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/tutorial/a_first_example/solution_5.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 60%] Built target demo_tutorial_a_first_example_solution_5 make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_parallel_splitter_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 60%] Building CXX object demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o -c /<>/demos/dox/parallel/splitter_example.cpp [ 60%] Linking CXX executable ../bin/demo_dox_parallel_splitter_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_parallel_splitter_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o -o ../bin/demo_dox_parallel_splitter_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 60%] Built target demo_dox_parallel_splitter_example make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_UNUSED_infix make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 60%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -c /<>/demos/dox/sequence/UNUSED_infix.cpp [ 61%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_infix cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_infix -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_sequence_UNUSED_infix make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basics_allocator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -c /<>/demos/tutorial/basics/allocator.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_basics_allocator cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_allocator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -o ../bin/demo_tutorial_basics_allocator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_basics_allocator make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_shape_hash_init make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o -c /<>/demos/dox/index/shape_hash_init.cpp 9 warnings generated. [ 61%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_simple_rna_seq_genequant_assignment5 make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indexed_fasta_io_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -c /<>/demos/tutorial/indexed_fasta_io/solution2.cpp [ 61%] Linking CXX executable ../bin/demo_dox_index_shape_hash_init cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_shape_hash_init.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o -o ../bin/demo_dox_index_shape_hash_init -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_index_shape_hash_init make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_seq_io_fai_index_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -c /<>/demos/dox/seq_io/fai_index_example.cpp In file included from /<>/demos/tutorial/indexed_fasta_io/solution2.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/indexed_fasta_io/solution2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/indexed_fasta_io/solution2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/indexed_fasta_io/solution2.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/seq_io/fai_index_example.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/seq_io/fai_index_example.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/seq_io/fai_index_example.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/seq_io/fai_index_example.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 61%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_indexed_fasta_io_solution2 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp 4 warnings generated. [ 61%] Linking CXX executable ../bin/demo_dox_seq_io_fai_index_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seq_io_fai_index_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -o ../bin/demo_dox_seq_io_fai_index_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_seq_io_fai_index_example make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_seeds make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -c /<>/demos/unassigned_or_unused/seeds.cpp In file included from /<>/demos/unassigned_or_unused/seeds.cpp:3: In file included from /<>/include/seqan/seeds.h:49: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/seeds/seeds_extension.h:809:42: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here TDatabasePrefix databasePrefix = prefix(database, beginPositionH(seed)); ^ /<>/demos/unassigned_or_unused/seeds.cpp:25:5: note: in instantiation of function template specialization 'seqan::extendSeed >, seqan::String >, int, seqan::Tag >' requested here extendSeed(seed3, a, b, EXTEND_BOTH, scoring, 2, GappedXDrop()); ^ In file included from /<>/demos/unassigned_or_unused/seeds.cpp:3: In file included from /<>/include/seqan/seeds.h:49: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap *, long, seqan::Triple, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop *, long, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4867:12: note: in instantiation of function template specialization 'std::__sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ^ /<>/include/seqan/seeds/seeds_global_chaining.h:170:10: note: in instantiation of function template specialization 'std::sort *>' requested here std::sort(begin(intervalPoints, Standard()), end(intervalPoints, Standard())); ^ /<>/demos/unassigned_or_unused/seeds.cpp:37:5: note: in instantiation of function template specialization 'seqan::chainSeedsGlobally, seqan::DefaultSeedConfig>, seqan::Alloc >, seqan::Seed, seqan::DefaultSeedConfig>, seqan::Tag >' requested here chainSeedsGlobally(chain, seedSet, SparseChaining()); ^ 2 warnings generated. [ 61%] Linking CXX executable ../bin/demo_unassigned_or_unused_seeds cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_seeds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -o ../bin/demo_unassigned_or_unused_seeds -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_unassigned_or_unused_seeds make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -c /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_node_predicate make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -c /<>/demos/dox/index/node_predicate.cpp In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:36:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(annotationFile, toCString(annotationFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:42:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, annotationFile); ^ [ 61%] Linking CXX executable ../bin/demo_dox_index_node_predicate cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_node_predicate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -o ../bin/demo_dox_index_node_predicate -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_index_node_predicate make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_assignment_3_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -c /<>/demos/tutorial/sequences/assignment_3_solution.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_sequences_assignment_3_solution make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_mums make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -c /<>/demos/dox/index/mums.cpp In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ In file included from /<>/demos/dox/index/mums.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin >, seqan::Owner > >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mums.cpp:21:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myMUMiterator(myIndex, 3); ^ 7 warnings generated. [ 61%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_bed_io_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -c /<>/demos/tutorial/bed_io/example1.cpp In file included from /<>/demos/tutorial/bed_io/example1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/bed_io/example1.cpp:7:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here BedFileIn bedIn(toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))); ^ In file included from /<>/demos/tutorial/bed_io/example1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/bed_io/example1.cpp:7:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here BedFileIn bedIn(toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/bed_io/example1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/bed_io/example1.cpp:7:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here BedFileIn bedIn(toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/bed_io/example1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bed_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/bed_io/example1.cpp:7:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here BedFileIn bedIn(toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/bed_io/example1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/bed_io/example1.cpp:7:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here BedFileIn bedIn(toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed"))); ^ 5 warnings generated. [ 61%] Linking CXX executable ../bin/demo_tutorial_bed_io_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -o ../bin/demo_tutorial_bed_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_bed_io_example1 make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_file_io_overview_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -c /<>/demos/tutorial/file_io_overview/solution1.cpp In file included from /<>/demos/tutorial/file_io_overview/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/file_io_overview/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/file_io_overview/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/file_io_overview/solution1.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 8 warnings generated. [ 61%] Linking CXX executable ../bin/demo_dox_index_mums cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_mums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -o ../bin/demo_dox_index_mums -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_index_mums make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_basic_code_detailed make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -c /<>/demos/tutorial/a_first_example/basic_code_detailed.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code_detailed cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code_detailed -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_a_first_example_basic_code_detailed make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_final_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/final_solution.cpp 4 warnings generated. [ 61%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_file_io_overview_solution1 make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_all_pairs_shortest_path make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -c /<>/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp [ 61%] Linking CXX executable ../bin/demo_dox_graph_algorithms_all_pairs_shortest_path cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -o ../bin/demo_dox_graph_algorithms_all_pairs_shortest_path -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_enable_if.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_basic_enable_if make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o -c /<>/demos/dox/basic/enable_if.cpp [ 61%] Linking CXX executable ../bin/demo_dox_basic_enable_if cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_enable_if.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o -o ../bin/demo_dox_basic_enable_if -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_basic_enable_if make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_filter_sam make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -c /<>/demos/unassigned_or_unused/filter_sam.cpp In file included from /<>/demos/unassigned_or_unused/filter_sam.cpp:18: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/filter_sam.cpp:18: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/filter_sam.cpp:18: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/filter_sam.cpp:18: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/filter_sam.cpp:18: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/unassigned_or_unused/filter_sam.cpp:74:9: note: in instantiation of function template specialization 'seqan::loadContigs, seqan::String > >' requested here loadContigs(fragmentStore, options.referenceFilename); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/filter_sam.cpp:18: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/unassigned_or_unused/filter_sam.cpp:74:9: note: in instantiation of function template specialization 'seqan::loadContigs, seqan::String > >' requested here loadContigs(fragmentStore, options.referenceFilename); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 61%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_final_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_final_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_parsing_command_line_arguments_final_solution make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -c /<>/demos/tutorial/seed_and_extend/solution1.cpp [ 61%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_seed_and_extend_solution1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/global_alignment_hirschberg_impl.h:468:21: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here finger1 = col_; ^ /<>/include/seqan/align/global_alignment_specialized.h:72:12: note: in instantiation of function template specialization 'seqan::_globalAlignment >, seqan::Tag, seqan::String >, seqan::Tag, int, seqan::Tag >' requested here return _globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); ^ /<>/include/seqan/align/global_alignment_specialized.h:83:12: note: in instantiation of function template specialization 'seqan::globalAlignment >, seqan::Tag, seqan::String >, seqan::Tag, int>' requested here return globalAlignment(row(align, 0), row(align, 1), scoringScheme, Hirschberg()); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp:22:17: note: in instantiation of function template specialization 'seqan::globalAlignment >, seqan::Tag, int>' requested here int score = globalAlignment(align, Score(1, -1, -1), Hirschberg()); ^ In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/global_alignment_hirschberg_impl.h:468:21: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here finger1 = col_; ^ /<>/include/seqan/align/global_alignment_specialized.h:72:12: note: in instantiation of function template specialization 'seqan::_globalAlignment >, seqan::Tag, seqan::String >, seqan::Tag, int, seqan::Tag >' requested here return _globalAlignment(gapsH, gapsV, scoringScheme, Hirschberg()); ^ /<>/include/seqan/align/global_alignment_specialized.h:83:12: note: in instantiation of function template specialization 'seqan::globalAlignment >, seqan::Tag, seqan::String >, seqan::Tag, int>' requested here return globalAlignment(row(align, 0), row(align, 1), scoringScheme, Hirschberg()); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp:22:17: note: in instantiation of function template specialization 'seqan::globalAlignment >, seqan::Tag, int>' requested here int score = globalAlignment(align, Score(1, -1, -1), Hirschberg()); ^ 2 warnings generated. [ 62%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 62%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_store_store_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -c /<>/demos/dox/store/store_example.cpp In file included from /<>/demos/dox/store/store_example.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/store/store_example.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/store/store_example.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/store/store_example.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/store/store_example.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/dox/store/store_example.cpp:14:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, pathGenome.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/store/store_example.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/dox/store/store_example.cpp:14:5: note: in instantiation of function template specialization 'seqan::loadContigs, const char *>' requested here loadContigs(store, pathGenome.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 62%] Linking CXX executable ../bin/demo_dox_store_store_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_store_store_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -o ../bin/demo_dox_store_store_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 62%] Built target demo_dox_store_store_example make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_dag_shortest_path make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -c /<>/demos/dox/graph_algorithms/dag_shortest_path.cpp 6 warnings generated. [ 63%] Linking CXX executable ../bin/demo_unassigned_or_unused_filter_sam cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -o ../bin/demo_unassigned_or_unused_filter_sam -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target demo_unassigned_or_unused_filter_sam make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_misc_interval_tree_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -c /<>/demos/dox/misc/interval_tree_example.cpp In file included from /<>/demos/dox/misc/interval_tree_example.cpp:2: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1562:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1532:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, int, seqan::String > >' requested here findIntervals(result, g, pm, act_knot, query_begin, query_end); ^ /<>/include/seqan/misc/interval_tree.h:1513:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, int, seqan::String > >' requested here findIntervals(result, tree.g, tree.pm, query_begin, query_end); ^ /<>/demos/dox/misc/interval_tree_example.cpp:22:5: note: in instantiation of function template specialization 'seqan::findIntervals >, int>' requested here findIntervals(results, tree, 550, 900); ^ [ 63%] Linking CXX executable ../bin/demo_dox_graph_algorithms_dag_shortest_path cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -o ../bin/demo_dox_graph_algorithms_dag_shortest_path -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target demo_dox_graph_algorithms_dag_shortest_path make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_gff2gtf make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o -c /<>/demos/unassigned_or_unused/gff2gtf.cpp 1 warning generated. [ 63%] Linking CXX executable ../bin/demo_dox_misc_interval_tree_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_interval_tree_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -o ../bin/demo_dox_misc_interval_tree_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target demo_dox_misc_interval_tree_example make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_code_encapsulation make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o -c /<>/demos/tutorial/a_first_example/code_encapsulation.cpp [ 63%] Linking CXX executable ../bin/demo_tutorial_a_first_example_code_encapsulation cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o -o ../bin/demo_tutorial_a_first_example_code_encapsulation -lrt -lz -lbz2 In file included from /<>/demos/unassigned_or_unused/gff2gtf.cpp:6: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/gff2gtf.cpp:6: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/gff2gtf.cpp:6: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target demo_tutorial_a_first_example_code_encapsulation make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_bam_io_bam_tags_dict make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o -c /<>/demos/dox/bam_io/bam_tags_dict.cpp In file included from /<>/demos/unassigned_or_unused/gff2gtf.cpp:6: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/gff2gtf.cpp:6: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/unassigned_or_unused/gff2gtf.cpp:20:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(inFile, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/gff2gtf.cpp:6: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/unassigned_or_unused/gff2gtf.cpp:20:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(inFile, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/gff2gtf.cpp:6: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/unassigned_or_unused/gff2gtf.cpp:25:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, inFile); ^ In file included from /<>/demos/dox/bam_io/bam_tags_dict.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/bam_io/bam_tags_dict.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/bam_io/bam_tags_dict.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/bam_io/bam_tags_dict.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 64%] Linking CXX executable ../bin/demo_dox_bam_io_bam_tags_dict cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o -o ../bin/demo_dox_bam_io_bam_tags_dict -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_bam_io_bam_tags_dict make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_maxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_maxrepeats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o -c /<>/demos/dox/index/maxrepeats.cpp 7 warnings generated. [ 64%] Linking CXX executable ../bin/demo_unassigned_or_unused_gff2gtf cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o -o ../bin/demo_unassigned_or_unused_gff2gtf -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_unassigned_or_unused_gff2gtf make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_find_finder_online make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -c /<>/demos/dox/find/finder_online.cpp [ 64%] Linking CXX executable ../bin/demo_dox_find_finder_online cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_online.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -o ../bin/demo_dox_find_finder_online -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_find_finder_online make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_finder make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -c /<>/demos/dox/index/finder.cpp [ 64%] Linking CXX executable ../bin/demo_dox_index_maxrepeats cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_maxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o -o ../bin/demo_dox_index_maxrepeats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_index_maxrepeats make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_begin_range_goDown_representative_repLength make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -c /<>/demos/dox/index/begin_range_goDown_representative_repLength.cpp In file included from /<>/demos/dox/index/finder.cpp:1: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::IndexEsa, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/index/finder.cpp:14:12: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "to")) ^ In file included from /<>/demos/dox/index/begin_range_goDown_representative_repLength.cpp:1: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1898:23: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = nodeDesc; ^ /<>/include/seqan/index/index_esa_stree.h:1928:16: note: in instantiation of function template specialization 'seqan::_goDownChar >, seqan::IndexEsa >, seqan::Preorder, char>' requested here while (_goDownChar(node, *p_begin)) ^ /<>/include/seqan/index/index_esa_stree.h:1974:16: note: in instantiation of function template specialization 'seqan::_goDownString >, seqan::IndexEsa >, seqan::Preorder, char [5], unsigned long>' requested here return _goDownString(it, obj, dummy); ^ /<>/include/seqan/index/index_esa_stree.h:1985:16: note: in instantiation of function template specialization 'seqan::_goDownObject >, seqan::IndexEsa >, seqan::Preorder, char [5]>' requested here return _goDownObject(it, obj, typename IsSequence::Type()); ^ /<>/demos/dox/index/begin_range_goDown_representative_repLength.cpp:12:5: note: in instantiation of function template specialization 'seqan::goDown >, seqan::IndexEsa >, seqan::Preorder, char [5]>' requested here goDown(it, "ISSI"); ^ 1 warning generated. [ 64%] Linking CXX executable ../bin/demo_dox_index_finder cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_finder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -o ../bin/demo_dox_index_finder -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_index_finder make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_basic_metaprogramming_math make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -c /<>/demos/dox/basic/metaprogramming_math.cpp 1 warning generated. [ 64%] Linking CXX executable ../bin/demo_dox_index_begin_range_goDown_representative_repLength cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -o ../bin/demo_dox_index_begin_range_goDown_representative_repLength -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_index_begin_range_goDown_representative_repLength make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_modifier_modified_string_nested make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -c /<>/demos/dox/modifier/modified_string_nested.cpp [ 64%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_math cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_math.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -o ../bin/demo_dox_basic_metaprogramming_math -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_basic_metaprogramming_math make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_solution_4_templateSubclassing make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -c /<>/demos/tutorial/a_first_example/solution_4_templateSubclassing.cpp [ 64%] Linking CXX executable ../bin/demo_dox_modifier_modified_string_nested cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -o ../bin/demo_dox_modifier_modified_string_nested -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_modifier_modified_string_nested make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_extend_extend_alignment make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -c /<>/demos/dox/align_extend/extend_alignment.cpp [ 64%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_kruskals_algorithm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -c /<>/demos/dox/graph_algorithms/kruskals_algorithm.cpp [ 64%] Linking CXX executable ../bin/demo_dox_graph_algorithms_kruskals_algorithm cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_kruskals_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_graph_algorithms_kruskals_algorithm make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_integrate_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -c /<>/demos/dox/align/integrate_align.cpp [ 65%] Linking CXX executable ../bin/demo_dox_align_integrate_align cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_integrate_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -o ../bin/demo_dox_align_integrate_align -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target demo_dox_align_integrate_align make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_solution_4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -c /<>/demos/tutorial/a_first_example/solution_4.cpp [ 65%] Linking CXX executable ../bin/demo_dox_align_extend_extend_alignment cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_extend_extend_alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -o ../bin/demo_dox_align_extend_extend_alignment -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target demo_dox_align_extend_extend_alignment make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_iterator_short make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o -c /<>/demos/dox/index/iterator_short.cpp [ 65%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target demo_tutorial_a_first_example_solution_4 make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_basic_zip_iterator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o -c /<>/demos/dox/basic/zip_iterator.cpp In file included from /<>/demos/dox/index/iterator_short.cpp:2: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/dox/index/iterator_short.cpp:14:63: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type it(index); ^ [ 67%] Linking CXX executable ../bin/demo_dox_basic_zip_iterator cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_zip_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o -o ../bin/demo_dox_basic_zip_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target demo_dox_basic_zip_iterator make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_genome_annotations_assignment_2_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -c /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp 1 warning generated. [ 67%] Linking CXX executable ../bin/demo_dox_index_iterator_short cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_iterator_short.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o -o ../bin/demo_dox_index_iterator_short -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target demo_dox_index_iterator_short make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_assignment_4_workshop_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -c /<>/demos/tutorial/iterators/assignment_4_workshop_solution.cpp In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 67%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_4_workshop_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_4_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target demo_tutorial_iterators_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_types_graph_algo_dijkstra make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o -c /<>/demos/dox/graph_types/graph_algo_dijkstra.cpp In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:14:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, file); ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:4: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/demos/tutorial/genome_annotations/assignment_2_solution.cpp:17:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ [ 67%] Linking CXX executable ../bin/demo_dox_graph_types_graph_algo_dijkstra cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o -o ../bin/demo_dox_graph_types_graph_algo_dijkstra -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target demo_dox_graph_types_graph_algo_dijkstra make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_gff_and_gtf_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o -c /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp 8 warnings generated. [ 67%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_2_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_2_solution -lrt -lz -lbz2 In file included from /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:1: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target demo_tutorial_genome_annotations_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_assignment2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' In file included from /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o In file included from /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:1: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution1.cpp:12:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o -c /<>/demos/tutorial/pattern_matching/assignment2.cpp [ 68%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target demo_tutorial_pattern_matching_assignment2 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_solution_6 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -c /<>/demos/tutorial/a_first_example/solution_6.cpp 6 warnings generated. [ 68%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target demo_tutorial_gff_and_gtf_io_solution1 make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_example_journal_string_basic make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o -c /<>/demos/tutorial/journaled_set/example_journal_string_basic.cpp [ 69%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_6 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_6 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_tutorial_a_first_example_solution_6 make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_basic_metaprogramming_logic make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -c /<>/demos/dox/basic/metaprogramming_logic.cpp [ 69%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_journal_string_basic cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o -o ../bin/demo_tutorial_journaled_set_example_journal_string_basic -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_tutorial_journaled_set_example_journal_string_basic make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_solution_1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o -c /<>/demos/tutorial/a_first_example/solution_1.cpp [ 69%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_logic cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -o ../bin/demo_dox_basic_metaprogramming_logic -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_dox_basic_metaprogramming_logic make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_genome_annotations_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -c /<>/demos/tutorial/genome_annotations/base.cpp [ 69%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_tutorial_a_first_example_solution_1 make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_basic_metaprogramming_control make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -c /<>/demos/dox/basic/metaprogramming_control.cpp [ 69%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_control cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_control.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -o ../bin/demo_dox_basic_metaprogramming_control -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_dox_basic_metaprogramming_control make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_transitive_closure make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o -c /<>/demos/dox/graph_algorithms/transitive_closure.cpp In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/base.cpp:19:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/base.cpp:19:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/genome_annotations/base.cpp:21:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, file); ^ In file included from /<>/demos/tutorial/genome_annotations/base.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/demos/tutorial/genome_annotations/base.cpp:25:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ [ 69%] Linking CXX executable ../bin/demo_dox_graph_algorithms_transitive_closure cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o -o ../bin/demo_dox_graph_algorithms_transitive_closure -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_dox_graph_algorithms_transitive_closure make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_prims_algorithm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o -c /<>/demos/dox/graph_algorithms/prims_algorithm.cpp [ 70%] Linking CXX executable ../bin/demo_dox_graph_algorithms_prims_algorithm cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/dox/graph_algorithms/prims_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_prims_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target demo_dox_graph_algorithms_prims_algorithm make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignment_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o -c /<>/demos/tutorial/alignment/align.cpp 8 warnings generated. [ 70%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -o ../bin/demo_tutorial_genome_annotations_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target demo_tutorial_genome_annotations_base make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_score_score make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object demos/CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -c /<>/demos/dox/score/score.cpp In file included from /<>/demos/tutorial/alignment/align.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/demos/tutorial/alignment/align.cpp:138:8: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' first required here it = begin(row1); ^ 1 warning generated. [ 70%] Linking CXX executable ../bin/demo_tutorial_alignment_align cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_align.dir/tutorial/alignment/align.cpp.o -o ../bin/demo_tutorial_alignment_align -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target demo_tutorial_alignment_align make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends 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-Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -c /<>/demos/tutorial/sequences/assignment_4_solution.cpp [ 71%] Linking CXX executable ../bin/demo_dox_score_score cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_score_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -o ../bin/demo_dox_score_score -lrt -lz -lbz2 [ 71%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_4_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_4_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target demo_tutorial_sequences_assignment_4_solution make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake --color= [ 71%] Built target demo_dox_score_score make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_align_gaps_clipping make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build Scanning dependencies of target demo_dox_find_finder_aho_corasick make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 71%] Building CXX object demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -c /<>/demos/howto/align_gaps_clipping.cpp [ 71%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o -c /<>/demos/dox/find/finder_aho_corasick.cpp [ 71%] Linking CXX executable ../bin/demo_howto_align_gaps_clipping cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_align_gaps_clipping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -o ../bin/demo_howto_align_gaps_clipping -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target demo_howto_align_gaps_clipping make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_UNUSED_shape make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 71%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o -c /<>/demos/dox/index/UNUSED_shape.cpp [ 71%] Linking CXX executable ../bin/demo_dox_find_finder_aho_corasick cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_aho_corasick.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o -o ../bin/demo_dox_find_finder_aho_corasick -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target demo_dox_find_finder_aho_corasick make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_q_gram_index_index_qgram_hash make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 71%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -c /<>/demos/tutorial/q_gram_index/index_qgram_hash.cpp [ 71%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape.dir/dox/index/UNUSED_shape.cpp.o -o ../bin/demo_dox_index_UNUSED_shape -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target demo_dox_index_UNUSED_shape make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_mummy.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_mummy make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o -c /<>/demos/dox/index/mummy.cpp [ 72%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_qgram_hash cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_qgram_hash -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_tutorial_q_gram_index_index_qgram_hash make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_depth_first_search make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o -c /<>/demos/dox/graph_algorithms/depth_first_search.cpp [ 72%] Linking CXX executable ../bin/demo_dox_graph_algorithms_depth_first_search cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_depth_first_search -lrt -lz -lbz2 In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_dox_graph_algorithms_depth_first_search make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_dijkstra make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o -c /<>/demos/dox/graph_algorithms/dijkstra.cpp In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/dox/index/mummy.cpp:59:18: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(file, argv[arg])) ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/demos/dox/index/mummy.cpp:64:13: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here readRecords(meta, indexText(index), file); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 23 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ In file included from /<>/demos/dox/index/mummy.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin, seqan::External >, 4194304, 2> > >, seqan::Owner > >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_algs_multi.h:119:13: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/dox/index/mummy.cpp:12:43: note: in instantiation of member function 'seqan::Iter, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here typename Iterator::Type it(esa, minLen); // set minimum MUM length ^ /<>/demos/dox/index/mummy.cpp:72:5: note: in instantiation of function template specialization 'findMUMs, seqan::External >, 4194304, 2> > >, seqan::Owner > >, seqan::IndexEsa > >' requested here findMUMs(index, minLen); ^ /<>/demos/dox/index/mummy.cpp:149:16: note: in instantiation of function template specialization 'runMummy >, 4194304, 2> > >' requested here return runMummy >(argc, argv, seqCount, optMinLen); ^ [ 72%] Linking CXX executable ../bin/demo_dox_graph_algorithms_dijkstra cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o -o ../bin/demo_dox_graph_algorithms_dijkstra -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_dox_graph_algorithms_dijkstra make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_misc_name_store_cache make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o -c /<>/demos/dox/misc/name_store_cache.cpp [ 72%] Linking CXX executable ../bin/demo_dox_misc_name_store_cache cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_name_store_cache.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o -o ../bin/demo_dox_misc_name_store_cache -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_dox_misc_name_store_cache make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_find_stringset make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -c /<>/demos/unassigned_or_unused/index_find_stringset.cpp In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::Owner > >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::Owner > >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::Owner > >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::Owner > >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack >, seqan::Owner > >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ In file included from /<>/demos/unassigned_or_unused/index_find_stringset.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/unassigned_or_unused/index_find_stringset.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(myFinder, "be")) ^ 8 warnings generated. [ 72%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find_stringset cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -o ../bin/demo_unassigned_or_unused_index_find_stringset -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_unassigned_or_unused_index_find_stringset make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_global_alignment_unbanded make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o -c /<>/demos/dox/align/global_alignment_unbanded.cpp 14 warnings generated. [ 72%] Linking CXX executable ../bin/demo_dox_index_mummy cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_mummy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o -o ../bin/demo_dox_index_mummy -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_dox_index_mummy make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake --color= Scanning dependencies of target demo_blast_blast_in_lowlevel make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -c /<>/demos/blast/blast_in_lowlevel.cpp [ 72%] Linking CXX executable ../bin/demo_dox_align_global_alignment_unbanded cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o -o ../bin/demo_dox_align_global_alignment_unbanded -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_dox_align_global_alignment_unbanded make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_vcf_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -c /<>/demos/tutorial/vcf_io/solution1.cpp In file included from /<>/demos/tutorial/vcf_io/solution1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ In file included from /<>/demos/tutorial/vcf_io/solution1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/vcf_io/solution1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/vcf_io/solution1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/solution1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ In file included from /<>/demos/tutorial/vcf_io/solution1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/include/seqan/vcf_io/vcf_file.h:198:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >' requested here readHeader(header, context(file), file.iter, file.format); ^ /<>/demos/tutorial/vcf_io/solution1.cpp:16:5: note: in instantiation of function template specialization 'seqan::readHeader' requested here readHeader(header, vcfIn); ^ [ 73%] Linking CXX executable ../bin/demo_blast_blast_in_lowlevel cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_blast_blast_in_lowlevel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -o ../bin/demo_blast_blast_in_lowlevel -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_blast_blast_in_lowlevel make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_string make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -c /<>/demos/dox/sequence/string.cpp [ 73%] Linking CXX executable ../bin/demo_dox_sequence_string cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -o ../bin/demo_dox_sequence_string -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_sequence_string make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_rooted_iterator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -c /<>/demos/unassigned_or_unused/rooted_iterator.cpp 5 warnings generated. [ 73%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -o ../bin/demo_tutorial_vcf_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_tutorial_vcf_io_solution1 make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_using_zip_iterator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o -c /<>/demos/howto/using_zip_iterator.cpp [ 73%] Linking CXX executable ../bin/demo_unassigned_or_unused_rooted_iterator cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -o ../bin/demo_unassigned_or_unused_rooted_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_unassigned_or_unused_rooted_iterator make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -c /<>/demos/dox/align/align.cpp [ 73%] Linking CXX executable ../bin/demo_howto_using_zip_iterator cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_using_zip_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o -o ../bin/demo_howto_using_zip_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_howto_using_zip_iterator make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indices_find2_index_approx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -c /<>/demos/tutorial/indices/find2_index_approx.cpp In file included from /<>/demos/tutorial/indices/find2_index_approx.cpp:5: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/include/seqan/index/find2_index_approx.h:591:78: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here Iter >, VSTree > > it(index); ^ /<>/demos/tutorial/indices/find2_index_approx.cpp:29:5: note: in instantiation of function template specialization 'seqan::find<0, 2, (lambda at /<>/demos/tutorial/indices/find2_index_approx.cpp:19:21), seqan::String, seqan::Alloc >, seqan::FMIndex >, seqan::SimpleType, seqan::Alloc, seqan::Tag >' requested here find<0, 2>(delegate, index, pattern, HammingDistance()); ^ In file included from /<>/demos/tutorial/indices/find2_index_approx.cpp:5: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/include/seqan/index/find2_index_approx.h:591:78: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here Iter >, VSTree > > it(index); ^ /<>/demos/tutorial/indices/find2_index_approx.cpp:29:5: note: in instantiation of function template specialization 'seqan::find<0, 2, (lambda at /<>/demos/tutorial/indices/find2_index_approx.cpp:19:21), seqan::String, seqan::Alloc >, seqan::FMIndex >, seqan::SimpleType, seqan::Alloc, seqan::Tag >' requested here find<0, 2>(delegate, index, pattern, HammingDistance()); ^ In file included from /<>/demos/tutorial/indices/find2_index_approx.cpp:5: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/include/seqan/index/find2_index_approx.h:591:78: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here Iter >, VSTree > > it(index); ^ /<>/demos/tutorial/indices/find2_index_approx.cpp:29:5: note: in instantiation of function template specialization 'seqan::find<0, 2, (lambda at /<>/demos/tutorial/indices/find2_index_approx.cpp:19:21), seqan::String, seqan::Alloc >, seqan::FMIndex >, seqan::SimpleType, seqan::Alloc, seqan::Tag >' requested here find<0, 2>(delegate, index, pattern, HammingDistance()); ^ In file included from /<>/demos/tutorial/indices/find2_index_approx.cpp:5: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_bidirectional_stree.h:80:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/include/seqan/index/find2_index_approx.h:591:78: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > >::Iter' requested here Iter >, VSTree > > it(index); ^ /<>/demos/tutorial/indices/find2_index_approx.cpp:29:5: note: in instantiation of function template specialization 'seqan::find<0, 2, (lambda at /<>/demos/tutorial/indices/find2_index_approx.cpp:19:21), seqan::String, seqan::Alloc >, seqan::FMIndex >, seqan::SimpleType, seqan::Alloc, seqan::Tag >' requested here find<0, 2>(delegate, index, pattern, HammingDistance()); ^ [ 73%] Linking CXX executable ../bin/demo_dox_align_align cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -o ../bin/demo_dox_align_align -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_align_align make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_annotation_converter make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o -c /<>/demos/unassigned_or_unused/annotation_converter.cpp In file included from /<>/demos/unassigned_or_unused/annotation_converter.cpp:4: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/annotation_converter.cpp:4: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/annotation_converter.cpp:4: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/annotation_converter.cpp:4: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/annotation_converter.cpp:4: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/unassigned_or_unused/annotation_converter.cpp:37:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/annotation_converter.cpp:4: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/unassigned_or_unused/annotation_converter.cpp:37:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/annotation_converter.cpp:4: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/unassigned_or_unused/annotation_converter.cpp:38:9: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, file); ^ 4 warnings generated. [ 73%] Linking CXX executable ../bin/demo_tutorial_indices_find2_index_approx cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -o ../bin/demo_tutorial_indices_find2_index_approx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_tutorial_indices_find2_index_approx make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_profile_profile_seq_score make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o -c /<>/demos/dox/align_profile/profile_seq_score.cpp In file included from /<>/demos/dox/align_profile/profile_seq_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/align_profile/profile_seq_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/align_profile/profile_seq_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/align_profile/profile_seq_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 73%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_score cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_score -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_align_profile_profile_seq_score make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_4_workshop_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -c /<>/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp [ 73%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_basic_simple_type_construction make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -c /<>/demos/dox/basic/simple_type_construction.cpp [ 73%] Linking CXX executable ../bin/demo_dox_basic_simple_type_construction cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_simple_type_construction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -o ../bin/demo_dox_basic_simple_type_construction -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_basic_simple_type_construction make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indices_assignment_1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -c /<>/demos/tutorial/indices/assignment_1.cpp 7 warnings generated. [ 73%] Linking CXX executable ../bin/demo_unassigned_or_unused_annotation_converter cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o -o ../bin/demo_unassigned_or_unused_annotation_converter -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_unassigned_or_unused_annotation_converter make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_compute_alignment_stats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -c /<>/demos/dox/align/compute_alignment_stats.cpp [ 73%] Linking CXX executable ../bin/demo_tutorial_indices_assignment_1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_assignment_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -o ../bin/demo_tutorial_indices_assignment_1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_tutorial_indices_assignment_1 make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_sufarray make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o -c /<>/demos/unassigned_or_unused/index_sufarray.cpp [ 73%] Linking CXX executable ../bin/demo_dox_align_compute_alignment_stats cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_compute_alignment_stats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -o ../bin/demo_dox_align_compute_alignment_stats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_align_compute_alignment_stats make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_find_repeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_find_repeats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o -c /<>/demos/dox/index/find_repeats.cpp [ 73%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_sufarray cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o -o ../bin/demo_unassigned_or_unused_index_sufarray -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_unassigned_or_unused_index_sufarray make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_assignment2_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/assignment2_solution.cpp In file included from /<>/demos/dox/index/find_repeats.cpp:4: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/index/find_repeats.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/index/find_repeats.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/index/find_repeats.cpp:4: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/index/find_repeats.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/dox/index/find_repeats.cpp:17:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn file(path.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/index/find_repeats.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/dox/index/find_repeats.cpp:18:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(id, seq, file); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 74%] Linking CXX executable ../bin/demo_dox_index_find_repeats cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_find_repeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o -o ../bin/demo_dox_index_find_repeats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_dox_index_find_repeats make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_heaviest_increasing_subsequence make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o -c /<>/demos/dox/graph_algorithms/heaviest_increasing_subsequence.cpp [ 74%] Linking CXX executable ../bin/demo_dox_graph_algorithms_heaviest_increasing_subsequence cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/dox/graph_algorithms/heaviest_increasing_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_heaviest_increasing_subsequence -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_dox_graph_algorithms_heaviest_increasing_subsequence make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_statistics_load_markov_model make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o -c /<>/demos/dox/statistics/load_markov_model.cpp [ 74%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basic_techniques_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o -c /<>/demos/tutorial/basic_techniques/base.cpp In file included from /<>/demos/dox/statistics/load_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/statistics/load_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/statistics/load_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/statistics/load_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/statistics/load_markov_model.cpp:4: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/alignment_free/kmer_functions.h:723:39: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, unsigned long>' requested here String my_prefix = prefix(word2, my_min); ^ /<>/include/seqan/alignment_free/kmer_functions.h:487:5: note: in instantiation of function template specialization 'seqan::calculatePeriodicity, seqan::Alloc > >' requested here calculatePeriodicity(periodicity, word, word); ^ /<>/demos/dox/statistics/load_markov_model.cpp:35:5: note: in instantiation of function template specialization 'seqan::calculateVariance, seqan::SimpleType >' requested here calculateVariance(variance, word, mm, n); ^ [ 74%] Linking CXX executable ../bin/demo_tutorial_basic_techniques_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basic_techniques_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basic_techniques_base.dir/tutorial/basic_techniques/base.cpp.o -o ../bin/demo_tutorial_basic_techniques_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_tutorial_basic_techniques_base make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sam_and_bam_io_example7 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o -c /<>/demos/tutorial/sam_and_bam_io/example7.cpp 5 warnings generated. [ 74%] Linking CXX executable ../bin/demo_dox_statistics_load_markov_model cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_statistics_load_markov_model.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o -o ../bin/demo_dox_statistics_load_markov_model -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_dox_statistics_load_markov_model make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_example_join make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -c /<>/demos/tutorial/journaled_set/example_join.cpp In file included from /<>/demos/tutorial/sam_and_bam_io/example7.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example7.cpp:2: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example7.cpp:2: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sam_and_bam_io/example7.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/example_join.cpp:3: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/example_join.cpp:4: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/example_join.cpp:4: In file included from /<>/include/seqan/journaled_set.h:45: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/example_join.cpp:3: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 74%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_join cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_join.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -o ../bin/demo_tutorial_journaled_set_example_join -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_tutorial_journaled_set_example_join make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/base.cpp 4 warnings generated. [ 74%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example7 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example7 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_example7 make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_counting make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o -c /<>/demos/dox/index/counting.cpp In file included from /<>/demos/dox/index/counting.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/dox/index/counting.cpp:19:74: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type tdIterator(myIndex); ^ [ 74%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_tutorial_parsing_command_line_arguments_base make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_benchmark_stream_write make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o -c /<>/demos/unassigned_or_unused/benchmark_stream_write.cpp 1 warning generated. [ 74%] Linking CXX executable ../bin/demo_dox_index_counting cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_counting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_counting.dir/dox/index/counting.cpp.o -o ../bin/demo_dox_index_counting -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_dox_index_counting make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_bam_io_bam_file_in make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o -c /<>/demos/dox/bam_io/bam_file_in.cpp In file included from /<>/demos/unassigned_or_unused/benchmark_stream_write.cpp:47: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream_write.cpp:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream_write.cpp:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/benchmark_stream_write.cpp:47: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/bam_io/bam_file_in.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/bam_io/bam_file_in.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/bam_io/bam_file_in.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/bam_io/bam_file_in.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 74%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream_write cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream_write -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_unassigned_or_unused_benchmark_stream_write make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indices_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -c /<>/demos/tutorial/indices/base.cpp 4 warnings generated. [ 75%] Linking CXX executable ../bin/demo_dox_bam_io_bam_file_in cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bam_io_bam_file_in.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bam_io_bam_file_in.dir/dox/bam_io/bam_file_in.cpp.o -o ../bin/demo_dox_bam_io_bam_file_in -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target demo_dox_bam_io_bam_file_in make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_breadth_first_search make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -c /<>/demos/dox/graph_algorithms/breadth_first_search.cpp In file included from /<>/demos/tutorial/indices/base.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container, seqan::Alloc >, seqan::IndexEsa, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack, seqan::Alloc >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex, seqan::Alloc >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/indices/base.cpp:61:5: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::IndexEsa, const seqan::Tag, char [5]>' requested here find(esaFinder, "ACGT"); // first occurrence of "ACGT" ^ In file included from /<>/demos/tutorial/indices/base.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_fm.h:463:12: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/tutorial/indices/base.cpp:81:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ In file included from /<>/demos/tutorial/indices/base.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_fm.h:463:12: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/tutorial/indices/base.cpp:81:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ In file included from /<>/demos/tutorial/indices/base.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_fm.h:463:12: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/tutorial/indices/base.cpp:81:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ In file included from /<>/demos/tutorial/indices/base.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_fm.h:445:5: note: in instantiation of function template specialization 'seqan::createSuffixArray >, 4194304, 2> > >, seqan::String >, seqan::Skew7>' requested here createSuffixArray(tempSA, text, TAlgo()); ^ /<>/include/seqan/index/index_fm.h:463:12: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, FibreSALF()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, void, seqan::FMIndexConfig >' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/tutorial/indices/base.cpp:81:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ In file included from /<>/demos/tutorial/indices/base.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, 4194304, 2> > >, seqan::String, seqan::External >, 4194304, 2> > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, 4194304, 2> > >, seqan::String, seqan::External >, 4194304, 2> > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/tutorial/indices/base.cpp:92:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(external_index, EsaSA()); ^ In file included from /<>/demos/tutorial/indices/base.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, 4194304, 2> > >, seqan::String, seqan::External >, 4194304, 2> > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, 4194304, 2> > >, seqan::String, seqan::External >, 4194304, 2> > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/tutorial/indices/base.cpp:92:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(external_index, EsaSA()); ^ In file included from /<>/demos/tutorial/indices/base.cpp:2: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, 4194304, 2> > >, seqan::String, seqan::External >, 4194304, 2> > >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, 4194304, 2> > >, seqan::String, seqan::External >, 4194304, 2> > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/demos/tutorial/indices/base.cpp:92:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::External >, 4194304, 2> > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(external_index, EsaSA()); ^ [ 75%] Linking CXX executable ../bin/demo_dox_graph_algorithms_breadth_first_search cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_breadth_first_search -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target demo_dox_graph_algorithms_breadth_first_search make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_floyd_warshall_algorithm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -c /<>/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp [ 76%] Linking CXX executable ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target demo_dox_graph_algorithms_floyd_warshall_algorithm make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basics_strings make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -c /<>/demos/tutorial/basics/strings.cpp [ 77%] Linking CXX executable ../bin/demo_tutorial_basics_strings cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -o ../bin/demo_tutorial_basics_strings -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target demo_tutorial_basics_strings make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_bed_io_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o -c /<>/demos/tutorial/bed_io/base.cpp [ 77%] Linking CXX executable ../bin/demo_tutorial_bed_io_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o -o ../bin/demo_tutorial_bed_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target demo_tutorial_bed_io_base make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_UNUSED_suffix make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -c /<>/demos/dox/sequence/UNUSED_suffix.cpp [ 77%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_suffix cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_suffix -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target demo_dox_sequence_UNUSED_suffix make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -c /<>/demos/tutorial/sequence_io/solution2.cpp In file included from /<>/demos/tutorial/sequence_io/solution2.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution2.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequence_io/solution2.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/solution2.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequence_io/solution2.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/sequence_io/solution2.cpp:12:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, toCString(seqFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequence_io/solution2.cpp:1: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/sequence_io/solution2.cpp:20:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(id, seq, seqFileIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 78%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -o ../bin/demo_tutorial_sequence_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target demo_tutorial_sequence_io_solution2 make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indexed_fasta_io_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o -c /<>/demos/tutorial/indexed_fasta_io/base.cpp 8 warnings generated. [ 78%] Linking CXX executable ../bin/demo_tutorial_indices_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -o ../bin/demo_tutorial_indices_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target demo_tutorial_indices_base make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_misc_get_terminal_size make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -c /<>/demos/dox/misc/get_terminal_size.cpp [ 78%] Linking CXX executable ../bin/demo_dox_misc_get_terminal_size cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_get_terminal_size.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -o ../bin/demo_dox_misc_get_terminal_size -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target demo_dox_misc_get_terminal_size make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_longest_common_subsequence make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -c /<>/demos/dox/graph_algorithms/longest_common_subsequence.cpp In file included from /<>/demos/tutorial/indexed_fasta_io/base.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/indexed_fasta_io/base.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/indexed_fasta_io/base.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/indexed_fasta_io/base.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 78%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target demo_tutorial_indexed_fasta_io_base make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_file_io_overview_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o -c /<>/demos/tutorial/file_io_overview/solution2.cpp [ 78%] Linking CXX executable ../bin/demo_dox_graph_algorithms_longest_common_subsequence cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_longest_common_subsequence -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target demo_dox_graph_algorithms_longest_common_subsequence make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp In file included from /<>/demos/tutorial/file_io_overview/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/file_io_overview/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/file_io_overview/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/file_io_overview/solution2.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 79%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_longest_increasing_subsequence make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -c /<>/demos/dox/graph_algorithms/longest_increasing_subsequence.cpp 4 warnings generated. [ 79%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_file_io_overview_solution2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp [ 79%] Linking CXX executable ../bin/demo_dox_graph_algorithms_longest_increasing_subsequence cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_longest_increasing_subsequence -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_dox_graph_algorithms_longest_increasing_subsequence make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_find_index make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o -c /<>/demos/tutorial/pattern_matching/find_index.cpp In file included from /<>/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp:8: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp:31:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(vin, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp:8: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/demos/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp:31:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(vin, argv[1])) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 2 warnings generated. In file included from /<>/demos/tutorial/pattern_matching/find_index.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa >, seqan::Index >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::IndexEsa, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexEsa, const seqan::Tag, seqan::String > >' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index.cpp:17:12: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexEsa, const seqan::Tag, seqan::Pattern >, void> >' requested here while (find(finder, pattern)) ^ [ 79%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignment_graph_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o -c /<>/demos/tutorial/alignment/graph_assignment1.cpp 1 warning generated. [ 79%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_index cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/tutorial/pattern_matching/find_index.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_index -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_pattern_matching_find_index make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tabix_io_tabix_vcf make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o -c /<>/demos/tabix_io/tabix_vcf.cpp In file included from /<>/demos/tabix_io/tabix_vcf.cpp:3: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/tabix_io/tabix_index_tbi.h:446:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(tbi, filename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tabix_io/tabix_vcf.cpp:3: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/tabix_io/tabix_index_tbi.h:446:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(tbi, filename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tabix_io/tabix_vcf.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tabix_io/tabix_vcf.cpp:18:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(vcfFile, argv[1])) ^ In file included from /<>/demos/tabix_io/tabix_vcf.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tabix_io/tabix_vcf.cpp:18:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(vcfFile, argv[1])) ^ In file included from /<>/demos/tabix_io/tabix_vcf.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/include/seqan/vcf_io/vcf_file.h:198:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >' requested here readHeader(header, context(file), file.iter, file.format); ^ /<>/demos/tabix_io/tabix_vcf.cpp:26:5: note: in instantiation of function template specialization 'seqan::readHeader' requested here readHeader(header, vcfFile); ^ [ 79%] Linking CXX executable ../bin/demo_tutorial_alignment_graph_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/tutorial/alignment/graph_assignment1.cpp.o -o ../bin/demo_tutorial_alignment_graph_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_alignment_graph_assignment1 make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_ford_fulkerson_algorithm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o -c /<>/demos/dox/graph_algorithms/ford_fulkerson_algorithm.cpp 5 warnings generated. [ 79%] Linking CXX executable ../bin/demo_tabix_io_tabix_vcf cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tabix_io_tabix_vcf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o -o ../bin/demo_tabix_io_tabix_vcf -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tabix_io_tabix_vcf make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_bed_io_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o -c /<>/demos/tutorial/bed_io/solution2.cpp [ 79%] Linking CXX executable ../bin/demo_dox_graph_algorithms_ford_fulkerson_algorithm cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/dox/graph_algorithms/ford_fulkerson_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_ford_fulkerson_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_dox_graph_algorithms_ford_fulkerson_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_strongly_connected_components make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o -c /<>/demos/dox/graph_algorithms/strongly_connected_components.cpp In file included from /<>/demos/tutorial/bed_io/solution2.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution2.cpp:10:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ In file included from /<>/demos/tutorial/bed_io/solution2.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution2.cpp:10:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/bed_io/solution2.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution2.cpp:10:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/bed_io/solution2.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bed_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution2.cpp:10:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/bed_io/solution2.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution2.cpp:10:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ 5 warnings generated. [ 79%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o -o ../bin/demo_tutorial_bed_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_bed_io_solution2 make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_topological_sort make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o -c /<>/demos/dox/graph_algorithms/topological_sort.cpp [ 79%] Linking CXX executable ../bin/demo_dox_graph_algorithms_strongly_connected_components cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o -o ../bin/demo_dox_graph_algorithms_strongly_connected_components -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_dox_graph_algorithms_strongly_connected_components make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o -c /<>/demos/tutorial/seed_and_extend/example2.cpp [ 79%] Linking CXX executable ../bin/demo_dox_graph_algorithms_topological_sort cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o -o ../bin/demo_dox_graph_algorithms_topological_sort -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_dox_graph_algorithms_topological_sort make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_split_split_alignment make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o -c /<>/demos/dox/align_split/split_alignment.cpp [ 79%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_seed_and_extend_example2 make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_begin_atEnd_representative_bottomUp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -c /<>/demos/dox/index/begin_atEnd_representative_bottomUp.cpp In file included from /<>/demos/dox/align_split/split_alignment.cpp:1: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/demos/dox/align_split/split_alignment.cpp:60:40: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, int>' requested here std::cout << "Reference Left " << prefix(ref, refSplitPosition) << "\n" ^ In file included from /<>/demos/dox/index/begin_atEnd_representative_bottomUp.cpp:1: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_stree.h:1547:16: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here return typename Iterator, BottomUp >::Type(index); ^ /<>/demos/dox/index/begin_atEnd_representative_bottomUp.cpp:11:17: note: in instantiation of function template specialization 'seqan::begin >, seqan::IndexEsa, seqan::Postorder>' requested here itDefault = begin(index, BottomUp()); ^ 1 warning generated. [ 79%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative_bottomUp cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative_bottomUp -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_dox_index_begin_atEnd_representative_bottomUp make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o -c /<>/demos/tutorial/string_sets/base.cpp [ 79%] Linking CXX executable ../bin/demo_tutorial_string_sets_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o -o ../bin/demo_tutorial_string_sets_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_string_sets_base make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_example_tags make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o -c /<>/demos/tutorial/a_first_example/example_tags.cpp [ 79%] Linking CXX executable ../bin/demo_tutorial_a_first_example_example_tags cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o -o ../bin/demo_tutorial_a_first_example_example_tags -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_a_first_example_example_tags make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -c /<>/demos/tutorial/index_iterators/iterator_solution1.cpp In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:2: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::Owner > >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::Owner > >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/demos/tutorial/index_iterators/iterator_solution1.cpp:15:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ 1 warning generated. [ 79%] Linking CXX executable ../bin/demo_dox_align_split_split_alignment cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_split_split_alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o -o ../bin/demo_dox_align_split_split_alignment -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_dox_align_split_split_alignment make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_UNUSED_shape_hash make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o -c /<>/demos/dox/index/UNUSED_shape_hash.cpp [ 80%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape_hash cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o -o ../bin/demo_dox_index_UNUSED_shape_hash -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target demo_dox_index_UNUSED_shape_hash make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_custom_file_endings.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_custom_file_endings make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object demos/CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o -c /<>/demos/howto/custom_file_endings.cpp In file included from /<>/demos/howto/custom_file_endings.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/howto/custom_file_endings.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/howto/custom_file_endings.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/howto/custom_file_endings.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/howto/custom_file_endings.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, seqan::Tag >' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::Tag, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/howto/custom_file_endings.cpp:66:17: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::Tag >::FormattedFile' requested here MySeqFileIn seqFile(path.c_str()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/howto/custom_file_endings.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/howto/custom_file_endings.cpp:71:5: note: in instantiation of function template specialization 'seqan::readRecord, seqan::String >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, seq, seqFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 81%] Linking CXX executable ../bin/demo_howto_custom_file_endings cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_custom_file_endings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o -o ../bin/demo_howto_custom_file_endings -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_howto_custom_file_endings make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_begin_atEnd_representative make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o -c /<>/demos/dox/index/begin_atEnd_representative.cpp 8 warnings generated. [ 81%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_index_iterators_iterator_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_graph_hmm_silent make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o -c /<>/demos/unassigned_or_unused/graph_hmm_silent.cpp In file included from /<>/demos/dox/index/begin_atEnd_representative.cpp:1: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/index_esa_stree.h:1534:66: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator, TSpec>::Type it(index); ^ /<>/demos/dox/index/begin_atEnd_representative.cpp:11:17: note: in instantiation of function template specialization 'seqan::begin >, seqan::IndexEsa, seqan::TopDown > >' requested here itDefault = begin(index, TopDown >()); ^ [ 81%] Linking CXX executable ../bin/demo_unassigned_or_unused_graph_hmm_silent cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o -o ../bin/demo_unassigned_or_unused_graph_hmm_silent -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_unassigned_or_unused_graph_hmm_silent make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_open_save make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -c /<>/demos/dox/index/open_save.cpp 1 warning generated. [ 81%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_dox_index_begin_atEnd_representative make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_assignment_3_workshop_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -c /<>/demos/tutorial/iterators/assignment_3_workshop_solution.cpp In file included from /<>/demos/dox/index/open_save.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/demos/dox/index/open_save.cpp:17:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexCreate(saveIndex, FibreSA()); ^ In file included from /<>/demos/dox/index/open_save.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/demos/dox/index/open_save.cpp:17:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexCreate(saveIndex, FibreSA()); ^ In file included from /<>/demos/dox/index/open_save.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/demos/dox/index/open_save.cpp:17:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexCreate(saveIndex, FibreSA()); ^ [ 81%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_3_workshop_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_3_workshop_solution -lrt -lz -lbz2 In file included from /<>/demos/dox/index/open_save.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/demos/dox/index/open_save.cpp:17:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexCreate(saveIndex, FibreSA()); ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_iterators_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend In file included from /<>/demos/dox/index/open_save.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/demos/dox/index/open_save.cpp:17:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexCreate(saveIndex, FibreSA()); ^ make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake --color= In file included from /<>/demos/dox/index/open_save.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/demos/dox/index/open_save.cpp:17:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexCreate(saveIndex, FibreSA()); ^ Scanning dependencies of target demo_tutorial_index_iterators_index_property_maps make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -c /<>/demos/tutorial/index_iterators/index_property_maps.cpp In file included from /<>/demos/dox/index/open_save.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:173:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayPipelining >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayPipelining(sa, s, Skew7()); ^ /<>/include/seqan/index/index_shims.h:198:9: note: in instantiation of function template specialization 'seqan::_createSuffixArrayWrapper >, seqan::Alloc >, seqan::String >, seqan::Owner >, seqan::Skew7>' requested here _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_::Type()); ^ /<>/include/seqan/index/index_shims.h:614:9: note: in instantiation of function template specialization 'seqan::createSuffixArray >, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::Skew7>' requested here createSuffixArray(indexSA(index), indexText(index), alg); ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/demos/dox/index/open_save.cpp:17:5: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexCreate(saveIndex, FibreSA()); ^ [ 81%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_property_maps cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -o ../bin/demo_tutorial_index_iterators_index_property_maps -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_index_iterators_index_property_maps make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_getOccurrences_getFrequency_range_getFibre make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -c /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::Owner > >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::Owner > >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:16:40: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ 7 warnings generated. [ 81%] Linking CXX executable ../bin/demo_dox_index_open_save cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_open_save.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -o ../bin/demo_dox_index_open_save -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_dox_index_open_save make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_profile_profile_seq_frac_score make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -c /<>/demos/dox/align_profile/profile_seq_frac_score.cpp In file included from /<>/demos/dox/align_profile/profile_seq_frac_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/dox/align_profile/profile_seq_frac_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/align_profile/profile_seq_frac_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/align_profile/profile_seq_frac_score.cpp:2: In file included from /<>/include/seqan/align_profile.h:44: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 8 warnings generated. [ 81%] Linking CXX executable ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -o ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_iterator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o -c /<>/demos/dox/index/iterator.cpp 4 warnings generated. [ 81%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_frac_score cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_frac_score -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_dox_align_profile_profile_seq_frac_score make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_basic_metaprogramming_switch make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -c /<>/demos/dox/basic/metaprogramming_switch.cpp [ 81%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_switch cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -o ../bin/demo_dox_basic_metaprogramming_switch -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_dox_basic_metaprogramming_switch make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_example_iterators make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -c /<>/demos/tutorial/string_sets/example_iterators.cpp In file included from /<>/demos/dox/index/iterator.cpp:1: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/dox/index/iterator.cpp:10:54: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type it(index); ^ [ 81%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_iterators cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -o ../bin/demo_tutorial_string_sets_example_iterators -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_string_sets_example_iterators make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indexed_fasta_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -c /<>/demos/tutorial/indexed_fasta_io/solution1.cpp 1 warning generated. [ 81%] Linking CXX executable ../bin/demo_dox_index_iterator cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o -o ../bin/demo_dox_index_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_dox_index_iterator make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alphabets_assignment_1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -c /<>/demos/tutorial/alphabets/assignment_1_solution.cpp [ 81%] Linking CXX executable ../bin/demo_tutorial_alphabets_assignment_1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_alphabets_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_alphabets_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alphabets_example_bitsPerValue make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o -c /<>/demos/tutorial/alphabets/example_bitsPerValue.cpp [ 81%] Linking CXX executable ../bin/demo_tutorial_alphabets_example_bitsPerValue cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o -o ../bin/demo_tutorial_alphabets_example_bitsPerValue -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_alphabets_example_bitsPerValue make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_blast_io_read_assignment make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -c /<>/demos/tutorial/blast_io/read_assignment.cpp In file included from /<>/demos/tutorial/indexed_fasta_io/solution1.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/indexed_fasta_io/solution1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/indexed_fasta_io/solution1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/indexed_fasta_io/solution1.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 81%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_indexed_fasta_io_solution1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -c /<>/demos/tutorial/seed_and_extend/solution4.cpp In file included from /<>/demos/tutorial/blast_io/read_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:54: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/blast_io/read_assignment.cpp:21:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn file(argv[1]); ^ In file included from /<>/demos/tutorial/blast_io/read_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:56: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/blast_io/read_assignment.cpp:21:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn file(argv[1]); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/blast_io/read_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:56: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/blast_io/read_assignment.cpp:21:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn file(argv[1]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/blast_io/read_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:54: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/blast_io/read_assignment.cpp:21:34: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileIn file(argv[1]); ^ In file included from /<>/demos/tutorial/blast_io/read_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:54: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/blast/blast_tabular_in.h:185:14: note: in instantiation of function template specialization 'seqan::startsWith, char [2]>' requested here return (!startsWith(context._lineBuffer, "#") && !empty(context._lineBuffer)); ^ /<>/include/seqan/blast/blast_tabular_in.h:930:13: note: in instantiation of function template specialization 'seqan::_onMatch, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here if (_onMatch(context, BlastTabular())) ^ /<>/include/seqan/blast/blast_tabular_in.h:941:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here readHeader(context(formattedFile), formattedFile.iter, BlastTabular()); ^ /<>/demos/tutorial/blast_io/read_assignment.cpp:23:5: note: in instantiation of function template specialization 'seqan::readHeader, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here readHeader(file); ^ In file included from /<>/demos/tutorial/blast_io/read_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:54: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/blast/blast_tabular_in.h:286:60: note: in instantiation of function template specialization 'seqan::prefix, long>' requested here context.blastProgram = _programStringToTag(prefix(context.versionString, ^ /<>/include/seqan/blast/blast_tabular_in.h:460:5: note: in instantiation of function template specialization 'seqan::_readCommentLinesImpl, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _readCommentLinesImpl(r, iter, context, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_in.h:716:5: note: in instantiation of function template specialization 'seqan::_readCommentLines, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _readCommentLines(blastRecord, iter, context, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_in.h:889:9: note: in instantiation of function template specialization 'seqan::_readRecordWithCommentLines, std::char_traits >, seqan::StreamIterator > >, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _readRecordWithCommentLines(blastRecord, iter, context, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_in.h:898:5: note: in instantiation of function template specialization 'seqan::readRecord, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here readRecord(blastRecord, formattedFile.iter, context(formattedFile), BlastTabular()); ^ /<>/demos/tutorial/blast_io/read_assignment.cpp:30:9: note: in instantiation of function template specialization 'seqan::readRecord, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >' requested here readRecord(record, file); ^ [ 81%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_seed_and_extend_solution4 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_solution_2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -c /<>/demos/tutorial/a_first_example/solution_2.cpp [ 81%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_a_first_example_solution_2 make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alphabets_assignment_1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -c /<>/demos/tutorial/alphabets/assignment_1.cpp [ 81%] Linking CXX executable ../bin/demo_tutorial_alphabets_assignment_1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -o ../bin/demo_tutorial_alphabets_assignment_1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_alphabets_assignment_1 make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alphabets_example_size make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o -c /<>/demos/tutorial/alphabets/example_size.cpp [ 82%] Linking CXX executable ../bin/demo_tutorial_alphabets_example_size cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_example_size.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o -o ../bin/demo_tutorial_alphabets_example_size -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target demo_tutorial_alphabets_example_size make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_background_and_motivation_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o -c /<>/demos/tutorial/background_and_motivation/example.cpp [ 82%] Linking CXX executable ../bin/demo_tutorial_background_and_motivation_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_background_and_motivation_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o -o ../bin/demo_tutorial_background_and_motivation_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target demo_tutorial_background_and_motivation_example make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basics_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -c /<>/demos/tutorial/basics/base.cpp 6 warnings generated. [ 82%] Linking CXX executable ../bin/demo_tutorial_blast_io_read_assignment cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -o ../bin/demo_tutorial_blast_io_read_assignment -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target demo_tutorial_blast_io_read_assignment make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_bed_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o -c /<>/demos/tutorial/bed_io/solution1.cpp [ 82%] Linking CXX executable ../bin/demo_tutorial_basics_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -o ../bin/demo_tutorial_basics_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target demo_tutorial_basics_base make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_gff_and_gtf_io_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o -c /<>/demos/tutorial/gff_and_gtf_io/base.cpp In file included from /<>/demos/tutorial/bed_io/solution1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution1.cpp:9:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ In file included from /<>/demos/tutorial/bed_io/solution1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution1.cpp:9:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/bed_io/solution1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution1.cpp:9:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/bed_io/solution1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bed_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution1.cpp:9:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/bed_io/solution1.cpp:1: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/bed_io/solution1.cpp:9:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedIn, toCString(getAbsolutePath("demos/tutorial/bed_io/example.bed")))) ^ [ 84%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target demo_tutorial_gff_and_gtf_io_base make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_index_search make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -c /<>/demos/tutorial/index_iterators/index_search.cpp 5 warnings generated. [ 84%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o -o ../bin/demo_tutorial_bed_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target demo_tutorial_bed_io_solution1 make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_consensus_alignment_without_positions make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o -c /<>/demos/tutorial/consensus_alignment/without_positions.cpp In file included from /<>/demos/tutorial/index_iterators/index_search.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/demos/tutorial/index_iterators/index_search.cpp:17:40: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ 1 warning generated. [ 84%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_search cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -o ../bin/demo_tutorial_index_iterators_index_search -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target demo_tutorial_index_iterators_index_search make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_file_io_overview_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o -c /<>/demos/tutorial/file_io_overview/example1.cpp In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/file_io_overview/example1.cpp:2: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/file_io_overview/example1.cpp:2: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/file_io_overview/example1.cpp:2: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/file_io_overview/example1.cpp:2: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:4: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/find_pigeonhole.h:518:35: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here indexShape(host(pattern)) = pattern.shape; ^ /<>/include/seqan/consensus/overlap_info_computation.h:370:5: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, double, void>' requested here _patternInit(filterPattern, maxErrorRate); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/tutorial/consensus_alignment/without_positions.cpp:29:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:4: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_pigeonhole.h:463:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/tutorial/consensus_alignment/without_positions.cpp:29:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); ^ /<>/include/seqan/consensus/consensus_builder.h:384:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag, seqan::Score > >' requested here buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); ^ /<>/include/seqan/consensus/consensus_aligner.h:170:17: note: in instantiation of member function 'seqan::ConsensusBuilder_ > >::run' requested here consBuilder.run(store, overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/tutorial/consensus_alignment/without_positions.cpp:29:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/tutorial/consensus_alignment/without_positions.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:145:13: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); ^ /<>/demos/tutorial/consensus_alignment/without_positions.cpp:29:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ 4 warnings generated. [ 84%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o -o ../bin/demo_tutorial_file_io_overview_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target demo_tutorial_file_io_overview_example1 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_own_function make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/example_with_own_function.cpp [ 84%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_own_function cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example_with_own_function -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target demo_tutorial_parsing_command_line_arguments_example_with_own_function make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_find_index_multiple make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o -c /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::Owner > >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:118:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::Owner > >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:889:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:135:9: note: in instantiation of function template specialization 'seqan::assignValue >, seqan::Owner > >, seqan::IndexEsa >, seqan::Index >, seqan::Owner > >, seqan::IndexEsa > >' requested here assignValue(*this, value_); ^ /<>/include/seqan/index/find_index.h:89:39: note: in instantiation of member function 'seqan::Holder >, seqan::Owner > >, seqan::IndexEsa >, seqan::Tag >::Holder' requested here Finder(TIndex const &_index): index(_index), data_iterator(), data_length(0) ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:18:32: note: in instantiation of member function 'seqan::Finder >, seqan::Owner > >, seqan::IndexEsa >, const seqan::Tag >::Finder' requested here Finder > finder(haystacks); ^ 8 warnings generated. [ 85%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_without_positions cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_without_positions -lrt -lz -lbz2 In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "be")) ^ In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "be")) ^ In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "be")) ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target demo_tutorial_consensus_alignment_without_positions make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/DependInfo.cmake --color= In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "be")) ^ In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "be")) ^ Scanning dependencies of target demo_tutorial_pattern_matching_assignment1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o -c /<>/demos/tutorial/pattern_matching/assignment1_solution.cpp In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "be")) ^ In file included from /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:658:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::Skew7>' requested here return indexCreate(index, fibre, typename DefaultIndexCreator, Tag const>::Type()); ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/find_index_esa.h:60:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/find_index_multiple.cpp:23:12: note: in instantiation of function template specialization 'seqan::find >, seqan::Owner > >, seqan::IndexEsa, const seqan::Tag, char [3]>' requested here while (find(finder, "be")) ^ [ 85%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target demo_tutorial_pattern_matching_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_vcf_io_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o -c /<>/demos/tutorial/vcf_io/example1.cpp In file included from /<>/demos/tutorial/vcf_io/example1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/example1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ In file included from /<>/demos/tutorial/vcf_io/example1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/example1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/vcf_io/example1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:48: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/example1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/vcf_io/example1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/vcf_io/example1.cpp:8:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here VcfFileIn vcfIn(toCString(getAbsolutePath("demos/tutorial/vcf_io/example.vcf"))); ^ In file included from /<>/demos/tutorial/vcf_io/example1.cpp:1: In file included from /<>/include/seqan/vcf_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/include/seqan/vcf_io/vcf_file.h:198:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >' requested here readHeader(header, context(file), file.iter, file.format); ^ /<>/demos/tutorial/vcf_io/example1.cpp:16:5: note: in instantiation of function template specialization 'seqan::readHeader' requested here readHeader(header, vcfIn); ^ 5 warnings generated. [ 85%] Linking CXX executable ../bin/demo_tutorial_vcf_io_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o -o ../bin/demo_tutorial_vcf_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target demo_tutorial_vcf_io_example1 make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_file_io_overview_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -c /<>/demos/tutorial/file_io_overview/solution3.cpp In file included from /<>/demos/tutorial/file_io_overview/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/file_io_overview/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/file_io_overview/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/file_io_overview/solution3.cpp:1: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 8 warnings generated. [ 85%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_index_multiple cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_index_multiple -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target demo_tutorial_pattern_matching_find_index_multiple make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_assignment_1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -c /<>/demos/tutorial/iterators/assignment_1_solution.cpp [ 85%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target demo_tutorial_iterators_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_fragment_store_access_aligned_reads make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o -c /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here loadContigs(store, toCString(fastaFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/fragment_store/access_aligned_reads.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here loadContigs(store, toCString(fastaFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 4 warnings generated. [ 86%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_file_io_overview_solution3 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_assignment_6_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o -c /<>/demos/tutorial/sequences/assignment_6_solution.cpp [ 86%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_6_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/tutorial/sequences/assignment_6_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_6_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_sequences_assignment_6_solution make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_fragment_store_access_aligned_reads2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -c /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here loadContigs(store, toCString(fastaFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/fragment_store/access_aligned_reads2.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here loadContigs(store, toCString(fastaFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 86%] Linking CXX executable ../bin/demo_tutorial_fragment_store_access_aligned_reads cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o -o ../bin/demo_tutorial_fragment_store_access_aligned_reads -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_fragment_store_access_aligned_reads make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_fragment_store_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o -c /<>/demos/tutorial/fragment_store/base.cpp In file included from /<>/demos/tutorial/fragment_store/base.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/fragment_store/base.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/fragment_store/base.cpp:2: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/fragment_store/base.cpp:2: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/fragment_store/base.cpp:2: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/demos/tutorial/fragment_store/base.cpp:13:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ 5 warnings generated. [ 86%] Linking CXX executable ../bin/demo_tutorial_fragment_store_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o -o ../bin/demo_tutorial_fragment_store_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_fragment_store_base make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_banded make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_banded.cpp 6 warnings generated. [ 86%] Linking CXX executable ../bin/demo_tutorial_fragment_store_access_aligned_reads2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -o ../bin/demo_tutorial_fragment_store_access_aligned_reads2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_fragment_store_access_aligned_reads2 make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_fragment_store_display_aligned_reads make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o -c /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp In file included from /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 86%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_banded cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/tutorial/pairwise_sequence_alignment/alignment_banded.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_banded -lrt -lz -lbz2 In file included from /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_banded make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_sequence_iterator_demo make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -c /<>/demos/tutorial/iterators/sequence_iterator_demo.cpp In file included from /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here loadContigs(store, toCString(fastaFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1035:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, loadSeqs); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/demos/tutorial/fragment_store/display_aligned_reads.cpp:16:5: note: in instantiation of function template specialization 'seqan::loadContigs, char *>' requested here loadContigs(store, toCString(fastaFileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 86%] Linking CXX executable ../bin/demo_tutorial_iterators_sequence_iterator_demo cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -o ../bin/demo_tutorial_iterators_sequence_iterator_demo -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_iterators_sequence_iterator_demo make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alphabets_example_ordValue make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o -c /<>/demos/tutorial/alphabets/example_ordValue.cpp [ 86%] Linking CXX executable ../bin/demo_tutorial_alphabets_example_ordValue cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/tutorial/alphabets/example_ordValue.cpp.o -o ../bin/demo_tutorial_alphabets_example_ordValue -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_alphabets_example_ordValue make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_generic_programming_example_hashing make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o -c /<>/demos/tutorial/generic_programming/example_hashing.cpp [ 86%] Linking CXX executable ../bin/demo_tutorial_generic_programming_example_hashing cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o -o ../bin/demo_tutorial_generic_programming_example_hashing -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_generic_programming_example_hashing make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_index.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_find_finder_index make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o -c /<>/demos/dox/find/finder_index.cpp In file included from /<>/demos/dox/find/finder_index.cpp:1: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/index/find_index.h:277:34: note: in implicit copy assignment operator for 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here hostIterator(finder) = finder.range.i1; ^ /<>/demos/dox/find/finder_index.cpp:12:12: note: in instantiation of function template specialization 'seqan::find >, seqan::FMIndex >, const seqan::Tag, char [2]>' requested here while (find(finder, "y")) ^ In file included from /<>/demos/dox/find/finder_index.cpp:1: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/index/find_index.h:277:34: note: in implicit copy assignment operator for 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' first required here hostIterator(finder) = finder.range.i1; ^ /<>/demos/dox/find/finder_index.cpp:12:12: note: in instantiation of function template specialization 'seqan::find >, seqan::FMIndex >, const seqan::Tag, char [2]>' requested here while (find(finder, "y")) ^ In file included from /<>/demos/dox/find/finder_index.cpp:1: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_fm.h:407:59: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, void, seqan::FMIndexConfig, const seqan::Tag, char [2]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/find/finder_index.cpp:12:12: note: in instantiation of function template specialization 'seqan::find >, seqan::FMIndex >, const seqan::Tag, char [2]>' requested here while (find(finder, "y")) ^ In file included from /<>/demos/dox/find/finder_index.cpp:1: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_fm.h:407:59: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, void, seqan::FMIndexConfig, const seqan::Tag, char [2]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/find/finder_index.cpp:12:12: note: in instantiation of function template specialization 'seqan::find >, seqan::FMIndex >, const seqan::Tag, char [2]>' requested here while (find(finder, "y")) ^ In file included from /<>/demos/dox/find/finder_index.cpp:1: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_fm.h:407:59: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, void, seqan::FMIndexConfig, const seqan::Tag, char [2]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/find/finder_index.cpp:12:12: note: in instantiation of function template specialization 'seqan::find >, seqan::FMIndex >, const seqan::Tag, char [2]>' requested here while (find(finder, "y")) ^ In file included from /<>/demos/dox/find/finder_index.cpp:1: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, void, seqan::FMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_fm.h:407:59: note: in instantiation of member function 'seqan::Iter >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here typename Iterator >::Type it(index); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, void, seqan::FMIndexConfig, const seqan::Tag, char [2]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/dox/find/finder_index.cpp:12:12: note: in instantiation of function template specialization 'seqan::find >, seqan::FMIndex >, const seqan::Tag, char [2]>' requested here while (find(finder, "y")) ^ 6 warnings generated. [ 86%] Linking CXX executable ../bin/demo_tutorial_fragment_store_display_aligned_reads cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o -o ../bin/demo_tutorial_fragment_store_display_aligned_reads -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_fragment_store_display_aligned_reads make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_genome_annotations_assignment_1_hint make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -c /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:14:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, file); ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:4: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/demos/tutorial/genome_annotations/assignment_1_hint.cpp:17:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ 6 warnings generated. [ 86%] Linking CXX executable ../bin/demo_dox_find_finder_index cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o -o ../bin/demo_dox_find_finder_index -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_dox_find_finder_index make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -c /<>/demos/tutorial/index_iterators/iterator_solution2.cpp In file included from /<>/demos/tutorial/index_iterators/iterator_solution2.cpp:2: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/iterator_solution2.cpp:10:54: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type it(index); ^ 8 warnings generated. [ 86%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_hint cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_hint -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_genome_annotations_assignment_1_hint make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_example_comparisons make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -c /<>/demos/tutorial/sequences/example_comparisons.cpp 1 warning generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_iterator_solution2 make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o -c /<>/demos/tutorial/iterators/base.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_sequences_example_comparisons cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -o ../bin/demo_tutorial_sequences_example_comparisons -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_sequences_example_comparisons make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_genome_annotations_assignment_3_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o -c /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_iterators_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o -o ../bin/demo_tutorial_iterators_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_iterators_base make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_genome_annotations_assignment_1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o -c /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:14:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, file); ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:4: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/demos/tutorial/genome_annotations/assignment_3_solution.cpp:17:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:10:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:10:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:13:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, file); ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:4: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/demos/tutorial/genome_annotations/assignment_1_solution.cpp:16:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ 8 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_3_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_3_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_genome_annotations_assignment_3_solution make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_genome_annotations_assignment_4_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o -c /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp 8 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_genome_annotations_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_gff_and_gtf_io_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -c /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp In file included from /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/demos/tutorial/gff_and_gtf_io/solution2.cpp:13:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffIn, toCString(file))) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:11:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn file(toCString(fileName)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:14:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(store, file); ^ In file included from /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:4: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/include/seqan/store/store_all.h:591:12: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here return Iter, TIterSpec>(store); ^ /<>/demos/tutorial/genome_annotations/assignment_4_solution.cpp:17:10: note: in instantiation of function template specialization 'seqan::begin, void, seqan::AnnotationTree >' requested here it = begin(store, AnnotationTree<>()); ^ 6 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_gff_and_gtf_io_solution2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_sequence_count_characters make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_sequence/count_characters.cpp [ 87%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_count_characters cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_count_characters -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_UNUSED_shape_hash_next make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -c /<>/demos/dox/index/UNUSED_shape_hash_next.cpp 8 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_4_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_4_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_genome_annotations_assignment_4_solution make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_graph_graph_hmm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -c /<>/demos/tutorial/graph/graph_hmm.cpp [ 87%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape_hash_next cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -o ../bin/demo_dox_index_UNUSED_shape_hash_next -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_dox_index_UNUSED_shape_hash_next make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -c /<>/demos/tutorial/index_iterators/iterator_solution3.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_graph_graph_hmm cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_hmm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -o ../bin/demo_tutorial_graph_graph_hmm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_graph_graph_hmm make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_graph_solution_1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -c /<>/demos/tutorial/graph/solution_1.cpp In file included from /<>/demos/tutorial/index_iterators/iterator_solution3.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/iterator_solution3.cpp:14:63: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here typename Iterator > >::Type it(index); ^ /<>/demos/tutorial/index_iterators/iterator_solution3.cpp:34:5: note: in instantiation of function template specialization 'constrainedDFS >' requested here constrainedDFS >(); ^ [ 87%] Linking CXX executable ../bin/demo_tutorial_graph_solution_1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_solution_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -o ../bin/demo_tutorial_graph_solution_1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_graph_solution_1 make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignment_scoring_scheme_simple make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o -c /<>/demos/tutorial/alignment/scoring_scheme_simple.cpp 1 warning generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_iterator_solution3 make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_seeds_seeds_chaining make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -c /<>/demos/dox/seeds/seeds_chaining.cpp In file included from /<>/demos/dox/seeds/seeds_chaining.cpp:2: In file included from /<>/include/seqan/seeds.h:49: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap *, long, seqan::Triple, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop *, long, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4867:12: note: in instantiation of function template specialization 'std::__sort *, __gnu_cxx::__ops::_Iter_less_iter>' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); ^ /<>/include/seqan/seeds/seeds_global_chaining.h:170:10: note: in instantiation of function template specialization 'std::sort *>' requested here std::sort(begin(intervalPoints, Standard()), end(intervalPoints, Standard())); ^ /<>/demos/dox/seeds/seeds_chaining.cpp:18:5: note: in instantiation of function template specialization 'seqan::chainSeedsGlobally, seqan::DefaultSeedConfig>, seqan::Alloc >, seqan::Seed, seqan::DefaultSeedConfig>, seqan::Tag >' requested here chainSeedsGlobally(chain, seedSet, SparseChaining()); ^ 1 warning generated. [ 87%] Linking CXX executable ../bin/demo_dox_seeds_seeds_chaining cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_chaining.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -o ../bin/demo_dox_seeds_seeds_chaining -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_dox_seeds_seeds_chaining make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/DependInfo.cmake --color= [ 87%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_simple cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_simple -lrt -lz -lbz2 Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_alignment_scoring_scheme_simple make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_assignment4_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/assignment4_solution.cpp In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:21: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here finger1 = col_; ^ /<>/include/seqan/align/global_alignment_specialized.h:95:12: note: in instantiation of function template specialization 'seqan::_globalAlignment, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return _globalAlignment(row(align, 0), row(align, 1), algorithmTag); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:26:17: note: in instantiation of function template specialization 'seqan::globalAlignment, seqan::Alloc >, seqan::Tag >' requested here int score = globalAlignment(align, MyersHirschberg()); ^ In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:21: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here finger1 = col_; ^ /<>/include/seqan/align/global_alignment_specialized.h:95:12: note: in instantiation of function template specialization 'seqan::_globalAlignment, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return _globalAlignment(row(align, 0), row(align, 1), algorithmTag); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:26:17: note: in instantiation of function template specialization 'seqan::globalAlignment, seqan::Alloc >, seqan::Tag >' requested here int score = globalAlignment(align, MyersHirschberg()); ^ 2 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_index_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -c /<>/demos/tutorial/index_iterators/index_assignment1.cpp In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:453:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment1.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::Owner > >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::Owner > >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/index_assignment1.cpp:19:65: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator > >::Type myIterator(myIndex); ^ [ 87%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment4_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment4_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_parsing_command_line_arguments_assignment4_solution make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_index_assignment2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -c /<>/demos/tutorial/index_iterators/index_assignment2.cpp In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 21 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_shims.h:726:16: note: in instantiation of function template specialization 'seqan::indexCreate >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here return indexCreate(index, fibre); // and create table ^ /<>/include/seqan/index/index_esa_base.h:461:9: note: in instantiation of function template specialization 'seqan::indexRequire >, seqan::Owner > >, seqan::IndexEsa, seqan::FibreSA_>' requested here indexRequire(index, EsaSA()); ^ /<>/include/seqan/index/index_esa_stree.h:452:13: note: in instantiation of function template specialization 'seqan::_indexRequireBottomUpIteration >, seqan::Owner > >, void>' requested here _indexRequireBottomUpIteration(_index); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ In file included from /<>/demos/tutorial/index_iterators/index_assignment2.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear >, seqan::Owner > >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin >, seqan::Owner > >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_algs_multi.h:106:13: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/tutorial/index_iterators/index_assignment2.cpp:18:36: note: in instantiation of member function 'seqan::Iter >, seqan::Owner > >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myIterator(myIndex); ^ 8 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -o ../bin/demo_tutorial_index_iterators_index_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_index_assignment1 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_index_bidirectional_search make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o -c /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp In file included from /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/index_bidirectional_stree.h:114:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > > >::Iter' requested here Iter > > > iter(index); ^ In file included from /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/index_bidirectional_stree.h:114:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > > >::Iter' requested here Iter > > > iter(index); ^ In file included from /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 17 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/index_bidirectional_stree.h:114:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > > >::Iter' requested here Iter > > > iter(index); ^ In file included from /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: In file included from /<>/include/seqan/index.h:41: In file included from /<>/include/seqan/sequence.h:74: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 19 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_fm_stree.h:183:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::FMIndex >, seqan::FibreSALF_>' requested here indexRequire(index, FibreSALF()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, void, seqan::FastFMIndexConfig >' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/include/seqan/index/index_bidirectional_stree.h:114:9: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::FMIndex > >, seqan::VSTree > > >::Iter' requested here fwdIter(_index.fwd), ^ /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:13:49: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::BidirectionalIndex > > >, seqan::VSTree > > >::Iter' requested here Iter > > > iter(index); ^ In file included from /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: In file included from /<>/include/seqan/index.h:172: /<>/include/seqan/index/index_fm_stree.h:70:5: warning: definition of implicit copy constructor for 'HistoryStackFM_ >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator=(HistoryStackFM_ const & _origin) ^ /<>/include/seqan/sequence/string_base.h:1342:26: note: in implicit copy constructor for 'seqan::HistoryStackFM_ >' first required here TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value ^ /<>/include/seqan/sequence/string_base.h:1366:42: note: in instantiation of function template specialization 'seqan::AppendValueToString_ >::appendValue_ >, seqan::Alloc >, seqan::HistoryStackFM_ > &>' requested here AppendValueToString_ >::appendValue_(me, std::forward(_value)); ^ /<>/include/seqan/sequence/sequence_interface.h:937:5: note: in instantiation of function template specialization 'seqan::appendValue >, seqan::Alloc, seqan::HistoryStackFM_ > &, seqan::TagGenerous_>' requested here appendValue(std::forward(me), std::forward(_value), typename DefaultOverflowImplicit::Type()); ^ /<>/include/seqan/index/index_fm_stree.h:494:5: note: in instantiation of function template specialization 'seqan::appendValue >, seqan::Alloc > &, seqan::HistoryStackFM_ > &>' requested here appendValue(it.history, h); ^ /<>/include/seqan/index/index_bifm_stree.h:92:5: note: in instantiation of function template specialization 'seqan::_historyPush, seqan::Alloc >, void, seqan::FastFMIndexConfig, seqan::Preorder>' requested here _historyPush(_iter(it, TDirection())); ^ /<>/include/seqan/index/index_bidirectional_stree.h:271:12: note: in instantiation of function template specialization 'seqan::_goDownString, seqan::Alloc >, void, seqan::FastFMIndexConfig, seqan::ParentLinks, seqan::String, seqan::Alloc >, unsigned long, seqan::Tag >' requested here return _goDownString(it, obj, dummy, TDirection()); ^ /<>/include/seqan/index/index_bidirectional_stree.h:300:12: note: in instantiation of function template specialization 'seqan::_goDownObject, seqan::Alloc >, seqan::FMIndex >, seqan::ParentLinks, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return _goDownObject(it, obj, typename IsSequence::Type(), Fwd()); ^ /<>/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:1: note: in instantiation of function template specialization 'seqan::goDown, seqan::Alloc >, seqan::FMIndex >, seqan::ParentLinks, seqan::String, seqan::Alloc > >' requested here goDown(iter, DnaString("TTTC"), Fwd()); // search CTTT in the prefix trie ^ 8 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_assignment2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -o ../bin/demo_tutorial_index_iterators_index_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_index_assignment2 make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_consensus_alignment_with_positions make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -c /<>/demos/tutorial/consensus_alignment/with_positions.cpp 5 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_bidirectional_search cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o -o ../bin/demo_tutorial_index_iterators_index_bidirectional_search -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_index_bidirectional_search make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_index_search2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o -c /<>/demos/tutorial/index_iterators/index_search2.cpp In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:4: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:4: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:4: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:4: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:5: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/find_pigeonhole.h:518:35: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here indexShape(host(pattern)) = pattern.shape; ^ /<>/include/seqan/consensus/overlap_info_computation.h:370:5: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, double, void>' requested here _patternInit(filterPattern, maxErrorRate); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/tutorial/consensus_alignment/with_positions.cpp:51:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:5: In file included from /<>/include/seqan/consensus.h:65: In file included from /<>/include/seqan/consensus/overlap_info_computation.h:38: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_pigeonhole.h:463:37: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/consensus/overlap_info_computation.h:334:5: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(infos, readIDs); ^ /<>/include/seqan/consensus/overlap_info_computation.h:163:9: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::buildAllToAllOverlapInfos' requested here buildAllToAllOverlapInfos(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner.h:160:19: note: in instantiation of member function 'seqan::OverlapInfoComputation_ > >::run' requested here ovlInfoHelper.run(overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/tutorial/consensus_alignment/with_positions.cpp:51:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:4: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent >, unsigned int, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag > >, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, outGraph, FractionalScore() ); ^ /<>/include/seqan/consensus/consensus_builder.h:384:5: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::InfixSegment>, seqan::Dependent > >, unsigned int, seqan::Tag, seqan::Score > >' requested here buildAlignmentGraph(fragments, scores, inGraph, msaScoringScheme, ReScore()); ^ /<>/include/seqan/consensus/consensus_aligner.h:170:17: note: in instantiation of member function 'seqan::ConsensusBuilder_ > >::run' requested here consBuilder.run(store, overlapInfos); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:141:13: note: in instantiation of member function 'seqan::ConsensusAligner_ > >::run' requested here aligner.run(); ^ /<>/demos/tutorial/consensus_alignment/with_positions.cpp:51:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ In file included from /<>/demos/tutorial/index_iterators/index_search2.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/demos/tutorial/index_iterators/index_search2.cpp:13:40: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator >::Type it(index); ^ In file included from /<>/demos/tutorial/consensus_alignment/with_positions.cpp:4: In file included from /<>/include/seqan/store.h:37: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, unsigned int, void>, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/realign/realign_base.h:418:29: note: in instantiation of function template specialization 'seqan::prefix, unsigned int, void>, seqan::Alloc >, unsigned int>' requested here append(profileStr2, prefix(profileStr, info.aliBeginPos)); ^ /<>/include/seqan/realign/realign_base.h:1138:9: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::_subtractReadAlignment' requested here _subtractReadAlignment(windowBegin, windowEnd, profilePart, info, *it, it - begin(contigAlignedReads, ^ /<>/include/seqan/realign/realign_base.h:685:15: note: in instantiation of member function 'seqan::AnsonMyersRealignmentRound_ > >::run' requested here round.run(windowBegin, windowEnd); ^ /<>/include/seqan/realign/realign_base.h:1801:15: note: in instantiation of member function 'seqan::AnsonMyersRealigner_ > >::run' requested here realigner.run(contigID, windowBegin, windowEnd); ^ /<>/include/seqan/consensus/consensus_aligner_interface.h:145:13: note: in instantiation of function template specialization 'seqan::reAlignment >' requested here reAlignment(store, contigID, /*method=*/1, /*bandwidth=*/10, /*includeReference=*/false); ^ /<>/demos/tutorial/consensus_alignment/with_positions.cpp:51:5: note: in instantiation of function template specialization 'seqan::consensusAlignment >' requested here consensusAlignment(store, options); ^ 1 warning generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_search2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o -o ../bin/demo_tutorial_index_iterators_index_search2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_index_search2 make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_arg_parse_argument_parser make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o -c /<>/demos/dox/arg_parse/argument_parser.cpp [ 87%] Linking CXX executable ../bin/demo_dox_arg_parse_argument_parser cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_arg_parse_argument_parser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o -o ../bin/demo_dox_arg_parse_argument_parser -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_dox_arg_parse_argument_parser make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_modreverse make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -c /<>/demos/tutorial/modifiers/modreverse.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_modifiers_modreverse cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modreverse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -o ../bin/demo_tutorial_modifiers_modreverse -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_modifiers_modreverse make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_graph_algorithms_bellman_ford_algorithm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -c /<>/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp [ 87%] Linking CXX executable ../bin/demo_dox_graph_algorithms_bellman_ford_algorithm cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_bellman_ford_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_dox_graph_algorithms_bellman_ford_algorithm make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterators_iterator_assignment2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o -c /<>/demos/tutorial/index_iterators/iterator_assignment2.cpp 8 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_with_positions cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_with_positions -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_consensus_alignment_with_positions make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indices_assignment_2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -c /<>/demos/tutorial/indices/assignment_2.cpp In file included from /<>/demos/tutorial/index_iterators/iterator_assignment2.cpp:2: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_esa_stree.h:1491:9: note: in instantiation of function template specialization 'seqan::_historyClear >, seqan::IndexEsa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot >, seqan::IndexEsa, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/demos/tutorial/index_iterators/iterator_assignment2.cpp:10:52: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > > >::Iter' requested here Iterator< TIndex, TopDown > >::Type it(index); ^ 1 warning generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_assignment2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/tutorial/index_iterators/iterator_assignment2.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_iterator_assignment2 make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_indices_fm_index make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o -c /<>/demos/tutorial/indices/fm_index.cpp In file included from /<>/demos/tutorial/indices/assignment_2.cpp:2: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:419:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::IndexEsa >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::IndexEsa >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::IndexEsa > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::IndexEsa >, seqan::Index, seqan::Alloc >, seqan::IndexEsa > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::IndexEsa > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::IndexEsa > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container, seqan::Alloc >, seqan::IndexEsa, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_esa.h:59:38: note: in instantiation of function template specialization 'seqan::haystack, seqan::Alloc >, seqan::IndexEsa >, const seqan::Tag > >' requested here Index &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex, seqan::Alloc >, seqan::IndexEsa, const seqan::Tag, char [6]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/indices/assignment_2.cpp:12:12: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::IndexEsa, const seqan::Tag, char [6]>' requested here while (find(esaFinder, "TATAA")) ^ 1 warning generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_indices_assignment_2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_assignment_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -o ../bin/demo_tutorial_indices_assignment_2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_indices_assignment_2 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_assignment_1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o -c /<>/demos/tutorial/iterators/assignment_1.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_indices_fm_index cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_fm_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o -o ../bin/demo_tutorial_indices_fm_index -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_indices_fm_index make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_assignment_2_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o -c /<>/demos/tutorial/iterators/assignment_2_solution.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o -o ../bin/demo_tutorial_iterators_assignment_1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_iterators_assignment_1 make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o -c /<>/demos/tutorial/journaled_set/base.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_2_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_iterators_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_example_online_search make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o -c /<>/demos/tutorial/journaled_set/example_online_search.cpp [ 87%] Linking CXX executable ../bin/demo_tutorial_journaled_set_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o -o ../bin/demo_tutorial_journaled_set_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_journaled_set_base make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o -c /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp In file included from /<>/demos/tutorial/journaled_set/example_online_search.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/journaled_set/example_online_search.cpp:264:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn databaseFile(toCString(seqDatabasePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/journaled_set/example_online_search.cpp:238:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(seqId, sequence, databaseFile); ^ /<>/demos/tutorial/journaled_set/example_online_search.cpp:269:5: note: in instantiation of function template specialization 'loadAndJoin, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::GlobalAlign > >' requested here loadAndJoin(journalSet, databaseFile, joinConfig); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:250:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn databaseFile(toCString(seqDatabasePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:224:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(seqId, sequence, databaseFile); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:255:5: note: in instantiation of function template specialization 'loadAndJoin, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::GlobalAlign > >' requested here loadAndJoin(journalSet, databaseFile, joinConfig); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 87%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_online_search cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/tutorial/journaled_set/example_online_search.cpp.o -o ../bin/demo_tutorial_journaled_set_example_online_search -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_journaled_set_example_online_search make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_struct make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/example_with_struct.cpp 6 warnings generated. [ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_example_online_search_assignment1_hint make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o -c /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp In file included from /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:50:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn databaseFile(toCString(seqDatabasePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:29:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(tempSeqId, tempSeq, databaseFile); ^ /<>/demos/tutorial/journaled_set/example_online_search_assignment1_hint.cpp:56:5: note: in instantiation of function template specialization 'loadAndJoin, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::GlobalAlign > >' requested here loadAndJoin(journalSet, databaseFile, joinConfig); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_online_search_assignment1_hint cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/tutorial/journaled_set/example_online_search_assignment1_hint.cpp.o -o ../bin/demo_tutorial_journaled_set_example_online_search_assignment1_hint -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_journaled_set_example_online_search_assignment1_hint make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_q_gram_index_index_assignment5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -c /<>/demos/tutorial/q_gram_index/index_assignment5.cpp [ 88%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_assignment5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_assignment5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_q_gram_index_index_assignment5 make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -c /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp [ 88%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_struct cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example_with_struct -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_parsing_command_line_arguments_example_with_struct make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_index_supermaxrepeats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o -c /<>/demos/unassigned_or_unused/index_supermaxrepeats.cpp In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:52:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn databaseFile(toCString(seqDatabasePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:29:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(tempSeqId, sequence, databaseFile); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:57:5: note: in instantiation of function template specialization 'loadAndJoin, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::GlobalAlign > >' requested here loadAndJoin(journalSet, databaseFile, joinConfig); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/unassigned_or_unused/index_supermaxrepeats.cpp:3: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_esa_stree.h:2230:19: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here value(it) = typename VertexDescriptor::Type(MinimalCtor()); ^ /<>/include/seqan/index/index_esa_stree.h:2236:9: note: in instantiation of function template specialization 'seqan::_clear >, seqan::IndexEsa >, seqan::BottomUp >' requested here _clear(it); ^ /<>/include/seqan/index/index_esa_stree.h:1605:9: note: in instantiation of function template specialization 'seqan::clear >, seqan::IndexEsa >, seqan::BottomUp >' requested here clear(it); // start in root node with range (0,infty) ^ /<>/include/seqan/index/index_esa_stree.h:453:13: note: in instantiation of function template specialization 'seqan::goBegin >, void, seqan::Postorder>' requested here goBegin(*this); ^ /<>/include/seqan/index/index_esa_algs.h:120:13: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here TBase(_tree), ^ /<>/demos/unassigned_or_unused/index_supermaxrepeats.cpp:18:47: note: in instantiation of member function 'seqan::Iter >, seqan::IndexEsa >, seqan::VSTree > >::Iter' requested here Iterator::Type myRepeatIterator(myIndex, 3); ^ 1 warning generated. [ 88%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_supermaxrepeats cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/unassigned_or_unused/index_supermaxrepeats.cpp.o -o ../bin/demo_unassigned_or_unused_index_supermaxrepeats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_index_supermaxrepeats make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_gaps_example make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -c /<>/demos/dox/align/gaps_example.cpp [ 88%] Linking CXX executable ../bin/demo_dox_align_gaps_example cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_gaps_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -o ../bin/demo_dox_align_gaps_example -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_dox_align_gaps_example make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o -c /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp 6 warnings generated. [ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment1 -lrt -lz -lbz2 In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_assignment1 make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_segment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_sequence_segment make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o -c /<>/demos/dox/sequence/segment.cpp In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:118:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn databaseFile(toCString(seqDatabasePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:92:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(seqId, sequence, databaseFile); ^ /<>/demos/tutorial/journaled_set/solution_online_search_assignment2.cpp:123:5: note: in instantiation of function template specialization 'loadAndJoin, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::GlobalAlign > >' requested here loadAndJoin(journalSet, databaseFile, joinConfig); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ [ 88%] Linking CXX executable ../bin/demo_dox_sequence_segment cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_segment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_segment.dir/dox/sequence/segment.cpp.o -o ../bin/demo_dox_sequence_segment -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_dox_sequence_segment make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_set_solution_online_search_finder make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/tutorial/journaled_set/solution_online_search_finder.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/tutorial/journaled_set/solution_online_search_finder.cpp.o -c /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp In file included from /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:3: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:3: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:3: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:3: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:3: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:209:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn databaseFile(toCString(seqDatabasePath)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:3: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:184:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(seqId, sequence, databaseFile); ^ /<>/demos/tutorial/journaled_set/solution_online_search_finder.cpp:214:5: note: in instantiation of function template specialization 'loadAndJoin, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::GlobalAlign > >' requested here loadAndJoin(journalSet, databaseFile, joinConfig); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_assignment2 make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o -c /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:110: /<>/include/seqan/sequence/string_packed.h:163:14: warning: definition of implicit copy constructor for 'String > >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] String & operator =(String const & source) ^ /<>/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: note: in implicit copy constructor for 'seqan::String > >' first required here class DeltaMapEntry ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit move constructor for 'seqan::DeltaMapEntry' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct *, seqan::DeltaMapEntry >' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct *, seqan::DeltaMapEntry >' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault *, seqan::DeltaMapEntry *, seqan::DeltaMapEntry *>' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1697:5: note: in instantiation of function template specialization 'seqan::_reserveStorage, seqan::Alloc, int, seqan::TagGenerous_>' requested here _reserveStorage(seq, new_capacity, tag); ^ /<>/include/seqan/sequence/sequence_interface.h:1136:12: note: in instantiation of function template specialization 'seqan::reserve, seqan::Alloc, int, seqan::TagGenerous_>' requested here return reserve(std::forward(me), new_capacity, typename DefaultOverflowExplicit::Type()); ^ /<>/include/seqan/journaled_string_tree/delta_map.h:795:9: note: in instantiation of function template specialization 'seqan::reserve, seqan::Alloc > &, int>' requested here reserve(deltaMap._entries, 1); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:5: note: in instantiation of function template specialization 'seqan::insert, seqan::Alloc > >, seqan::Tag, int, int, seqan::String > >, seqan::Tag >' requested here insert(impl::member(jst, JstDeltaMapMember()), srcPos, deltaVal, coverage, TDeltaType()); ^ /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:35:5: note: in instantiation of function template specialization 'seqan::insert, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag, int, int, std::vector >, seqan::Tag >' requested here insert(jst, 1, 3, std::vector{1, 3, 5, 6, 7}, DeltaTypeDel()); ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: In file included from /<>/include/seqan/stream.h:61: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: in instantiation of function template specialization 'seqan::impl::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Myers > > > &>, seqan::SelectFirstProxy_>' requested here impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:282:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Myers > > > &>, seqan::SelectFirstProxy_>' requested here init(traverser, observer, TProxySelector()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:306:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Myers > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &, std::tuple, seqan::Alloc >, seqan::Myers > > > &> >' requested here find(traverser, algorithm, delegate, observer); ^ /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:5: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Myers > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &>' requested here find(trav, ext, delegate); ^ In file included from /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: In file included from /<>/include/seqan/stream.h:61: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here f.setIt = jSetSplitter[jobId]; ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:11: note: in instantiation of function template specialization 'seqan::impl::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here impl::create(buffer); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:5: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here create(me); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::Tag >' requested here init(buffer(me), container(me)); ^ /<>/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:11: note: in instantiation of function template specialization 'seqan::impl::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Myers > > > &>, seqan::SelectFirstProxy_>' requested here impl::init(me, observer, Tag()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:282:5: note: in instantiation of function template specialization 'seqan::init, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, std::tuple, seqan::Alloc >, seqan::Myers > > > &>, seqan::SelectFirstProxy_>' requested here init(traverser, observer, TProxySelector()); ^ /<>/include/seqan/journaled_string_tree/jst_extension_base.h:306:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Myers > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &, std::tuple, seqan::Alloc >, seqan::Myers > > > &> >' requested here find(traverser, algorithm, delegate, observer); ^ /<>/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:49:5: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, void, seqan::JstExtension, seqan::Alloc >, seqan::Myers > >, MatchPrinter, seqan::Alloc >, seqan::DefaultJstConfig, seqan::Alloc > >, seqan::Tag >, seqan::JstTraversalSpec > > &>' requested here find(trav, ext, delegate); ^ 6 warnings generated. [ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_finder cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/tutorial/journaled_set/solution_online_search_finder.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_finder -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_finder make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_metafunctions_assignment1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o -c /<>/demos/tutorial/metafunctions/assignment1_solution.cpp 7 warnings generated. [ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o -o ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 -lrt -lz -lbz2 [ 88%] Linking CXX executable ../bin/demo_tutorial_metafunctions_assignment1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o -o ../bin/demo_tutorial_metafunctions_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_metafunctions_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/depend make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/DependInfo.cmake --color= [ 88%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_metafunctions_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -c /<>/demos/tutorial/metafunctions/base.cpp Scanning dependencies of target demo_tutorial_sequences_example_conversions_move make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o -c /<>/demos/tutorial/sequences/example_conversions_move.cpp [ 88%] Linking CXX executable ../bin/demo_tutorial_metafunctions_base cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_metafunctions_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -o ../bin/demo_tutorial_metafunctions_base -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_metafunctions_base make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp In file included from /<>/demos/tutorial/sequences/example_conversions_move.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequences/example_conversions_move.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequences/example_conversions_move.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequences/example_conversions_move.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ [ 88%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seeds_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o -c /<>/demos/tutorial/seeds/solution1.cpp 4 warnings generated. [ 89%] Linking CXX executable ../bin/demo_tutorial_sequences_example_conversions_move cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o -o ../bin/demo_tutorial_sequences_example_conversions_move -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target demo_tutorial_sequences_example_conversions_move make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_blast_io_write_assignment make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 90%] Building CXX object demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o -c /<>/demos/tutorial/blast_io/write_assignment.cpp In file included from /<>/demos/tutorial/blast_io/write_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:54: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/blast_io/write_assignment.cpp:51:35: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileOut outfile(argv[1]); ^ In file included from /<>/demos/tutorial/blast_io/write_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:54: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/blast_io/write_assignment.cpp:51:35: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, seqan::BlastIOContext, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC> >::FormattedFile' requested here BlastTabularFileOut outfile(argv[1]); ^ [ 90%] Linking CXX executable ../bin/demo_tutorial_seeds_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seeds_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o -o ../bin/demo_tutorial_seeds_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 90%] Built target demo_tutorial_seeds_solution1 make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -c /<>/demos/tutorial/modifiers/assignment1.cpp In file included from /<>/demos/tutorial/blast_io/write_assignment.cpp:4: In file included from /<>/include/seqan/blast.h:54: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/blast/blast_tabular_out.h:266:26: note: in instantiation of function template specialization 'seqan::prefix, long>' requested here write(s, prefix(record.qId, ^ /<>/include/seqan/blast/blast_tabular_out.h:537:17: note: in instantiation of function template specialization 'seqan::_writeField, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, std::__cxx11::basic_string, std::__cxx11::basic_string, unsigned int, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _writeField(stream, context, match, record, *it, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_out.h:654:9: note: in instantiation of function template specialization 'seqan::_writeMatch, std::__cxx11::basic_string, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, unsigned int, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here _writeMatch(stream, context, *it, r, BlastTabular()); ^ /<>/include/seqan/blast/blast_tabular_out.h:664:5: note: in instantiation of function template specialization 'seqan::writeRecord, std::char_traits >, seqan::StreamIterator > >, seqan::Score, seqan::Blosum62_> >, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>' requested here writeRecord(formattedFile.iter, context(formattedFile), r, BlastTabular()); ^ /<>/demos/tutorial/blast_io/write_assignment.cpp:103:9: note: in instantiation of function template specialization 'seqan::writeRecord, seqan::Blosum62_> >, seqan::BlastProgram::DYNAMIC, seqan::BlastTabularSpec::DYNAMIC>, seqan::BlastMatch, seqan::Alloc >, seqan::Tag >, seqan::Gaps, seqan::Alloc >, seqan::Tag >, unsigned int, std::__cxx11::basic_string, std::__cxx11::basic_string, std::vector, std::allocator > >, seqan::String > >, std::__cxx11::basic_string, std::vector, std::allocator > >, std::__cxx11::basic_string, unsigned int>' requested here writeRecord(outfile, r); ^ [ 91%] Linking CXX executable ../bin/demo_tutorial_modifiers_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -o ../bin/demo_tutorial_modifiers_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target demo_tutorial_modifiers_assignment1 make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_assignment1_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -c /<>/demos/tutorial/modifiers/assignment1_solution.cpp [ 91%] Linking CXX executable ../bin/demo_tutorial_modifiers_assignment1_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -o ../bin/demo_tutorial_modifiers_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target demo_tutorial_modifiers_assignment1_solution make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_gff_io_UNUSED_gff_stream_read make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o -c /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp In file included from /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:2: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(argv[1]); ^ In file included from /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(argv[1]); ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(argv[1]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 3 warnings generated. [ 91%] Linking CXX executable ../bin/demo_tutorial_blast_io_write_assignment cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o -o ../bin/demo_tutorial_blast_io_write_assignment -lrt -lz -lbz2 In file included from /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(argv[1]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:2: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(argv[1]); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:2: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/dox/gff_io/UNUSED_gff_stream_read.cpp:20:19: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn gffIn(argv[1]); ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target demo_tutorial_blast_io_write_assignment make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_modview make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o -c /<>/demos/tutorial/modifiers/modview.cpp [ 91%] Linking CXX executable ../bin/demo_tutorial_modifiers_modview cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modview.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o -o ../bin/demo_tutorial_modifiers_modview -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target demo_tutorial_modifiers_modview make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp 6 warnings generated. [ 92%] Linking CXX executable ../bin/demo_dox_gff_io_UNUSED_gff_stream_read cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/dox/gff_io/UNUSED_gff_stream_read.cpp.o -o ../bin/demo_dox_gff_io_UNUSED_gff_stream_read -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target demo_dox_gff_io_UNUSED_gff_stream_read make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_sufarray make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -c /<>/demos/dox/index/sufarray.cpp [ 92%] Linking CXX executable ../bin/demo_dox_index_sufarray cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_sufarray.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -o ../bin/demo_dox_index_sufarray -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target demo_dox_index_sufarray make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_nested make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o -c /<>/demos/tutorial/modifiers/nested.cpp [ 92%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_workflows_knime_node make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o -c /<>/demos/tutorial/workflows/knime_node.cpp [ 92%] Linking CXX executable ../bin/demo_tutorial_modifiers_nested cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_nested.dir/tutorial/modifiers/nested.cpp.o -o ../bin/demo_tutorial_modifiers_nested -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target demo_tutorial_modifiers_nested make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_multiple_sequence_alignment_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o -c /<>/demos/tutorial/multiple_sequence_alignment/assignment1.cpp In file included from /<>/demos/tutorial/workflows/knime_node.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/workflows/knime_node.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/workflows/knime_node.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/workflows/knime_node.cpp:2: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:3: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent >, unsigned long, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:482:9: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, g, FractionalScore()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:568:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, seqan::String >, seqan::Alloc >, seqan::SimpleType, seqan::Score, seqan::Blosum80_> > >' requested here globalMsaAlignment(gAlign, sequenceSet, sequenceNames, msaOpt); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:578:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::Score, seqan::Blosum80_> > >' requested here globalMsaAlignment(gAlign, scoreObject); ^ /<>/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:27:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Tag, seqan::Score, seqan::Blosum80_> > >' requested here globalMsaAlignment(align, Blosum80(-1, -11)); ^ In file included from /<>/demos/tutorial/workflows/knime_node.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/demos/tutorial/workflows/knime_node.cpp:139:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here SeqFileIn seqIn(toCString(options.inputFile)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/workflows/knime_node.cpp:3: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, qual, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:387:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String > >' requested here readRecord(context(file).buffer[0], seqBuffer, context(file).buffer[2], file); ^ /<>/include/seqan/seq_io/sequence_file.h:409:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, qual, file, std::numeric_limits::max()); ^ /<>/demos/tutorial/workflows/knime_node.cpp:150:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, void>' requested here readRecords(ids, seqs, quals, seqIn); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' first required here for(TSize i = 0; i>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:5: note: in instantiation of function template specialization 'seqan::convertAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here convertAlignment(gAlign, align); ^ /<>/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:27:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Tag, seqan::Score, seqan::Blosum80_> > >' requested here globalMsaAlignment(align, Blosum80(-1, -11)); ^ 2 warnings generated. [ 92%] Linking CXX executable ../bin/demo_tutorial_multiple_sequence_alignment_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/tutorial/multiple_sequence_alignment/assignment1.cpp.o -o ../bin/demo_tutorial_multiple_sequence_alignment_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target demo_tutorial_multiple_sequence_alignment_assignment1 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_modifyString make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp 6 warnings generated. [ 93%] Linking CXX executable ../bin/demo_tutorial_workflows_knime_node cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_workflows_knime_node.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o -o ../bin/demo_tutorial_workflows_knime_node -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target demo_tutorial_workflows_knime_node make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_multiple_sequence_alignment_consensus make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o -c /<>/demos/tutorial/multiple_sequence_alignment/consensus.cpp In file included from /<>/demos/tutorial/multiple_sequence_alignment/consensus.cpp:3: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1667:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:21: note: in instantiation of function template specialization 'seqan::findIntervalsExcludeTouching >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, unsigned long, seqan::Pair > >' requested here findIntervalsExcludeTouching(relevant_segments, gs[seq_i_pos],pms[seq_i_pos],node_i); ^ /<>/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, bool, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent >, unsigned long, seqan::TagExactRefinement_>' requested here matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:5: note: in instantiation of function template specialization 'seqan::matchRefinement > >, seqan::Alloc >, seqan::Graph, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag > >, seqan::String, seqan::Alloc >, seqan::Dependent > >' requested here matchRefinement(matches,strSet,outGraph); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:482:9: note: in instantiation of function template specialization 'seqan::buildAlignmentGraph > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, unsigned long, seqan::Tag >' requested here buildAlignmentGraph(matches, scores, g, FractionalScore()); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:568:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::StringSet, seqan::Alloc >, seqan::Dependent > >, seqan::String >, seqan::Alloc >, seqan::SimpleType, seqan::Score > >' requested here globalMsaAlignment(gAlign, sequenceSet, sequenceNames, msaOpt); ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:578:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::Score > >' requested here globalMsaAlignment(gAlign, scoreObject); ^ /<>/demos/tutorial/multiple_sequence_alignment/consensus.cpp:40:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Tag, seqan::Score > >' requested here globalMsaAlignment(align, SimpleScore(5, -3, -1, -3)); ^ In file included from /<>/demos/tutorial/multiple_sequence_alignment/consensus.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: note: in implicit copy assignment operator for 'seqan::Iter, seqan::Alloc >, seqan::Tag >, seqan::GapsIterator > >' first required here for(TSize i = 0; i>/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:5: note: in instantiation of function template specialization 'seqan::convertAlignment, seqan::Alloc >, seqan::Dependent > >, void, const seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here convertAlignment(gAlign, align); ^ /<>/demos/tutorial/multiple_sequence_alignment/consensus.cpp:40:5: note: in instantiation of function template specialization 'seqan::globalMsaAlignment, seqan::Alloc >, seqan::Tag, seqan::Score > >' requested here globalMsaAlignment(align, SimpleScore(5, -3, -1, -3)); ^ [ 93%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_modifyString cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example_with_modifyString -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target demo_tutorial_parsing_command_line_arguments_example_with_modifyString make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/solution2.cpp [ 94%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution2 make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_index_textAt_indexText_saAt_indexRequire make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] Building CXX object demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o -c /<>/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp [ 94%] Linking CXX executable ../bin/demo_dox_index_textAt_indexText_saAt_indexRequire cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/dox/index/textAt_indexText_saAt_indexRequire.cpp.o -o ../bin/demo_dox_index_textAt_indexText_saAt_indexRequire -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target demo_dox_index_textAt_indexText_saAt_indexRequire make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_local make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp 2 warnings generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_multiple_sequence_alignment_consensus cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/tutorial/multiple_sequence_alignment/consensus.cpp.o -o ../bin/demo_tutorial_multiple_sequence_alignment_consensus -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag >' requested here while (nextLocalAlignment(ali2, enumerator)) ^ In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp:34:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag >' requested here while (nextLocalAlignment(ali2, enumerator)) ^ [ 95%] Built target demo_tutorial_multiple_sequence_alignment_consensus make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag >' requested here while (nextLocalAlignment(ali, enumerator) && count < 3) ^ In file included from /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:3: In file included from /<>/include/seqan/align.h:55: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/align/local_alignment_waterman_eggert_impl.h:714:16: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here best_begin = _smithWatermanTrace(gapsH, gapsV, sw_finder.forbidden,iter(sw_finder.matrix,(top(sw_finder.pQ)).id_), score_); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:105:16: note: in instantiation of function template specialization 'seqan::_smithWaterman, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag, int, seqan::Tag >' requested here return _smithWaterman(gapsH, gapsV, enumerator._finder, enumerator._scoringScheme, enumerator._cutoff); ^ /<>/include/seqan/align/local_alignment_enumeration_unbanded.h:117:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag, seqan::String, seqan::Alloc >, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/demos/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp:21:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::String, seqan::Alloc >, seqan::Tag >' requested here while (nextLocalAlignment(ali, enumerator) && count < 3) ^ 2 warnings generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_assignment2_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -c /<>/demos/tutorial/pattern_matching/assignment2_solution.cpp 2 warnings generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_local_assignment1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_example_functionality2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o -c /<>/demos/tutorial/sequences/example_functionality2.cpp [ 95%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment2_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pattern_matching_assignment2_solution make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp In file included from /<>/demos/tutorial/sequences/example_functionality2.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/demos/tutorial/sequences/example_functionality2.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/demos/tutorial/sequences/example_functionality2.cpp:2: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/demos/tutorial/sequences/example_functionality2.cpp:1: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_sequences_example_functionality2 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/tutorial/sequences/example_functionality2.cpp.o -o ../bin/demo_tutorial_sequences_example_functionality2 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_sequences_example_functionality2 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp In file included from /<>/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp:71:23: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' first required here itGapsPattern = begin(gapsPattern); ^ [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp 1 warning generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5 make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_a_first_example_example_tags_for_print make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o -c /<>/demos/tutorial/a_first_example/example_tags_for_print.cpp [ 95%] Linking CXX executable ../bin/demo_tutorial_a_first_example_example_tags_for_print cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o -o ../bin/demo_tutorial_a_first_example_example_tags_for_print -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_a_first_example_example_tags_for_print make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp In file included from /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp:66:23: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' first required here itGapsPattern = begin(gapsPattern); ^ [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/DependInfo.cmake --color= Scanning dependencies of target demo_dox_align_global_alignment_banded make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o -c /<>/demos/dox/align/global_alignment_banded.cpp 1 warning generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp In file included from /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp:66:23: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' first required here itGapsPattern = begin(gapsPattern); ^ [ 95%] Linking CXX executable ../bin/demo_dox_align_global_alignment_banded cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_global_alignment_banded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_global_alignment_banded.dir/dox/align/global_alignment_banded.cpp.o -o ../bin/demo_dox_align_global_alignment_banded -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_dox_align_global_alignment_banded make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o -c /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp In file included from /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp:3: In file included from /<>/include/seqan/align.h:86: /<>/include/seqan/align/gaps_iterator_array.h:91:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Tag >, seqan::GapsIterator > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/demos/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp:66:23: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' first required here itGapsPattern = begin(gapsPattern); ^ 1 warning generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step5 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/pairwise_sequence_alignment/assignment5_step5.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step5 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorial_file_io_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o -c /<>/demos/unassigned_or_unused/tutorial_file_io/example1.cpp [ 95%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_assignment3_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/assignment3_solution.cpp 1 warning generated. [ 95%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step6 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/pairwise_sequence_alignment/assignment5_step6.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step6 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_scores_init_score make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o -c /<>/demos/howto/scores/init_score.cpp [ 95%] Linking CXX executable ../bin/demo_howto_scores_init_score cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_init_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o -o ../bin/demo_howto_scores_init_score -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_howto_scores_init_score make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_assignment6_solution make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/assignment6_solution.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment3_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment3_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_parsing_command_line_arguments_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/example1.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example1_detailed make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o -c /<>/demos/tutorial/parsing_command_line_arguments/example1_detailed.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_parsing_command_line_arguments_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o -c /<>/demos/unassigned_or_unused/tutorials_custim_io/solution1.cpp [ 96%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/unassigned_or_unused/tutorials_custim_io/solution1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution1 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_assignment1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o -c /<>/demos/tutorial/pattern_matching/assignment1.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_simple_rna_seq_interval_tree make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o -c /<>/demos/tutorial/simple_rna_seq/interval_tree.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment1 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment1 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_pattern_matching_assignment1 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_assignment3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o -c /<>/demos/tutorial/pattern_matching/assignment3.cpp In file included from /<>/demos/tutorial/simple_rna_seq/interval_tree.cpp:3: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode > >, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1286:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1363:5: note: in instantiation of function template specialization 'seqan::addInterval > >, seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc >, seqan::IntervalAndCargo > > >' requested here addInterval(itree.g, itree.pm, interval); ^ /<>/demos/tutorial/simple_rna_seq/interval_tree.cpp:42:5: note: in instantiation of function template specialization 'seqan::addInterval >, seqan::IntervalAndCargo > > >' requested here addInterval(tree, interval); ^ 1 warning generated. [ 96%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_interval_tree cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_interval_tree -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_simple_rna_seq_interval_tree make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_q_gram_index_index_qgram make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o -c /<>/demos/tutorial/q_gram_index/index_qgram.cpp In file included from /<>/demos/tutorial/pattern_matching/assignment3.cpp:3: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > >, seqan::Index >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/index/find_index.h:115:16: note: in instantiation of function template specialization 'seqan::value >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.index); ^ /<>/include/seqan/find/find_base.h:904:12: note: in instantiation of function template specialization 'seqan::container >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag >' requested here return container(obj); ^ /<>/include/seqan/index/find_index_qgram.h:75:25: note: in instantiation of function template specialization 'seqan::haystack >, seqan::IndexQGram, seqan::Tag > >, const seqan::Tag > >' requested here TIndex &index = haystack(finder); ^ /<>/include/seqan/index/find_index.h:275:13: note: in instantiation of function template specialization 'seqan::_findFirstIndex >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [5]>' requested here _findFirstIndex(finder, needle(pattern), TSpecFinder()); ^ /<>/demos/tutorial/pattern_matching/assignment3.cpp:17:12: note: in instantiation of function template specialization 'seqan::find >, seqan::IndexQGram, seqan::Tag >, const seqan::Tag, char [5]>' requested here while (find(finder, "tobe")) ^ 1 warning generated. [ 96%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/tutorial/pattern_matching/assignment3.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_pattern_matching_assignment3 make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_bed_io_solution3 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -c /<>/demos/tutorial/bed_io/solution3.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_qgram cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_qgram -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_q_gram_index_index_qgram make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_pattern_matching_find_approx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o -c /<>/demos/tutorial/pattern_matching/find_approx.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution3 cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -o ../bin/demo_tutorial_bed_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_bed_io_solution3 make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/alf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/alf /<>/obj-x86_64-linux-gnu/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= Scanning dependencies of target alf make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/alf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/alf.dir/alf.cpp.o -c /<>/apps/alf/alf.cpp [ 96%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_approx cd /<>/obj-x86_64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wno-unused-parameter -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/tutorial/pattern_matching/find_approx.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_approx -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_pattern_matching_find_approx make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/bs_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/bs_tools /<>/obj-x86_64-linux-gnu/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= Scanning dependencies of target four2three make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ffp-contract=off -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/four2three.dir/four2three.cpp.o -c /<>/apps/bs_tools/four2three.cpp In file included from /<>/apps/alf/alf.cpp:45: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/alf/alf.cpp:46: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/alf/alf.cpp:46: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/alf/alf.cpp:45: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/alf/alf.cpp:46: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/alf/alf.cpp:164:9: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here open(seqFile, toCString(inFile)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/alf/alf.cpp:46: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/apps/alf/alf.cpp:166:9: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void>' requested here readRecords(seqIDs, mySequenceSet, seqFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/alf/alf.cpp:44: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/alignment_free/af_n2.h:189:34: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here itStandardisedKmerCounts = begin(standardisedKmerCounts); ^ /<>/include/seqan/alignment_free/alignment_free_comparison.h:101:5: note: in instantiation of function template specialization 'seqan::_alignmentFreeComparison, seqan::Alloc >, seqan::Owner > > >' requested here _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); ^ /<>/apps/alf/alf.cpp:188:9: note: in instantiation of function template specialization 'seqan::alignmentFreeComparison, seqan::Alloc >, seqan::Owner > >, double, seqan::AFScore >' requested here alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2); ^ In file included from /<>/apps/alf/alf.cpp:44: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/include/seqan/alignment_free/af_n2.h:189:34: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here itStandardisedKmerCounts = begin(standardisedKmerCounts); ^ /<>/include/seqan/alignment_free/alignment_free_comparison.h:101:5: note: in instantiation of function template specialization 'seqan::_alignmentFreeComparison, seqan::Alloc >, seqan::Owner > > >' requested here _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); ^ /<>/apps/alf/alf.cpp:188:9: note: in instantiation of function template specialization 'seqan::alignmentFreeComparison, seqan::Alloc >, seqan::Owner > >, double, seqan::AFScore >' requested here alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2); ^ In file included from /<>/apps/alf/alf.cpp:45: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/alignment_free/kmer_functions.h:723:39: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, unsigned long>' requested here String my_prefix = prefix(word2, my_min); ^ /<>/include/seqan/alignment_free/kmer_functions.h:593:5: note: in instantiation of function template specialization 'seqan::calculatePeriodicity, seqan::Alloc > >' requested here calculatePeriodicity(periodicity1, word1, word2); ^ /<>/include/seqan/alignment_free/af_n2.h:395:29: note: in instantiation of function template specialization 'seqan::calculateCovariance, seqan::Alloc >, seqan::String > >' requested here calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundFrequencies, (len1 + score.kmerSize - 1)); ^ /<>/include/seqan/alignment_free/af_n2.h:179:9: note: in instantiation of function template specialization 'seqan::_standardiseCounts >, seqan::String, seqan::Alloc > >' requested here _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score); ^ /<>/include/seqan/alignment_free/alignment_free_comparison.h:101:5: note: in instantiation of function template specialization 'seqan::_alignmentFreeComparison, seqan::Alloc >, seqan::Owner > > >' requested here _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod); ^ /<>/apps/alf/alf.cpp:188:9: note: in instantiation of function template specialization 'seqan::alignmentFreeComparison, seqan::Alloc >, seqan::Owner > >, double, seqan::AFScore >' requested here alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2); ^ In file included from /<>/apps/bs_tools/four2three.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/bs_tools/four2three.cpp:37: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/bs_tools/four2three.cpp:37: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/four2three.cpp:36: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/bs_tools/four2three.cpp:37: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/apps/bs_tools/four2three.h:41:23: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::SeqFileIn seqFileIn(toCString(options.inputFileName)); ^ /<>/apps/bs_tools/four2three.cpp:146:5: note: in instantiation of function template specialization 'preProcess' requested here preProcess(options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/four2three.cpp:37: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/bs_tools/four2three.h:52:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(id, seq, seqFileIn); ^ /<>/apps/bs_tools/four2three.cpp:146:5: note: in instantiation of function template specialization 'preProcess' requested here preProcess(options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 6 warnings generated. [ 96%] Linking CXX executable ../../bin/four2three cd /<>/obj-x86_64-linux-gnu/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ffp-contract=off -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../bin/four2three -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target four2three make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/bs_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/bs_tools /<>/obj-x86_64-linux-gnu/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= 9 warnings generated. [ 96%] Linking CXX executable ../../bin/alf cd /<>/obj-x86_64-linux-gnu/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../bin/alf -lrt -lz -lbz2 Scanning dependencies of target casbar make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ffp-contract=off -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/casbar.dir/casbar.cpp.o -c /<>/apps/bs_tools/casbar.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target alf make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/bs_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/bs_tools /<>/obj-x86_64-linux-gnu/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= Scanning dependencies of target bisar make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ffp-contract=off -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/bisar.dir/bisar.cpp.o -c /<>/apps/bs_tools/bisar.cpp In file included from /<>/apps/bs_tools/bisar.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/bs_tools/bisar.cpp:39: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/bs_tools/bisar.cpp:39: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/bisar.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/bs_tools/bisar.cpp:39: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/bs_tools/bisar_base.h:21:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFileIn, toCString(fileName))) ^ /<>/apps/bs_tools/bisar.h:996:9: note: in instantiation of function template specialization 'loadReadsCroppedId, seqan::String > >' requested here loadReadsCroppedId(store, options.readFileName); ^ /<>/apps/bs_tools/bisar.cpp:294:9: note: in instantiation of function template specialization 'postProcessMain >' requested here postProcessMain(options, BsNonSimple()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/bisar.cpp:39: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/bs_tools/bisar_base.h:29:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(_id, seq, seqFileIn); ^ /<>/apps/bs_tools/bisar.h:996:9: note: in instantiation of function template specialization 'loadReadsCroppedId, seqan::String > >' requested here loadReadsCroppedId(store, options.readFileName); ^ /<>/apps/bs_tools/bisar.cpp:294:9: note: in instantiation of function template specialization 'postProcessMain >' requested here postProcessMain(options, BsNonSimple()); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/casbar.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/bs_tools/casbar.cpp:43: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/bs_tools/casbar.cpp:43: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/bisar.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/bs_tools/bisar.h:1055:86: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here if ((record.qName[length(record.qName)-2] == '/' && (!empty(currReadName) && prefix(record.qName, length(record.qName)-2) != prefix(currReadName, length(currReadName)-2) )) || ^ /<>/apps/bs_tools/bisar.cpp:294:9: note: in instantiation of function template specialization 'postProcessMain >' requested here postProcessMain(options, BsNonSimple()); ^ In file included from /<>/apps/bs_tools/casbar.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/bs_tools/casbar.cpp:43: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/store/store_io.h:996:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNameList[f]))) ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/apps/bs_tools/casbar.cpp:792:5: note: in instantiation of function template specialization 'seqan::loadContigs, seqan::StringSet >, seqan::Owner > > >' requested here loadContigs(fragmentStore1, genomeFileNameList); ^ /<>/apps/bs_tools/casbar.cpp:1265:18: note: in instantiation of function template specialization 'detectSNPs' requested here int result = detectSNPs(options, methOptions); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/casbar.cpp:43: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 15 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/store/store_io.h:1014:17: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(meta, contig.seq, seqFile); ^ /<>/include/seqan/store/store_io.h:1043:12: note: in instantiation of function template specialization 'seqan::loadContigs >' requested here return loadContigs(store, fileNames, true); ^ /<>/apps/bs_tools/casbar.cpp:792:5: note: in instantiation of function template specialization 'seqan::loadContigs, seqan::StringSet >, seqan::Owner > > >' requested here loadContigs(fragmentStore1, genomeFileNameList); ^ /<>/apps/bs_tools/casbar.cpp:1265:18: note: in instantiation of function template specialization 'detectSNPs' requested here int result = detectSNPs(options, methOptions); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/bs_tools/casbar.cpp:41: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/sequence/segment_utils.h:125:12: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here return prefix(lhs, rhsLen) == rhs; ^ /<>/include/seqan/vcf_io/read_vcf.h:141:18: note: in instantiation of function template specialization 'seqan::startsWith >, char [6]>' requested here if (!startsWith(buffer, "CHROM")) ^ /<>/include/seqan/vcf_io/vcf_file.h:198:5: note: in instantiation of function template specialization 'seqan::readHeader, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >' requested here readHeader(header, context(file), file.iter, file.format); ^ /<>/apps/bs_tools/casbar.cpp:953:9: note: in instantiation of function template specialization 'seqan::readHeader' requested here readHeader(vcfHeader, vcfFileIn); ^ /<>/apps/bs_tools/casbar.cpp:1265:18: note: in instantiation of function template specialization 'detectSNPs' requested here int result = detectSNPs(options, methOptions); ^ In file included from /<>/apps/bs_tools/casbar.cpp:43: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bed_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/bs_tools/casbar.cpp:968:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bedFileIn, toCString(contigTempFileNamesBed[i]))) ^ /<>/apps/bs_tools/casbar.cpp:1265:18: note: in instantiation of function template specialization 'detectSNPs' requested here int result = detectSNPs(options, methOptions); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 7 warnings generated. [ 96%] Linking CXX executable ../../bin/bisar cd /<>/obj-x86_64-linux-gnu/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ffp-contract=off -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../bin/bisar -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target bisar make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/dfi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/dfi /<>/obj-x86_64-linux-gnu/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= Scanning dependencies of target dfi make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/dfi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/dfi.dir/dfi.cpp.o -c /<>/apps/dfi/dfi.cpp In file included from /<>/apps/dfi/dfi.cpp:26: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/dfi/dfi.cpp:26: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/dfi/dfi.cpp:26: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/dfi/dfi.cpp:26: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/dfi/dfi.cpp:26: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/dfi/dfi.cpp:248:8: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileNames[s]))) ^ /<>/apps/dfi/dfi.cpp:498:7: note: in instantiation of function template specialization 'loadDatasets >, seqan::Owner > >, std::vector, std::allocator > >, seqan::String > >' requested here if (!loadDatasets(mySet, fileNames, ds)) { ^ /<>/apps/dfi/dfi.cpp:835:20: note: in instantiation of function template specialization 'runDFI >, seqan::String >, std::vector, std::allocator > > >' requested here case 0: return runDFI (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/dfi/dfi.cpp:26: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 16 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/apps/dfi/dfi.cpp:250:9: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, void>' requested here readRecords(ids, seqs, seqFile); ^ /<>/apps/dfi/dfi.cpp:498:7: note: in instantiation of function template specialization 'loadDatasets >, seqan::Owner > >, std::vector, std::allocator > >, seqan::String > >' requested here if (!loadDatasets(mySet, fileNames, ds)) { ^ /<>/apps/dfi/dfi.cpp:835:20: note: in instantiation of function template specialization 'runDFI >, seqan::String >, std::vector, std::allocator > > >' requested here case 0: return runDFI (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 8 warnings generated. [ 96%] Linking CXX executable ../../bin/casbar cd /<>/obj-x86_64-linux-gnu/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -ffp-contract=off -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../bin/casbar -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target casbar make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fiona /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fiona /<>/obj-x86_64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= Scanning dependencies of target fiona_illumina make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/fiona && /usr/bin/c++ -DFIONA_ILLUMINA -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /<>/apps/fiona/fiona.cpp /<>/apps/fiona/fiona.cpp:4671:2: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] String superPackages; ^ /<>/apps/fiona/fiona.cpp:4667:5: note: previous statement is here for (int i = 0; i < (int)dirLen; ++i) ^ In file included from /<>/apps/fiona/fiona.cpp:115: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/fiona.cpp:115: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/fiona/fiona.cpp:578:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileName))) ^ /<>/apps/fiona/fiona.cpp:5438:10: note: in instantiation of function template specialization 'seqan::loadReadsNoNames > >' requested here if (!loadReadsNoNames(store, options.inputFilename, options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/fiona/fiona.cpp:591:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(_id, seq, seqFile); ^ /<>/apps/fiona/fiona.cpp:5438:10: note: in instantiation of function template specialization 'seqan::loadReadsNoNames > >' requested here if (!loadReadsNoNames(store, options.inputFilename, options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc >, seqan::Owner > >, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_sa_stree.h:112:8: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here struct VertexSA : public VertexEsa ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc >, seqan::Owner > >, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ 6 warnings generated. [ 96%] Linking CXX executable ../../bin/dfi cd /<>/obj-x86_64-linux-gnu/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../bin/dfi -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target dfi make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fiona /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fiona /<>/obj-x86_64-linux-gnu/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= Scanning dependencies of target fiona make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/fiona && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fiona.dir/fiona.cpp.o -c /<>/apps/fiona/fiona.cpp /<>/apps/fiona/fiona.cpp:4671:2: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] String superPackages; ^ /<>/apps/fiona/fiona.cpp:4667:5: note: previous statement is here for (int i = 0; i < (int)dirLen; ++i) ^ In file included from /<>/apps/fiona/fiona.cpp:115: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/fiona.cpp:115: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/fiona/fiona.cpp:578:14: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(fileName))) ^ /<>/apps/fiona/fiona.cpp:5438:10: note: in instantiation of function template specialization 'seqan::loadReadsNoNames > >' requested here if (!loadReadsNoNames(store, options.inputFilename, options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/fiona/fiona.cpp:591:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(_id, seq, seqFile); ^ /<>/apps/fiona/fiona.cpp:5438:10: note: in instantiation of function template specialization 'seqan::loadReadsNoNames > >' requested here if (!loadReadsNoNames(store, options.inputFilename, options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<16, 16> >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<16, 16> >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, long, seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<16, 16> >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 18 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple >, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple >, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple >, seqan::Tag > *, long, seqan::Triple, seqan::Tuple >, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple >, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 20 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:114: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:58: /<>/include/seqan/basic/triple_packed.h:82:12: warning: definition of implicit copy assignment operator for 'Triple, seqan::Tuple, seqan::Tag >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const &_p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:225:29: note: in implicit copy assignment operator for 'seqan::Triple, seqan::Tuple, seqan::Tag >' first required here *(__first + __holeIndex) = _GLIBCXX_MOVE(*(__first + __secondChild)); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_heap.h:342:9: note: in instantiation of function template specialization 'std::__adjust_heap, seqan::Tuple, seqan::Tag > *, long, seqan::Triple, seqan::Tuple, seqan::Tag >, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__adjust_heap(__first, __parent, __len, _GLIBCXX_MOVE(__value), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1671:12: note: in instantiation of function template specialization 'std::__make_heap, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__make_heap(__first, __middle, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1932:12: note: in instantiation of function template specialization 'std::__heap_select, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__heap_select(__first, __middle, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1947:13: note: in instantiation of function template specialization 'std::__partial_sort, seqan::Tuple, seqan::Tag > *, __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple, seqan::Tag >, int> > > >' requested here std::__partial_sort(__first, __last, __last, __comp); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: (skipping 22 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) std::__introsort_loop(__first, __last, ^ /<>/include/seqan/index/index_sa_stree.h:195:5: note: in instantiation of function template specialization 'seqan::indexRequire, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa, seqan::FibreSA_>' requested here indexRequire(index, FibreSA()); ^ /<>/include/seqan/index/index_esa_stree.h:211:13: note: in instantiation of function template specialization 'seqan::_indexRequireTopDownIteration, seqan::Alloc >, seqan::Owner > >, void>' requested here _indexRequireTopDownIteration(_index); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:142: /<>/include/seqan/index/index_sa_stree.h:134:5: warning: definition of implicit copy assignment operator for 'VertexSA >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexSA(VertexSA const & other) : ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc >, seqan::Owner > >, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ In file included from /<>/apps/fiona/fiona.cpp:117: In file included from /<>/include/seqan/index.h:137: /<>/include/seqan/index/index_esa_base.h:222:9: warning: definition of implicit copy assignment operator for 'VertexEsa' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] VertexEsa(VertexEsa const &other): ^ /<>/include/seqan/index/index_sa_stree.h:112:8: note: in implicit copy assignment operator for 'seqan::VertexEsa' first required here struct VertexSA : public VertexEsa ^ /<>/include/seqan/index/index_esa_stree.h:1731:24: note: in implicit copy assignment operator for 'seqan::VertexSA >' first required here it._parentDesc = value(it); ^ /<>/include/seqan/index/index_sa_stree.h:311:5: note: in instantiation of function template specialization 'seqan::_historyClear, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::Preorder>' requested here _historyClear(it); ^ /<>/include/seqan/index/index_esa_stree.h:212:13: note: in instantiation of function template specialization 'seqan::goRoot, seqan::Alloc >, seqan::Owner > >, void, seqan::TopDown >' requested here goRoot(*this); ^ /<>/include/seqan/index/index_esa_stree.h:349:13: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > >::Iter' requested here TBase(_index) {} ^ /<>/apps/fiona/fiona.cpp:4874:24: note: in instantiation of member function 'seqan::Iter, seqan::Alloc >, seqan::Owner > >, seqan::IndexSa >, seqan::VSTree > > >::Iter' requested here TConstrainedIterator myConstrainedIterator(myIndex); ^ /<>/apps/fiona/fiona.cpp:5533:32: note: in instantiation of function template specialization 'correctReads, FionaPoisson_>' requested here numCorrected = correctReads(store, options, FionaPoisson()); ^ 16 warnings generated. [ 96%] Linking CXX executable ../../bin/fiona_illumina cd /<>/obj-x86_64-linux-gnu/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../bin/fiona_illumina -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target fiona_illumina make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fiona /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fiona /<>/obj-x86_64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= Scanning dependencies of target compute_gain make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/fiona && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /<>/apps/fiona/compute_gain.cpp In file included from /<>/apps/fiona/compute_gain.cpp:7: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fiona/compute_gain.cpp:7: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/fiona/compute_gain.cpp:7: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/compute_gain.cpp:7: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fiona/compute_gain.cpp:7: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/fiona/compute_gain.cpp:907:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here success = open(inPostFastq, toCString(options.pathFastaFastqPostCorrection)); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/compute_gain.cpp:7: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/include/seqan/seq_io/sequence_file.h:342:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(context(file).buffer[0], seqBuffer, file); ^ /<>/include/seqan/seq_io/sequence_file.h:362:5: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void, unsigned long>' requested here readRecords(meta, seq, file, std::numeric_limits::max()); ^ /<>/apps/fiona/compute_gain.cpp:950:9: note: in instantiation of function template specialization 'seqan::readRecords >, seqan::Owner > >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, void>' requested here readRecords(ids, seqs, inGenome); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fiona/compute_gain.cpp:7: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/fiona/compute_gain.cpp:98:8: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::Tag >' first required here struct Stats ^ /<>/include/seqan/basic/array_construct_destruct.h:254:36: note: in implicit move constructor for 'Stats' first required here new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:305:19: note: in instantiation of function template specialization 'seqan::ValueConstructor_::construct' requested here TConstructor::construct(it, std::forward(param_)); ^ /<>/include/seqan/basic/array_construct_destruct.h:511:9: note: in instantiation of function template specialization 'seqan::valueConstruct' requested here valueConstruct(target_begin, std::move(*source_begin)); ^ /<>/include/seqan/basic/array_construct_destruct.h:1055:5: note: in instantiation of function template specialization 'seqan::_arrayConstructMoveDefault' requested here _arrayConstructMoveDefault(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1064:5: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple::Type() ); ^ /<>/include/seqan/sequence/string_base.h:1697:5: note: in instantiation of function template specialization 'seqan::_reserveStorage, unsigned long, seqan::TagGenerous_>' requested here _reserveStorage(seq, new_capacity, tag); ^ /<>/include/seqan/sequence/string_base.h:1725:38: note: in instantiation of function template specialization 'seqan::reserve, unsigned long, seqan::TagGenerous_>' requested here TSize new_capacity = reserve(me, new_length, TExpand()); ^ /<>/include/seqan/sequence/string_base.h:1785:43: note: in instantiation of function template specialization 'seqan::_Resize_String >::resize_ > >' requested here return _Resize_String >::resize_(me, new_length); ^ /<>/include/seqan/sequence/sequence_interface.h:1149:12: note: in instantiation of function template specialization 'seqan::resize, int, seqan::TagGenerous_>' requested here return resize(std::forward(me), new_length, typename DefaultOverflowExplicit::Type()); ^ /<>/apps/fiona/compute_gain.cpp:986:5: note: in instantiation of function template specialization 'seqan::resize > &, int>' requested here resize(stats, options.numThreads); ^ 16 warnings generated. [ 96%] Linking CXX executable ../../bin/fiona cd /<>/obj-x86_64-linux-gnu/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../bin/fiona -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target fiona make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fx_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fx_tools /<>/obj-x86_64-linux-gnu/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= Scanning dependencies of target fx_fastq_stats make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/fx_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /<>/apps/fx_tools/fx_fastq_stats.cpp In file included from /<>/apps/fx_tools/fx_fastq_stats.cpp:37: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fx_tools/fx_fastq_stats.cpp:37: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/fx_tools/fx_fastq_stats.cpp:37: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 7 warnings generated. [ 96%] Linking CXX executable ../../bin/compute_gain cd /<>/obj-x86_64-linux-gnu/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../bin/compute_gain -lrt -lz -lbz2 In file included from /<>/apps/fx_tools/fx_fastq_stats.cpp:37: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target compute_gain make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fx_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fx_tools /<>/obj-x86_64-linux-gnu/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= Scanning dependencies of target fx_bam_coverage make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/fx_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /<>/apps/fx_tools/fx_bam_coverage.cpp In file included from /<>/apps/fx_tools/fx_fastq_stats.cpp:37: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/fx_tools/fx_fastq_stats.cpp:290:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(seqFile, toCString(options.inFilename))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fx_tools/fx_fastq_stats.cpp:37: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 11 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, qual, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/apps/fx_tools/fx_fastq_stats.cpp:303:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String > >' requested here readRecord(id, seq, quals, seqFile); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fx_tools/fx_bam_coverage.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/fx_tools/fx_bam_coverage.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/fx_tools/fx_bam_coverage.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/fx_tools/fx_bam_coverage.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 6 warnings generated. [ 97%] Linking CXX executable ../../bin/fx_fastq_stats cd /<>/obj-x86_64-linux-gnu/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../bin/fx_fastq_stats -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target fx_fastq_stats make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/gustaf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/gustaf /<>/obj-x86_64-linux-gnu/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake --color= Scanning dependencies of target gustaf_mate_joining make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/gustaf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -c /<>/apps/gustaf/join_mates.cpp In file included from /<>/apps/gustaf/join_mates.cpp:40: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/gustaf/join_mates.cpp:41: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/gustaf/join_mates.cpp:41: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/gustaf/join_mates.cpp:40: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/gustaf/join_mates.cpp:41: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/apps/gustaf/join_mates.cpp:196:26: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here seqan::SeqFileIn l(toCString(fileNameL)); ^ /<>/apps/gustaf/join_mates.cpp:437:9: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/gustaf/join_mates.cpp:41: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, qual, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:260:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/apps/gustaf/join_mates.cpp:209:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::String > >' requested here readRecord(id, seqL, qualL, l); ^ /<>/apps/gustaf/join_mates.cpp:437:9: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here _importSequences(options.inPaths[0], options.inPaths[1], options.revCompl, seqs, ids, sIds, quals, joinPos); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/gustaf/join_mates.cpp:40: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment, seqan::Alloc >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment, seqan::Alloc >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/gustaf/join_mates.cpp:289:22: note: in instantiation of function template specialization 'seqan::prefix, seqan::Alloc >, unsigned long>' requested here append(seqL, prefix(seq, splitPos)); ^ /<>/apps/gustaf/join_mates.cpp:443:9: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here _importSequences(options.inPaths[0], seqs, mateSeqs, ids, sIds, quals, mateQuals); ^ 4 warnings generated. In file included from /<>/apps/gustaf/join_mates.cpp:40: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:464:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/apps/gustaf/join_mates.cpp:295:27: note: in instantiation of function template specialization 'seqan::prefix >, unsigned long>' requested here append(qualL, prefix(qual, splitPos)); ^ /<>/apps/gustaf/join_mates.cpp:443:9: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here _importSequences(options.inPaths[0], seqs, mateSeqs, ids, sIds, quals, mateQuals); ^ [ 97%] Linking CXX executable ../../bin/fx_bam_coverage cd /<>/obj-x86_64-linux-gnu/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../bin/fx_bam_coverage -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target fx_bam_coverage make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/gustaf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/gustaf /<>/obj-x86_64-linux-gnu/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= Scanning dependencies of target gustaf make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/gustaf && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /<>/apps/gustaf/gustaf.cpp In file included from /<>/apps/gustaf/gustaf.cpp:25: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/gustaf/gustaf.cpp:27: In file included from /<>/apps/gustaf/../stellar/stellar.h:28: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/gustaf/gustaf.cpp:27: In file included from /<>/apps/gustaf/../stellar/stellar.h:28: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/gustaf/gustaf.cpp:25: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/gustaf/gustaf.cpp:27: In file included from /<>/apps/gustaf/../stellar/stellar.h:28: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/gustaf/gustaf_matepairs.h:143:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(leftMates, toCString(fileNameL))) ^ /<>/apps/gustaf/msplazer_main.h:71:14: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/gustaf/gustaf.cpp:27: In file included from /<>/apps/gustaf/../stellar/stellar.h:28: In file included from /<>/include/seqan/index.h:46: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/gustaf/gustaf_matepairs.h:165:13: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(idL, seqL, leftMates); ^ /<>/apps/gustaf/msplazer_main.h:71:14: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/gustaf/gustaf.cpp:24: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter > > > >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter > > > >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/apps/gustaf/gustaf_matepairs.h:196:10: note: in instantiation of function template specialization 'std::sort >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, IdComparator > > >' requested here std::sort(begin(uniqueIds, Standard()), end(uniqueIds, Standard()), IdComparator()); // O(n*log(n)) ^ /<>/apps/gustaf/msplazer_main.h:71:14: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) ^ In file included from /<>/apps/gustaf/gustaf.cpp:24: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1954:11: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here __last = __cut; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:1967:9: note: in instantiation of function template specialization 'std::__introsort_loop >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, long, __gnu_cxx::__ops::_Iter_comp_iter > > > >' requested here std::__introsort_loop(__first, __last, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algo.h:4899:12: note: in instantiation of function template specialization 'std::__sort >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, __gnu_cxx::__ops::_Iter_comp_iter > > > >' requested here std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); ^ /<>/apps/gustaf/gustaf_matepairs.h:196:10: note: in instantiation of function template specialization 'std::sort >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, IdComparator > > >' requested here std::sort(begin(uniqueIds, Standard()), end(uniqueIds, Standard()), IdComparator()); // O(n*log(n)) ^ /<>/apps/gustaf/msplazer_main.h:71:14: note: in instantiation of function template specialization '_importSequences, seqan::Alloc >, seqan::String > >' requested here if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, readJoinPositions)) ^ In file included from /<>/apps/gustaf/gustaf.cpp:27: In file included from /<>/apps/gustaf/../stellar/stellar.h:28: In file included from /<>/include/seqan/index.h:92: /<>/include/seqan/index/index_qgram_openaddressing.h:131:9: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/include/seqan/index/find_swift.h:740:37: note: in instantiation of function template specialization 'seqan::host, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift >' requested here TSize seqCount = countSequences(host(pattern)); ^ /<>/include/seqan/index/find_swift.h:1929:9: note: in instantiation of function template specialization 'seqan::_patternInit, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, double, int, seqan::Tag >' requested here _patternInit(pattern, errorRate, minLength); ^ /<>/apps/gustaf/../stellar/stellar.h:674:9: note: in instantiation of function template specialization 'seqan::find, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Tag, int>' requested here while (find(finder, pattern, epsilon, minLength)) { ^ /<>/apps/gustaf/stellar_routines.h:197:13: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, ^ /<>/apps/gustaf/msplazer_main.h:146:9: note: in instantiation of function template specialization '_getStellarMatches, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); ^ In file included from /<>/apps/gustaf/gustaf.cpp:24: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: note: in implicit copy assignment operator for 'seqan::Iter > >, seqan::CountingIteratorImpl_ > >' first required here matIt2 = matIt - diagonalWidth; ^ /<>/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:5: note: in instantiation of function template specialization 'seqan::_alignBandedSmithWatermanDeclump, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Score >, int>' requested here _alignBandedSmithWatermanDeclump(finder, source(gapsH), source(gapsV), sc, cutoff, diag1, diag2); ^ /<>/include/seqan/align/local_alignment_enumeration_banded.h:109:16: note: in instantiation of function template specialization 'seqan::_localAlignmentNext, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Score >, int>' requested here return _localAlignmentNext(enumerator._finder, gapsH, gapsV, enumerator._score, ^ /<>/include/seqan/align/local_alignment_enumeration_banded.h:121:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' requested here return nextLocalAlignment(row(align, 0), row(align, 1), enumerator); ^ /<>/apps/gustaf/../stellar/stellar.h:607:12: note: in instantiation of function template specialization 'seqan::nextLocalAlignment, seqan::Segment, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' requested here while (nextLocalAlignment(localAlign, enumerator)) { ^ /<>/apps/gustaf/../stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/gustaf/stellar_routines.h:197:13: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, ^ /<>/apps/gustaf/msplazer_main.h:146:9: note: in instantiation of function template specialization '_getStellarMatches, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); ^ In file included from /<>/apps/gustaf/gustaf.cpp:27: In file included from /<>/apps/gustaf/../stellar/stellar.h:29: In file included from /<>/include/seqan/seeds.h:52: In file included from /<>/include/seqan/align.h:97: /<>/include/seqan/align/align_base.h:104:13: warning: definition of implicit copy constructor for 'Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] Align & operator=(Align const & other) ^ /<>/apps/gustaf/../stellar/stellar.h:194:24: note: in implicit copy constructor for 'seqan::Align, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' first required here TAlign ali(align); ^ /<>/apps/gustaf/../stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/gustaf/../stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/gustaf/stellar_routines.h:197:13: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, ^ /<>/apps/gustaf/msplazer_main.h:146:9: note: in instantiation of function template specialization '_getStellarMatches, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); ^ In file included from /<>/apps/gustaf/gustaf.cpp:24: In file included from /<>/include/seqan/basic.h:98: In file included from /<>/include/seqan/basic/basic_aggregate.h:57: /<>/include/seqan/basic/triple_base.h:123:12: warning: definition of implicit copy assignment operator for 'Triple' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] inline Triple(Triple const & _p) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:361:18: note: in implicit copy assignment operator for 'seqan::Triple' first required here *__result = std::move(*__first); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:404:22: note: in instantiation of function template specialization 'std::__copy_move::__copy_m *, seqan::Triple *>' requested here _Category>::__copy_m(__first, __last, __result); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:441:8: note: in instantiation of function template specialization 'std::__copy_move_a *, seqan::Triple *>' requested here std::__copy_move_a<_IsMove>(std::__niter_base(__first), ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_algobase.h:505:19: note: in instantiation of function template specialization 'std::__copy_move_a2 *, seqan::Triple *>' requested here return std::__copy_move_a2(std::__miter_base(__first), ^ /<>/include/seqan/basic/array_construct_destruct.h:760:10: note: in instantiation of function template specialization 'std::move *, seqan::Triple *>' requested here std::move(source_begin, source_end, target_begin); ^ /<>/include/seqan/basic/array_construct_destruct.h:1188:5: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) _arrayMoveForwardDefault(source_begin, source_end, target_begin); ^ /<>/apps/gustaf/../stellar/stellar.h:182:14: note: in instantiation of function template specialization '_negativeMerge >' requested here if (!_negativeMerge(queue)) { ^ /<>/apps/gustaf/../stellar/stellar.h:614:9: note: in instantiation of function template specialization '_splitAtXDrops, seqan::Alloc >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, int, int, int>' requested here _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments); ^ /<>/apps/gustaf/../stellar/stellar.h:705:3: note: in instantiation of function template specialization 'verifySwiftHit, seqan::Alloc >, seqan::InfixSegment>, double, int, unsigned int, double, unsigned int, seqan::String >, seqan::String, seqan::Alloc >, seqan::Tag >' requested here verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop, ^ /<>/apps/gustaf/stellar_routines.h:197:13: note: in instantiation of function template specialization 'stellar, seqan::Alloc >, seqan::Dependent >, seqan::IndexQGram, seqan::Tag >, int, double, unsigned int, bool, seqan::String, seqan::Alloc >, seqan::String >, seqan::Tag >' requested here stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop, ^ /<>/apps/gustaf/msplazer_main.h:146:9: note: in instantiation of function template specialization '_getStellarMatches, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::String > > >, seqan::Owner > > >' requested here _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches); ^ In file included from /<>/apps/gustaf/gustaf.cpp:27: In file included from /<>/apps/gustaf/../stellar/stellar.h:29: In file included from /<>/include/seqan/seeds.h:52: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1562:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/misc/interval_tree.h:1532:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, unsigned int, unsigned int>' requested here findIntervals(result, g, pm, act_knot, query_begin, query_end); ^ /<>/include/seqan/misc/interval_tree.h:1513:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, unsigned int>' requested here findIntervals(result, tree.g, tree.pm, query_begin, query_end); ^ /<>/apps/gustaf/gustaf_matepairs.h:255:5: note: in instantiation of function template specialization 'seqan::findIntervals' requested here findIntervals(confMateMatches, gustafChain.rightMateTree, mateIntervalBegin, mateIntervalEnd); ^ /<>/apps/gustaf/gustaf_matepairs.h:294:20: note: in instantiation of function template specialization '_checkRightMateMatches, seqan::Alloc >, seqan::String > >, MSplazerChain > >, unsigned int, seqan::String >, SparsePropertyMap, seqan::Alloc >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc >, seqan::String > >, seqan::Alloc > > >' requested here return _checkRightMateMatches(sMatch, queryMatches, gustafChain, options); ^ /<>/apps/gustaf/gustaf_matepairs.h:458:18: note: in instantiation of function template specialization '_checkMateMatches, seqan::Alloc >, seqan::String > >, MSplazerChain > >, unsigned int, seqan::String >, SparsePropertyMap, seqan::Alloc >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc >, seqan::String > >, seqan::Alloc > > >' requested here if (!_checkMateMatches(queryMatches.matches[i], queryMatches.matches, chain, options)) ^ /<>/apps/gustaf/msplazer_algorithms.h:840:17: note: in instantiation of function template specialization '_initialiseGraphMatePairs, seqan::Alloc >, seqan::String >, MSplazerChain > >, unsigned int, seqan::String >, SparsePropertyMap, seqan::Alloc >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc >, seqan::String > >, seqan::Alloc > > >' requested here _initialiseGraphMatePairs(stellarMatches[i], queryIds[i], chain, msplazerOptions); ^ /<>/apps/gustaf/msplazer_main.h:230:5: note: in instantiation of function template specialization '_chainQueryMatches, seqan::Alloc >, seqan::String >, seqan::String >, MSplazerChain > >, unsigned int, seqan::String >, SparsePropertyMap, seqan::Alloc >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc >, seqan::String > >, seqan::Alloc > > >' requested here _chainQueryMatches(stellarMatches, distanceScores, queryChains, queryIDs, queries, readJoinPositions, msplazerOptions); ^ 8 warnings generated. [ 97%] Linking CXX executable ../../bin/gustaf_mate_joining cd /<>/obj-x86_64-linux-gnu/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf_mate_joining.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -o ../../bin/gustaf_mate_joining -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target gustaf_mate_joining make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/insegt /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/insegt /<>/obj-x86_64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= Scanning dependencies of target insegt make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/insegt && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/insegt.dir/insegt.cpp.o -c /<>/apps/insegt/insegt.cpp In file included from /<>/apps/insegt/insegt.cpp:13: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/insegt/insegt.cpp:16: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/insegt/insegt.cpp:16: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/insegt/insegt.cpp:13: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/insegt/insegt.cpp:16: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/apps/insegt/overlap_module.h:848:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn inGff(toCString(options.nameGFF)); ^ /<>/apps/insegt/insegt.cpp:199:5: note: in instantiation of function template specialization 'seqan::ngsOverlapper' requested here ngsOverlapper(options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/insegt/insegt.cpp:16: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:257:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::True>' requested here _open(*this, fileName, openMode, True()); ^ /<>/apps/insegt/overlap_module.h:848:15: note: in instantiation of member function 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here GffFileIn inGff(toCString(options.nameGFF)); ^ /<>/apps/insegt/insegt.cpp:199:5: note: in instantiation of function template specialization 'seqan::ngsOverlapper' requested here ngsOverlapper(options); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/insegt/insegt.cpp:13: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment >, seqan::PrefixSegment>' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/sequence/segment_prefix.h:471:12: note: in implicit copy constructor for 'seqan::Segment >, seqan::PrefixSegment>' first required here return typename Prefix::Type(t, pos_end); ^ /<>/include/seqan/store/store_all.h:660:17: note: in instantiation of function template specialization 'seqan::prefix >, int>' requested here if (prefix(name, 2) == "__" && infix(name, 2, 2 + length(type)) == type && name[2 + length(type)] == '_') ^ /<>/include/seqan/store/store_io_gff.h:351:5: note: in instantiation of function template specialization 'seqan::_storeRemoveTempAnnoNames, void>' requested here _storeRemoveTempAnnoNames(fragStore); ^ /<>/apps/insegt/overlap_module.h:849:5: note: in instantiation of function template specialization 'seqan::readRecords >' requested here readRecords(fragStore, inGff); ^ /<>/apps/insegt/insegt.cpp:199:5: note: in instantiation of function template specialization 'seqan::ngsOverlapper' requested here ngsOverlapper(options); ^ In file included from /<>/apps/insegt/insegt.cpp:17: In file included from /<>/include/seqan/store.h:61: /<>/include/seqan/store/store_annotation.h:272:5: warning: definition of implicit copy constructor for 'Iter >, seqan::AnnotationTree >' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Iter const &_origin) ^ /<>/apps/insegt/overlap_module.h:41:16: note: in implicit copy constructor for 'seqan::Iter >, seqan::AnnotationTree >' first required here TIter it = begin(fragStore, AnnotationTree<>()); ^ /<>/apps/insegt/overlap_module.h:851:2: note: in instantiation of function template specialization 'seqan::adjustParentEntries >' requested here adjustParentEntries(fragStore); ^ /<>/apps/insegt/insegt.cpp:199:5: note: in instantiation of function template specialization 'seqan::ngsOverlapper' requested here ngsOverlapper(options); ^ In file included from /<>/apps/insegt/insegt.cpp:12: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:74: /<>/include/seqan/basic/iterator_position.h:105:5: warning: definition of implicit copy assignment operator for 'Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other_) : ^ /<>/apps/insegt/overlap_module.h:90:6: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here itR = begin(ids); ^ /<>/apps/insegt/fusion.h:754:5: note: in instantiation of function template specialization 'seqan::getIdsForRead >, seqan::Owner > >, void, seqan::FragmentStoreConfig, seqan::IntervalTree, seqan::String, seqan::Alloc > >' requested here getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval); ^ /<>/apps/insegt/overlap_module.h:870:3: note: in instantiation of function template specialization 'seqan::getResults_Fusion, seqan::Alloc >, seqan::String >, seqan::String, seqan::Alloc >, seqan::String, seqan::Alloc >, void, seqan::FragmentStoreConfig >' requested here getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); ^ /<>/apps/insegt/insegt.cpp:199:5: note: in instantiation of function template specialization 'seqan::ngsOverlapper' requested here ngsOverlapper(options); ^ In file included from /<>/apps/insegt/insegt.cpp:12: In file included from /<>/include/seqan/basic.h:86: In file included from /<>/include/seqan/basic/basic_iterator.h:71: /<>/include/seqan/basic/iterator_counting.h:74:5: warning: definition of implicit copy assignment operator for 'Iter >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Iter(Iter const & other) : ^ /<>/include/seqan/basic/iterator_position.h:81:7: note: in implicit copy assignment operator for 'seqan::Iter >' first required here class Iter : ^ /<>/apps/insegt/overlap_module.h:90:6: note: in implicit copy assignment operator for 'seqan::Iter >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' first required here itR = begin(ids); ^ /<>/apps/insegt/fusion.h:754:5: note: in instantiation of function template specialization 'seqan::getIdsForRead >, seqan::Owner > >, void, seqan::FragmentStoreConfig, seqan::IntervalTree, seqan::String, seqan::Alloc > >' requested here getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval); ^ /<>/apps/insegt/overlap_module.h:870:3: note: in instantiation of function template specialization 'seqan::getResults_Fusion, seqan::Alloc >, seqan::String >, seqan::String, seqan::Alloc >, seqan::String, seqan::Alloc >, void, seqan::FragmentStoreConfig >' requested here getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); ^ /<>/apps/insegt/insegt.cpp:199:5: note: in instantiation of function template specialization 'seqan::ngsOverlapper' requested here ngsOverlapper(options); ^ In file included from /<>/apps/insegt/insegt.cpp:16: In file included from /<>/include/seqan/graph_align.h:56: /<>/include/seqan/misc/interval_tree.h:288:5: warning: definition of implicit copy assignment operator for 'IntervalTreeNode, seqan::StorePointsOnly>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] IntervalTreeNode(IntervalTreeNode const & other) : ^ /<>/include/seqan/misc/interval_tree.h:1441:18: note: in implicit copy assignment operator for 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' first required here act_prop = property(pm, act_knot); ^ /<>/include/seqan/store/store_intervaltree.h:182:5: note: in instantiation of function template specialization 'seqan::findIntervals >, seqan::String, seqan::StorePointsOnly>, seqan::Alloc >, unsigned int, unsigned int>' requested here findIntervals(result1, intervalTree.g, intervalTree.pm, interval.i1 + offsetInterval); ^ /<>/apps/insegt/overlap_module.h:85:3: note: in instantiation of function template specialization 'seqan::findIntervalsForInterval, seqan::Interval, unsigned int>' requested here findIntervalsForInterval(value(itR), intervalTree, getValue(itI), offsetInterval); ^ /<>/apps/insegt/fusion.h:754:5: note: in instantiation of function template specialization 'seqan::getIdsForRead >, seqan::Owner > >, void, seqan::FragmentStoreConfig, seqan::IntervalTree, seqan::String, seqan::Alloc > >' requested here getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval); ^ /<>/apps/insegt/overlap_module.h:870:3: note: in instantiation of function template specialization 'seqan::getResults_Fusion, seqan::Alloc >, seqan::String >, seqan::String, seqan::Alloc >, seqan::String, seqan::Alloc >, void, seqan::FragmentStoreConfig >' requested here getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO); ^ /<>/apps/insegt/insegt.cpp:199:5: note: in instantiation of function template specialization 'seqan::ngsOverlapper' requested here ngsOverlapper(options); ^ 11 warnings generated. [ 97%] Linking CXX executable ../../bin/insegt cd /<>/obj-x86_64-linux-gnu/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../bin/insegt -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target insegt make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= Scanning dependencies of target mason_genome make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /<>/apps/mason2/mason_genome.cpp 13 warnings generated. [ 98%] Linking CXX executable ../../bin/gustaf cd /<>/obj-x86_64-linux-gnu/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../bin/gustaf -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target gustaf make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= Scanning dependencies of target mason_methylation make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /<>/apps/mason2/mason_methylation.cpp In file included from /<>/apps/mason2/mason_genome.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_genome.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_genome.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_genome.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_methylation.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_methylation.cpp:39: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_methylation.cpp:39: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_methylation.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_genome cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../bin/mason_genome -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_genome make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= Scanning dependencies of target mason_frag_sequencing make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /<>/apps/mason2/mason_frag_sequencing.cpp In file included from /<>/apps/mason2/mason_frag_sequencing.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_frag_sequencing.cpp:39: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_frag_sequencing.cpp:39: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_frag_sequencing.cpp:38: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_frag_sequencing.cpp:39: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/mason2/mason_frag_sequencing.cpp:142:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(inFragments, toCString(options.inputFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_frag_sequencing.cpp:39: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 12 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here readRecord(meta, seq, file, static_cast::Base const & >(format)); ^ /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:231:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/seq_io/sequence_file.h:296:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, file, file.format); ^ /<>/apps/mason2/mason_frag_sequencing.cpp:213:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String, seqan::Alloc > >' requested here readRecord(fragId, fragSeq, inFragments); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 4 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_methylation cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../bin/mason_methylation -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_methylation make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_variator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /<>/apps/mason2/mason_variator.cpp In file included from /<>/apps/mason2/mason_variator.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_variator.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_variator.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_variator.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 6 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_frag_sequencing cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../bin/mason_frag_sequencing -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_frag_sequencing make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= Scanning dependencies of target mason_materializer make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /<>/apps/mason2/mason_materializer.cpp In file included from /<>/apps/mason2/mason_materializer.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_materializer.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_materializer.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_materializer.cpp:45: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_variator cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../bin/mason_variator -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_variator make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= Scanning dependencies of target mason_splicing make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /<>/apps/mason2/mason_splicing.cpp In file included from /<>/apps/mason2/mason_splicing.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_splicing.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_splicing.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_splicing.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_splicing.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/mason2/mason_splicing.cpp:152:18: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffFileIn, toCString(options.inputGffFile))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_splicing.cpp:42: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/mason2/mason_splicing.cpp:152:18: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(gffFileIn, toCString(options.inputGffFile))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 4 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_materializer cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../bin/mason_materializer -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_materializer make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_simulator make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /<>/apps/mason2/mason_simulator.cpp In file included from /<>/apps/mason2/mason_simulator.cpp:43: In file included from /<>/apps/mason2/fragment_generation.h:51: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_simulator.cpp:43: In file included from /<>/apps/mason2/fragment_generation.h:52: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_simulator.cpp:43: In file included from /<>/apps/mason2/fragment_generation.h:52: In file included from /<>/include/seqan/seq_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_simulator.cpp:43: In file included from /<>/apps/mason2/fragment_generation.h:51: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 6 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_splicing cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../bin/mason_splicing -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_splicing make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= Scanning dependencies of target mason_tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /<>/apps/mason2/mason_tests.cpp In file included from /<>/apps/mason2/mason_tests.cpp:40: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/mason2/mason_tests.cpp:40: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/mason2/mason_tests.cpp:40: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:49: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/mason2/mason_tests.cpp:40: In file included from /<>/apps/mason2/sequencing.h:43: In file included from /<>/include/seqan/bam_io.h:47: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_tests cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../bin/mason_tests -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_tests make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/micro_razers /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/micro_razers /<>/obj-x86_64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= Scanning dependencies of target micro_razers make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /<>/apps/micro_razers/micro_razers.cpp In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:43: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Raw_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > >' requested here /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/micro_razers/micro_razers.cpp:414:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here success = open(options.readFile, toCString(readFileNames[0])); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:673:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::False>' requested here return _open(file, stream, _mapFileFormatToCompressionFormat(file.format), False()); ^ /<>/apps/micro_razers/micro_razers.cpp:416:19: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void, std::basic_istream >' requested here success = open(options.readFile, std::cin); ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 14 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/seq_io/sequence_file.h:285:5: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String >, seqan::FormattedFile, seqan::Tag, void>, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > > > >' requested here readRecord(meta, seq, qual, file, file.format); ^ /<>/apps/micro_razers/../razers/paramChooser.h:270:9: note: in instantiation of function template specialization 'seqan::readRecord >, seqan::String >, seqan::String > >' requested here readRecord(fastaId, seq, qual, reader); ^ /<>/apps/micro_razers/../razers/paramChooser.h:316:13: note: in instantiation of function template specialization 'seqan::qualityDistributionFromFastQFile, seqan::String > >' requested here qualityDistributionFromFastQFile(filestrm, avg_act, pm_options); ^ /<>/apps/micro_razers/../razers/paramChooser.h:1248:13: note: in instantiation of function template specialization 'seqan::getAvgFromPrbDirectory > >' requested here getAvgFromPrbDirectory(pm_options.fname[0], errorDistribution, pm_options); ^ /<>/apps/micro_razers/micro_razers.cpp:469:18: note: in instantiation of function template specialization 'seqan::chooseParams >' requested here if (!chooseParams(options,pm_options)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/micro_razers/../razers/razers.h:1666:27: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/micro_razers/../razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/micro_razers/../razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/micro_razers/../razers/razers.h:2265:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::UngappedShape<0> >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift()); ^ /<>/apps/micro_razers/micro_razers.cpp:165:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/micro_razers/micro_razers.cpp:551:18: note: in instantiation of function template specialization 'mapMicroRNAReads >' requested here int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/micro_razers/../razers/razers.h:1666:27: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/micro_razers/../razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/micro_razers/../razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/micro_razers/../razers/razers.h:2268:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/micro_razers/micro_razers.cpp:165:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/micro_razers/micro_razers.cpp:551:18: note: in instantiation of function template specialization 'mapMicroRNAReads >' requested here int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:30: In file included from /<>/include/seqan/index.h:87: /<>/include/seqan/index/shape_onegapped.h:107:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::OneGappedShape>' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::OneGappedShape>' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/micro_razers/../razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/micro_razers/../razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/micro_razers/../razers/razers.h:2268:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::OneGappedShape>, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift()); ^ /<>/apps/micro_razers/micro_razers.cpp:165:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/micro_razers/micro_razers.cpp:551:18: note: in instantiation of function template specialization 'mapMicroRNAReads >' requested here int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:30: In file included from /<>/include/seqan/index.h:91: /<>/include/seqan/index/index_qgram.h:268:5: warning: definition of implicit copy assignment operator for 'Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Index(Index &other): ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: in instantiation of function template specialization 'seqan::value, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here return value(me.data_host); ^ /<>/apps/micro_razers/../razers/razers.h:1666:27: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) TReadSet &readSet = host(host(swiftPattern)); ^ /<>/apps/micro_razers/../razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/micro_razers/../razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/micro_razers/../razers/razers.h:2271:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/micro_razers/micro_razers.cpp:165:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/micro_razers/micro_razers.cpp:551:18: note: in instantiation of function template specialization 'mapMicroRNAReads >' requested here int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ In file included from /<>/apps/micro_razers/micro_razers.cpp:37: In file included from /<>/apps/micro_razers/../razers/razers.h:28: In file included from /<>/include/seqan/find.h:44: In file included from /<>/include/seqan/modifier.h:68: In file included from /<>/include/seqan/modifier/cyclic_shape.h:41: /<>/include/seqan/index/shape_gapped.h:281:9: warning: definition of implicit copy assignment operator for 'Shape, seqan::GappedShape > >' is deprecated because it has a user-declared copy constructor [-Wdeprecated-copy] Shape(Shape const &other): ^ /<>/include/seqan/index/index_qgram.h:229:7: note: in implicit copy assignment operator for 'seqan::Shape, seqan::GappedShape > >' first required here class Index > { ^ /<>/include/seqan/basic/fundamental_transport.h:110:12: note: in implicit copy assignment operator for 'seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' first required here target = source; ^ /<>/include/seqan/basic/holder_tristate.h:645:9: note: in instantiation of function template specialization 'seqan::assign, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here assign(_dataValue(me), value_); ^ /<>/include/seqan/basic/holder_tristate.h:594:13: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me, _dataValue(me)); ^ /<>/include/seqan/basic/holder_tristate.h:863:9: note: in instantiation of function template specialization 'seqan::create, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > > >' requested here create(me); ^ /<>/include/seqan/find/find_pattern_base.h:339:12: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) return value(me.data_host); ^ /<>/apps/micro_razers/../razers/razers.h:2043:5: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::String, seqan::Alloc >, seqan::Index, seqan::Alloc >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Tag >, seqan::String, seqan::Alloc >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options); ^ /<>/apps/micro_razers/../razers/razers.h:2206:10: note: in instantiation of function template specialization 'seqan::mapSingleReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift()); ^ /<>/apps/micro_razers/../razers/razers.h:2271:11: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec, seqan::Shape, seqan::GappedShape > >, seqan::Tag > >' requested here return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift()); ^ /<>/apps/micro_razers/micro_razers.cpp:165:17: note: in instantiation of function template specialization 'seqan::mapReads, seqan::Alloc >, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String >, seqan::Alloc >, seqan::RazerSSpec >' requested here int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options); ^ /<>/apps/micro_razers/micro_razers.cpp:551:18: note: in instantiation of function template specialization 'mapMicroRNAReads >' requested here int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options); ^ 4 warnings generated. [ 98%] Linking CXX executable ../../bin/mason_simulator cd /<>/obj-x86_64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../bin/mason_simulator -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_simulator make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/ngs_roi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/ngs_roi /<>/obj-x86_64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= Scanning dependencies of target roi_feature_projection make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /<>/apps/ngs_roi/roi_feature_projection.cpp In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:44: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:46: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:46: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:44: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:46: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:596:12: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, fileStream, stream.format); ^ /<>/include/seqan/stream/formatted_file.h:651:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_istream, seqan::Tag >' requested here if (!open(file.stream, stream, compressionFormat)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::Tag, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/ngs_roi/roi_feature_projection.cpp:151:9: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here bedFileIn(inStream) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:46: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Bed_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:657:10: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::Tag, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/ngs_roi/roi_feature_projection.cpp:151:9: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here bedFileIn(inStream) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:46: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGff_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:657:10: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/ngs_roi/roi_feature_projection.cpp:194:9: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here gffFileIn(inStream), gffID(0), gffType(options.gffType) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:46: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagGtf_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::TagList, seqan::TagList, void> > >' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:657:10: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:267:9: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, std::basic_istream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >, seqan::True>' requested here _open(*this, istream, _mapFileFormatToCompressionFormat(format), True()); ^ /<>/apps/ngs_roi/roi_feature_projection.cpp:194:9: note: in instantiation of function template specialization 'seqan::FormattedFile, seqan::Tag, void>::FormattedFile' requested here gffFileIn(inStream), gffID(0), gffType(options.gffType) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/roi_feature_projection.cpp:46: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Roi_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/ngs_roi/roi_feature_projection.cpp:876:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(roiFileIn, toCString(options.inputRoiFile))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 9 warnings generated. [ 98%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /<>/apps/ngs_roi/project_spliced.cpp In file included from /<>/apps/ngs_roi/project_spliced.cpp:36: In file included from /<>/apps/ngs_roi/project_spliced.h:51: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/project_spliced.cpp:36: In file included from /<>/apps/ngs_roi/project_spliced.h:51: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/ngs_roi/project_spliced.cpp:36: In file included from /<>/apps/ngs_roi/project_spliced.h:51: In file included from /<>/include/seqan/gff_io.h:47: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/project_spliced.cpp:36: In file included from /<>/apps/ngs_roi/project_spliced.h:51: In file included from /<>/include/seqan/gff_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 98%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /<>/apps/ngs_roi/project_interval.cpp In file included from /<>/apps/ngs_roi/project_interval.cpp:36: In file included from /<>/apps/ngs_roi/project_interval.h:42: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/project_interval.cpp:36: In file included from /<>/apps/ngs_roi/project_interval.h:42: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/ngs_roi/project_interval.cpp:36: In file included from /<>/apps/ngs_roi/project_interval.h:42: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/project_interval.cpp:36: In file included from /<>/apps/ngs_roi/project_interval.h:42: In file included from /<>/include/seqan/bed_io.h:45: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [ 98%] Linking CXX executable ../../bin/roi_feature_projection cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../bin/roi_feature_projection -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target roi_feature_projection [100%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /<>/apps/razers/param_tabs.cpp 12 warnings generated. make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/ngs_roi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/ngs_roi /<>/obj-x86_64-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= Scanning dependencies of target bam2roi make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /<>/apps/ngs_roi/bam2roi.cpp [100%] Linking CXX executable ../../bin/micro_razers cd /<>/obj-x86_64-linux-gnu/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../bin/micro_razers -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target micro_razers make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/ngs_roi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/ngs_roi /<>/obj-x86_64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= Scanning dependencies of target roi_plot_thumbnails make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /<>/apps/ngs_roi/roi_plot_thumbnails.cpp In file included from /<>/apps/ngs_roi/roi_plot_thumbnails.cpp:41: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/roi_plot_thumbnails.cpp:41: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/ngs_roi/roi_plot_thumbnails.cpp:41: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/roi_plot_thumbnails.cpp:41: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/bam2roi.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/bam2roi.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/ngs_roi/bam2roi.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/bam2roi.cpp:40: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:62: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/roi_plot_thumbnails.cpp:41: In file included from /<>/include/seqan/arg_parse.h:46: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/formatted_file.h:565:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, std::char_traits >, seqan::Roi_>' requested here return guessFormatFromStream(file.stream, file.format); ^ /<>/include/seqan/stream/formatted_file.h:712:14: note: in instantiation of function template specialization 'seqan::guessFormat, void>' requested here if (!guessFormat(file)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/apps/ngs_roi/roi_plot_thumbnails.cpp:432:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(roiFileIn, toCString(options.inputFileName))) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ 5 warnings generated. [100%] Linking CXX executable ../../bin/roi_plot_thumbnails cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../bin/roi_plot_thumbnails -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target roi_plot_thumbnails [100%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /<>/apps/ngs_roi/roi_builder.cpp 4 warnings generated. make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align_lib make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -c /<>/apps/pair_align/lib/pair_align_lib.cpp In file included from /<>/apps/ngs_roi/roi_builder.cpp:35: In file included from /<>/apps/ngs_roi/roi_builder.h:40: In file included from /<>/include/seqan/roi_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/ngs_roi/roi_builder.cpp:35: In file included from /<>/apps/ngs_roi/roi_builder.h:40: In file included from /<>/include/seqan/roi_io.h:54: In file included from /<>/include/seqan/roi_io/roi_io_context.h:40: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/ngs_roi/roi_builder.cpp:35: In file included from /<>/apps/ngs_roi/roi_builder.h:40: In file included from /<>/include/seqan/roi_io.h:54: In file included from /<>/include/seqan/roi_io/roi_io_context.h:40: In file included from /<>/include/seqan/store.h:38: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/ngs_roi/roi_builder.cpp:35: In file included from /<>/apps/ngs_roi/roi_builder.h:40: In file included from /<>/include/seqan/roi_io.h:45: In file included from /<>/include/seqan/file.h:58: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [100%] Linking CXX executable ../../bin/bam2roi cd /<>/obj-x86_64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../bin/bam2roi -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bam2roi In file included from /<>/apps/pair_align/lib/pair_align_lib.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/lib/pair_align_lib.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/lib/pair_align_lib.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/lib/pair_align_lib.cpp:37: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [100%] Linking CXX static library libpair_align_lib.a cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/cmake -P CMakeFiles/pair_align_lib.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/apps/pair_align/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align_lib.dir/link.txt --verbose=1 /usr/bin/ar qc libpair_align_lib.a CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o /usr/bin/ranlib libpair_align_lib.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target pair_align_lib make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align /<>/obj-x86_64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /<>/obj-x86_64-linux-gnu/apps/pair_align && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /<>/apps/pair_align/pair_align.cpp In file included from /<>/apps/pair_align/pair_align.cpp:16: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/formatted_file.h:721:36: note: in implicit copy constructor for 'seqan::Segment' first required here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ In file included from /<>/apps/pair_align/pair_align.cpp:16: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Tag >, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:568:20: note: in instantiation of function template specialization 'seqan::open, std::char_traits, seqan::BufferedStream, seqan::Tag >, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here return open(stream, stream.bufferedStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:533:25: note: pointer 'VALUE' declared here static char const * VALUE; ^ In file included from /<>/apps/pair_align/pair_align.cpp:16: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:59: In file included from /<>/include/seqan/graph_align.h:45: In file included from /<>/include/seqan/score.h:43: In file included from /<>/include/seqan/stream.h:69: /<>/include/seqan/stream/stream_base.h:209:58: warning: 'sizeof (MagicHeader::VALUE)' will return the size of the pointer, not the array itself [-Wsizeof-pointer-div] for (i = 0; i != sizeof(MagicHeader::VALUE) / sizeof(char); ++i) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /<>/include/seqan/stream/guess_format.h:75:13: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::Nothing_>' requested here if (guessFormatFromStream(seq, TFormat())) ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, void> >' requested here return guessFormatFromStream(seq, static_cast::Base &>(format)); ^ /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, void> > >' requested here /<>/include/seqan/stream/guess_format.h:81:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, void> > > >' requested here /<>/include/seqan/stream/virtual_stream.h:472:12: note: in instantiation of function template specialization 'seqan::guessFormatFromStream, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here return guessFormatFromStream(fileStream, compressionType); ^ /<>/include/seqan/stream/virtual_stream.h:575:10: note: in instantiation of function template specialization 'seqan::_guessFormat, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here if (!_guessFormat(stream, fileStream, compressionType)) ^ /<>/include/seqan/stream/virtual_stream.h:625:9: note: in instantiation of function template specialization 'seqan::open, std::char_traits, std::basic_fstream, seqan::TagSelector, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > > >' requested here open(stream, stream.file, stream.format); // read from a pipe (without file extension) ^ /<>/include/seqan/stream/formatted_file.h:704:10: note: in instantiation of function template specialization 'seqan::open, std::char_traits >' requested here if (!open(file.stream, fileName, openMode)) ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ /<>/include/seqan/basic/basic_stream.h:537:39: note: pointer 'VALUE' declared here char const * MagicHeader::VALUE = NULL; ^ In file included from /<>/apps/pair_align/pair_align.cpp:16: In file included from /<>/apps/pair_align/lib/pair_align_lib.h:41: In file included from /<>/include/seqan/align.h:57: In file included from /<>/include/seqan/modifier.h:47: In file included from /<>/include/seqan/sequence.h:98: /<>/include/seqan/sequence/segment_prefix.h:117:5: warning: definition of implicit copy constructor for 'Segment' is deprecated because it has a user-declared copy assignment operator [-Wdeprecated-copy] operator = (Segment const & source) ^ /<>/include/seqan/stream/virtual_stream.h:527:16: note: in implicit copy constructor for 'seqan::Segment' first required here return _getUncompressedBasename(fname, TFormat()); ^ /<>/include/seqan/stream/formatted_file.h:721:47: note: in instantiation of function template specialization 'seqan::_getUncompressedBasename, seqan::TagList, seqan::TagList, seqan::TagList, void> > > > >' requested here Prefix::Type basename = _getUncompressedBasename(fileName, format(file.stream)); ^ /<>/include/seqan/stream/formatted_file.h:739:12: note: in instantiation of function template specialization 'seqan::_open, seqan::Tag, void, seqan::False>' requested here return _open(file, fileName, openMode, False()); ^ /<>/include/seqan/bam_io/bam_index_bai.h:699:10: note: in instantiation of function template specialization 'seqan::open, seqan::Tag, void>' requested here if (!open(bamFile, bamFilename)) ^ 4 warnings generated. [100%] Linking CXX executable ../../bin/pair_align cd /<>/obj-x86_64-linux-gnu/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp=libomp -Wl,-z,relro -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../bin/pair_align lib/libpair_align_lib.a -lrt -lz -lbz2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target pair_align make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' #cd obj-x86_64-linux-gnu; make dox # This does nothing and no *.html files will be created at all # This ends up in: # Could not import extension sphinxcontrib.bibtex (exception: No module named sphinxcontrib.bibtex) # Seems there is no sphinx module bibtex - thus deactivating creation of html manual # cd manual && make html make[1]: Leaving directory '/<>' dh_auto_build -Nseqan-apps cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build [ 0%] Built target seqan_library make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target pair_align_global_1001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build [ 1%] Built target pair_align_global_1111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build [ 1%] Built target pair_align_global_1101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_sim.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 1%] Built target pair_align_global_1011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build [ 1%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= [ 2%] Built target mason_sim make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build [ 2%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build [ 2%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend [ 2%] Built target pair_align_global_1110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend [ 2%] Built target pair_align_global_0010 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build [ 2%] Built target pair_align_global_0101 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f 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--color= [ 2%] Built target pair_align_global_1100 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build [ 2%] Built target pair_align_global_0111 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target pair_align_global_0110 make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend [ 2%] Built target pair_align_global_1000 make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/param_chooser /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/param_chooser /<>/obj-x86_64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/param_chooser /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/param_chooser /<>/obj-x86_64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= [ 2%] Built target pair_align_lcs make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build [ 2%] Built target pair_align_local make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build [ 2%] Built target test_funcs_param_chooser make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend [ 2%] Built target param_chooser make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rabema /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rabema /<>/obj-x86_64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target rabema_do_search make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers /<>/obj-x86_64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= [ 3%] Built target rabema_evaluate make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers3 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers3 /<>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build [ 3%] Built target rabema_build_gold_standard make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend [ 3%] Built target rabema_prepare_sam make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers3 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers3 /<>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/razers/CMakeFiles/razers.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/razers3 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/razers3 /<>/obj-x86_64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target razers make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/rep_sep /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/rep_sep /<>/obj-x86_64-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= [ 4%] Built target razers3_quality2prob make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/sak /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/sak /<>/obj-x86_64-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= [ 4%] Built target razers3_simulate_reads make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/sam2matrix /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/sam2matrix /<>/obj-x86_64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target razers3 make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/samcat /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/samcat /<>/obj-x86_64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= [ 4%] Built target rep_sep make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend [ 4%] Built target sak make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/searchjoin /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/searchjoin /<>/obj-x86_64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/searchjoin /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/searchjoin /<>/obj-x86_64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build [ 4%] Built target sam2matrix make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/samcat/CMakeFiles/samcat.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/seqan_tcoffee /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/seqan_tcoffee /<>/obj-x86_64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_join.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_search.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target samcat make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend [ 5%] Built target s4_join make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/seqcons2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/seqcons2 /<>/obj-x86_64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= [ 5%] Built target s4_search make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/sgip /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/sgip /<>/obj-x86_64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/snp_store /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/snp_store /<>/obj-x86_64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/sgip/CMakeFiles/sgip.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build [ 5%] Built target seqan_tcoffee make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/seqcons2/CMakeFiles/seqcons2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend [ 5%] Built target sgip make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/splazers /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/splazers /<>/obj-x86_64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/snp_store/CMakeFiles/snp_store.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target seqcons2 make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/stellar /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/stellar /<>/obj-x86_64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/tree_recon /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/tree_recon /<>/obj-x86_64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= [ 6%] Built target snp_store make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/yara /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/yara /<>/obj-x86_64-linux-gnu/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/splazers/CMakeFiles/splazers.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/stellar/CMakeFiles/stellar.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build [ 6%] Built target splazers make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend [ 6%] Built target stellar make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/yara /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/yara /<>/obj-x86_64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/yara/CMakeFiles/yara_mapper.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/DependInfo.cmake --color= [ 6%] Built target tree_recon make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/DependInfo.cmake --color= [ 7%] Built target yara_mapper make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length_avx2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/yara/CMakeFiles/yara_indexer.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length_avx2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target test_align_simd_global_variable_length_avx2 make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/depend [ 7%] Built target yara_indexer make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/DependInfo.cmake --color= [ 7%] Built target test_align_simd_global_equal_length_avx2 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_skx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/build [ 8%] Built target test_align_simd_global_equal_length_avx512_skx make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/DependInfo.cmake --color= make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length_sse4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_knl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length_sse4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target test_align_simd_local_equal_length_sse4 make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/build [ 9%] Built target test_align_simd_global_equal_length_avx512_knl make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/DependInfo.cmake --color= make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length_sse4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target test_align_simd_global_equal_length_sse4 make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/DependInfo.cmake --color= [ 10%] Built target test_align_simd_local_variable_length_sse4 make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_knl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/build [ 10%] Built target test_align_simd_global_variable_length_avx512_knl make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length_sse4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_cnl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target test_align_simd_global_variable_length_sse4 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/DependInfo.cmake --color= [ 10%] Built target test_align_simd_local_equal_length_avx512_cnl make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/DependInfo.cmake --color= [ 10%] Built target test_align_simd_local_equal_length make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/build [ 10%] Built target test_align_simd_global_variable_length make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_skx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length_avx512_cnl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 11%] Built target test_align_simd_global_variable_length_avx512_skx make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake --color= [ 11%] Built target test_align_simd_global_variable_length_avx512_cnl make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/build make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/depend [ 12%] Built target test_align make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/DependInfo.cmake --color= make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length_avx2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/DependInfo.cmake --color= make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_equal_length_avx2 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/build make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/DependInfo.cmake --color= [ 12%] Built target test_align_simd_global_equal_length make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_knl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length_avx512_skx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/build [ 12%] Built target test_align_simd_local_equal_length_avx512_knl make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/depend [ 12%] Built target test_align_simd_local_equal_length_avx512_skx make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length_avx2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/DependInfo.cmake --color= make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_cnl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_variable_length_avx2 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/build make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/DependInfo.cmake --color= [ 12%] Built target test_align_simd_local_variable_length_avx512_cnl make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length_avx512_cnl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_knl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align /<>/obj-x86_64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/build [ 12%] Built target test_align_simd_global_equal_length_avx512_cnl make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/depend [ 12%] Built target test_align_simd_local_variable_length_avx512_knl make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_extend /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_extend /<>/obj-x86_64-linux-gnu/tests/align_extend/CMakeFiles/test_align_extend.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length_avx512_skx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_simd_local_variable_length_avx512_skx make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/build make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/DependInfo.cmake --color= [ 12%] Built target test_align_simd_local_variable_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_extend/CMakeFiles/test_align_extend.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build [ 12%] Built target test_align_extend [ 12%] Built target test_align_parallel_data_structures make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/depend make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/DependInfo.cmake --color= make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/build [ 12%] Built target test_align_parallel_algorithm make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/build make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface_sse4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_interface make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_skx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/DependInfo.cmake --color= [ 12%] Built target test_align_parallel_interface_sse4 make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/depend [ 12%] Built target test_align_parallel_algorithm_avx512_skx make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/build make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_knl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target test_align_parallel_interface_avx2 make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/build make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/DependInfo.cmake --color= [ 12%] Built target test_align_parallel_interface_avx512_knl make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_cnl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_sse4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/build [ 12%] Built target test_align_parallel_interface_avx512_cnl make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/depend [ 13%] Built target test_align_parallel_algorithm_sse4 make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_parallel /<>/obj-x86_64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface_avx512_skx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/build [ 13%] Built target test_align_parallel_algorithm_avx2 make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_profile /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_profile /<>/obj-x86_64-linux-gnu/tests/align_profile/CMakeFiles/test_align_profile.dir/DependInfo.cmake --color= [ 14%] Built target test_align_parallel_interface_avx512_skx make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_cnl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/align_split /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/align_split /<>/obj-x86_64-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm_avx512_knl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_align_parallel_algorithm_avx512_cnl make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/build [ 14%] Built target test_align_parallel_algorithm_avx512_knl make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/alignment_free /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/alignment_free /<>/obj-x86_64-linux-gnu/tests/alignment_free/CMakeFiles/test_alignment_free.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/arg_parse /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/arg_parse /<>/obj-x86_64-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_split/CMakeFiles/test_align_split.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/align_profile/CMakeFiles/test_align_profile.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/build [ 14%] Built target test_align_split make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/depend [ 14%] Built target test_align_profile make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/arg_parse /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/arg_parse /<>/obj-x86_64-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/bam_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/bam_io /<>/obj-x86_64-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/alignment_free/CMakeFiles/test_alignment_free.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_arg_parse_version_check make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/build cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/arg_parse/CMakeFiles/test_arg_parse.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_alignment_free make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/bam_io/CMakeFiles/test_bam_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_exception.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_arg_parse make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build [ 14%] Built target test_bam_io make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake --color= [ 14%] Built target test_basic_exception make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/depend [ 14%] Built target test_basic_metaprogramming make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_concept.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_math.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_fundamental.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_math make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/build make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_container.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_concept.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target test_basic_fundamental make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_alphabet.dir/DependInfo.cmake --color= [ 14%] Built target test_basic_container make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/depend [ 14%] Built target test_basic_concept make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/build make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_parallelism.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_aggregate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_alphabet.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_parallelism.dir/build'. [ 14%] Built target test_basic_aggregate make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_allocator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake --color= [ 14%] Built target test_basic_alphabet make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake --color= [ 15%] Built target test_basic_parallelism [ 15%] Built target test_basic_allocator make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/depend make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/basic /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/basic /<>/obj-x86_64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/bed_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/bed_io /<>/obj-x86_64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_proxy.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_iterator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target test_basic_smart_pointer make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/bed_io/CMakeFiles/test_bed_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target test_basic_proxy make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/blast /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/blast /<>/obj-x86_64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/consensus /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/consensus /<>/obj-x86_64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake --color= [ 17%] Built target test_basic_iterator make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/depend [ 18%] Built target test_bed_io make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/consensus_v2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/consensus_v2 /<>/obj-x86_64-linux-gnu/tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/find /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/find /<>/obj-x86_64-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/blast/CMakeFiles/test_blast.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/consensus/CMakeFiles/test_consensus.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_blast make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/find/CMakeFiles/test_find.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/gff_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/gff_io /<>/obj-x86_64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_consensus make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend [ 18%] Built target test_find make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_algorithms /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_algorithms /<>/obj-x86_64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_align /<>/obj-x86_64-linux-gnu/tests/graph_align/CMakeFiles/test_graph_align.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build [ 18%] Built target test_consensus_v2 make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_msa /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_msa /<>/obj-x86_64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/gff_io/CMakeFiles/test_gff_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_gff_io make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_utils.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_align/CMakeFiles/test_graph_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_msa/CMakeFiles/test_graph_msa.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target test_graph_algorithms make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_types.dir/DependInfo.cmake --color= [ 19%] Built target test_graph_align make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build [ 19%] Built target test_graph_msa make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/DependInfo.cmake --color= make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_derived.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_types.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_types_utils make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/graph_types /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/graph_types /<>/obj-x86_64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_graph_types_types make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/depend [ 19%] Built target test_graph_types_iterators make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_swift.dir/DependInfo.cmake --color= make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build [ 19%] Built target test_graph_types_derived make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake --color= make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build [ 19%] Built target test_graph_types_property_map make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_swift.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_find2_index_approx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_find_backtracking.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target test_index_swift make -f tests/index/CMakeFiles/test_index_stree_iterators.dir/build.make tests/index/CMakeFiles/test_index_stree_iterators.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_stree_iterators.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build [ 20%] Built target test_find2_index_approx [ 20%] Built target test_find_backtracking make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/depend make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_view.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_stree_iterators.dir/build.make tests/index/CMakeFiles/test_index_stree_iterators.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/build [ 20%] Built target test_index_view make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_stree_iterators.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_repeats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_vstree.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target test_index_stree_iterators make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/build make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend [ 21%] Built target test_index_repeats make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend [ 22%] Built target test_index_vstree make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_bifm.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_creation.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build [ 22%] Built target test_index_creation make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/build make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_bifm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build [ 22%] Built target test_index_crosscompare_char_dfi [ 22%] Built target test_index_sa_bwtwalk make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/depend make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/DependInfo.cmake --color= [ 22%] Built target test_index_bifm make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_qgram.dir/build'. make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake --color= [ 22%] Built target test_index_qgram make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_finder.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build [ 22%] Built target test_index_crosscompare_dna make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend [ 22%] Built target test_index_finder make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake --color= [ 22%] Built target test_index_fm_rank_dictionary make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_shapes.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build [ 22%] Built target test_index_shapes make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_fm_sparse_string.dir/DependInfo.cmake --color= make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_char.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_drawing.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target test_index_crosscompare_char make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake --color= [ 23%] Built target test_index_drawing [ 23%] Built target test_index_crosscompare_dna_dfi make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/depend make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/index /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/index /<>/obj-x86_64-linux-gnu/tests/index/CMakeFiles/test_index_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_set /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_set /<>/obj-x86_64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build [ 23%] Built target test_index_fm_sparse_string make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_set/CMakeFiles/test_journaled_set.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target test_index_fm make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build [ 23%] Built target test_journaled_set make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake --color= [ 24%] Built target test_index_base make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build [ 24%] Built target test_journaled_string_tree_find make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree /<>/obj-x86_64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/DependInfo.cmake --color= make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_journaled_string_tree_traverser make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/map /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/map /<>/obj-x86_64-linux-gnu/tests/map/CMakeFiles/test_map.dir/DependInfo.cmake --color= [ 24%] Built target test_delta_map make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/misc /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/misc /<>/obj-x86_64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake --color= [ 24%] Built target test_journaled_string_tree make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/modifier /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/modifier /<>/obj-x86_64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/map/CMakeFiles/test_map.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_basic_observable make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/misc/CMakeFiles/test_misc.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/modifier_cyclic_shape /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/modifier_cyclic_shape /<>/obj-x86_64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/modifier/CMakeFiles/test_modifier.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target test_map make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend [ 24%] Built target test_misc make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/parallel /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/parallel /<>/obj-x86_64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake --color= [ 25%] Built target test_modifier make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/multiple_translation_units /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/multiple_translation_units /<>/obj-x86_64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/parse_lm /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/parse_lm /<>/obj-x86_64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build [ 25%] Built target test_modifier_cyclic_shape make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/parallel/CMakeFiles/test_parallel.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/pipe /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/pipe /<>/obj-x86_64-linux-gnu/tests/pipe/CMakeFiles/test_pipe.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build [ 25%] Built target test_parallel make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/parse_lm/CMakeFiles/test_parse_lm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/platform /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/platform /<>/obj-x86_64-linux-gnu/tests/platform/CMakeFiles/test_platform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/build [ 25%] Built target test_parse_lm make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/pipe/CMakeFiles/test_pipe.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/random /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/random /<>/obj-x86_64-linux-gnu/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/platform/CMakeFiles/test_platform.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target test_pipe make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/depend [ 25%] Built target test_multiple_translation_units make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/build [ 26%] Built target test_platform make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/realign /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/realign /<>/obj-x86_64-linux-gnu/tests/realign/CMakeFiles/test_realign.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/reduced_aminoacid /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/reduced_aminoacid /<>/obj-x86_64-linux-gnu/tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/random/CMakeFiles/test_random.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/rna_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/rna_io /<>/obj-x86_64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/build [ 26%] Built target test_random make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/roi_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/roi_io /<>/obj-x86_64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/realign/CMakeFiles/test_realign.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/rna_io/CMakeFiles/test_rna_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build [ 26%] Built target test_reduced_aminoacid [ 26%] Built target test_realign make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/depend make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/depend [ 26%] Built target test_rna_io make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/score /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/score /<>/obj-x86_64-linux-gnu/tests/score/CMakeFiles/test_score.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/roi_io/CMakeFiles/test_roi_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_combination.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_extension.dir/DependInfo.cmake --color= [ 26%] Built target test_roi_io make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/build make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/score/CMakeFiles/test_score.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_combination.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_extension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build [ 27%] Built target test_score make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/depend [ 27%] Built target test_seeds_combination make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/DependInfo.cmake --color= [ 27%] Built target test_seeds_extension make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build [ 27%] Built target test_seeds_seed_base make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build [ 27%] Built target test_seeds_global_chaining make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/depend [ 28%] Built target test_seeds_seed_chained make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend [ 28%] Built target test_seeds_seed_diagonal make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seeds /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seeds /<>/obj-x86_64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake --color= [ 28%] Built target test_seeds_seed_set_unordered make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/seq_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/seq_io /<>/obj-x86_64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake --color= make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/build [ 28%] Built target test_seeds_align_banded_chain_impl make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/seq_io/CMakeFiles/test_seq_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_seeds_banded_chain_alignment_interface make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence /<>/obj-x86_64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake --color= [ 28%] Built target test_seeds_seed_set_base make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence /<>/obj-x86_64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence /<>/obj-x86_64-linux-gnu/tests/sequence/CMakeFiles/test_sequence.dir/DependInfo.cmake --color= [ 28%] Built target test_seq_io make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/sequence_journaled /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/sequence_journaled /<>/obj-x86_64-linux-gnu/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_stringset_v2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_sequence_v2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_sequence.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target test_stringset_v2 make -f tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build'. [ 28%] Built target test_sequence_v2 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/DependInfo.cmake --color= [ 28%] Built target test_sequence make -f tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/DependInfo.cmake --color= [ 29%] Built target test_sequence_journaled make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/build make -f tests/simd/CMakeFiles/test_simd_vector_avx2.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_avx2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector_avx512_cnl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector_avx512_skx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target test_simd_vector_avx512_cnl make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector_avx512_knl.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector_avx2.dir/build.make tests/simd/CMakeFiles/test_simd_vector_avx2.dir/build make -f tests/simd/CMakeFiles/test_simd_vector_sse4.dir/build.make tests/simd/CMakeFiles/test_simd_vector_sse4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector_sse4.dir/DependInfo.cmake --color= [ 29%] Built target test_simd_vector_avx512_skx make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector_avx2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simd /<>/obj-x86_64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector.dir/DependInfo.cmake --color= [ 29%] Built target test_simd_vector_avx512_knl make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/simple_intervals_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/simple_intervals_io /<>/obj-x86_64-linux-gnu/tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target test_simd_vector_avx2 make -f tests/simd/CMakeFiles/test_simd_vector_sse4.dir/build.make tests/simd/CMakeFiles/test_simd_vector_sse4.dir/build make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector_sse4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/statistics /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/statistics /<>/obj-x86_64-linux-gnu/tests/statistics/CMakeFiles/test_statistics.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build [ 30%] Built target test_simd_vector_sse4 make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/build [ 30%] Built target test_simd_vector make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/store /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/store /<>/obj-x86_64-linux-gnu/tests/store/CMakeFiles/test_store.dir/DependInfo.cmake --color= make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/stream /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/stream /<>/obj-x86_64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake --color= [ 30%] Built target test_simple_intervals_io make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/statistics/CMakeFiles/test_statistics.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/swift_local /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/swift_local /<>/obj-x86_64-linux-gnu/tests/swift_local/CMakeFiles/test_find_swift.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/build [ 30%] Built target test_statistics make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/stream/CMakeFiles/test_stream.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/store/CMakeFiles/test_store.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/tabix_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/tabix_io /<>/obj-x86_64-linux-gnu/tests/tabix_io/CMakeFiles/test_tabix_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/build [ 30%] Built target test_stream [ 30%] Built target test_store make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/depend make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/translation /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/translation /<>/obj-x86_64-linux-gnu/tests/translation/CMakeFiles/test_translation.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/ucsc_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/ucsc_io /<>/obj-x86_64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/swift_local/CMakeFiles/test_find_swift.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/tabix_io/CMakeFiles/test_tabix_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/build [ 30%] Built target test_find_swift make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests/vcf_io /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests/vcf_io /<>/obj-x86_64-linux-gnu/tests/vcf_io/CMakeFiles/test_vcf_io.dir/DependInfo.cmake --color= [ 31%] Built target test_tabix_io make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/translation/CMakeFiles/test_translation.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/build [ 31%] Built target test_translation [ 31%] Built target test_ucsc_io make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'tests/vcf_io/CMakeFiles/test_vcf_io.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target test_vcf_io make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution4 cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/DependInfo.cmake --color= [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution3 [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build [ 31%] Built target demo_unassigned_or_unused_tutorials_custim_io_example1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/depend [ 32%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/DependInfo.cmake --color= [ 32%] Built target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters [ 32%] Built target demo_unassigned_or_unused_tutorial_sequence_replace_as make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/DependInfo.cmake --color= [ 34%] Built target demo_unassigned_or_unused_segmentalignment make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/depend [ 34%] Built target demo_unassigned_or_unused_sam2svg [ 35%] Built target demo_unassigned_or_unused_sample_seqs make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_modifier_modview make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_parse_lm_stellar make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/DependInfo.cmake --color= [ 35%] Built target demo_unassigned_or_unused_modifier_modreverse make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/DependInfo.cmake --color= [ 35%] Built target demo_unassigned_or_unused_index_qgram_counts make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target demo_unassigned_or_unused_index_node_predicate [ 36%] Built target demo_unassigned_or_unused_index_mums make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/DependInfo.cmake --color= [ 36%] Built target demo_unassigned_or_unused_index_lcp make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/depend [ 36%] Built target demo_unassigned_or_unused_index_find make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build [ 36%] Built target demo_unassigned_or_unused_file_speed make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_file_readwrite make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 36%] Built target demo_unassigned_or_unused_file_format make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build [ 36%] Built target demo_unassigned_or_unused_benchmark_stream make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build [ 37%] Built target demo_unassigned_or_unused_bamutil make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/DependInfo.cmake --color= [ 37%] Built target demo_unassigned_or_unused_bam_print_alignments [ 37%] Built target demo_unassigned_or_unused_bam_library_size make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/depend make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build [ 37%] Built target demo_unassigned_or_unused_arg_align make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/depend make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build [ 37%] Built target demo_unassigned_or_unused_alphabet make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build [ 37%] Built target demo_tutorial_vcf_io_solution2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target demo_tutorial_vcf_io_solution3 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build [ 39%] Built target demo_tutorial_string_sets_example_functionality_2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target demo_tutorial_string_sets_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/DependInfo.cmake --color= [ 39%] Built target demo_tutorial_string_sets_assignment_2_solution [ 39%] Built target demo_tutorial_string_sets_assignment_2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build'. make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build [ 40%] Built target demo_tutorial_string_sets_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake --color= [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution3 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/depend [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution4 make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build [ 40%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build [ 41%] Built target demo_unassigned_or_unused_minimapper make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend [ 42%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 [ 42%] Built target demo_unassigned_or_unused_find_wild make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/depend make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build [ 42%] Built target demo_tutorial_simple_rna_seq_genequant_assignment4 make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_in_depth_base make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/DependInfo.cmake --color= [ 42%] Built target demo_tutorial_simple_rna_seq_genequant_assignment3 make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/DependInfo.cmake --color= [ 42%] Built target demo_tutorial_simple_rna_seq_genequant_assignment1 make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/depend [ 42%] Built target demo_unassigned_or_unused_iterator make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/build [ 42%] Built target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequences_example_segments make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/DependInfo.cmake --color= [ 42%] Built target demo_tutorial_sequences_base make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend [ 42%] Built target demo_tutorial_sequences_example_conversions_copy make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build [ 42%] Built target demo_tutorial_sequences_assignment_5_solution make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake --color= [ 42%] Built target demo_tutorial_sequences_assignment_3 make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/DependInfo.cmake --color= [ 42%] Built target demo_tutorial_sequences_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/depend [ 42%] Built target demo_tutorial_sequences_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build [ 42%] Built target demo_tutorial_sequence_io_solution3 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/DependInfo.cmake --color= [ 42%] Built target demo_tutorial_sequence_io_example1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 42%] Built target demo_tutorial_sequence_io_base make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake --color= [ 42%] Built target demo_tutorial_seeds_example1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/depend make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 43%] Built target demo_tutorial_seed_and_extend_solution6 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/DependInfo.cmake --color= [ 43%] Built target demo_tutorial_seed_and_extend_solution5 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend [ 43%] Built target demo_tutorial_seed_and_extend_solution2 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake --color= [ 43%] Built target demo_unassigned_or_unused_sequence_length make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target demo_tutorial_seed_and_extend_example6 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/DependInfo.cmake --color= [ 44%] Built target demo_tutorial_seed_and_extend_example5 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend [ 44%] Built target demo_tutorial_seed_and_extend_example4 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake --color= [ 44%] Built target demo_tutorial_seed_and_extend_example3 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build [ 44%] Built target demo_unassigned_or_unused_tutorials_custim_io_reader_demo make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target demo_tutorial_seed_and_extend_example1 [ 45%] Built target demo_tutorial_sam_and_bam_io_solution3 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build [ 45%] Built target demo_tutorial_sam_and_bam_io_solution2 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build [ 46%] Built target demo_tutorial_simple_rna_seq_base make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build'. make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/DependInfo.cmake --color= [ 46%] Built target demo_unassigned_or_unused_modifier_nested [ 46%] Built target demo_tutorial_sam_and_bam_io_solution1 [ 46%] Built target demo_tutorial_sam_and_bam_io_example2 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/depend make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/depend make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build [ 46%] Built target demo_tutorial_sam_and_bam_io_example1 make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 46%] Built target demo_tutorial_sam_and_bam_io_base make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_realignment_step2 make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/depend [ 47%] Built target demo_tutorial_realignment_step1 make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_q_gram_index_index_assignment6 make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_pattern_matching_find_exact make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/depend [ 47%] Built target demo_unassigned_or_unused_tutorial_file_io_solution1 make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_length_countSequences.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build [ 47%] Built target demo_tutorial_alignment_scoring_scheme_matrix make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build [ 47%] Built target demo_tutorial_sequences_in_depth_example_overflow make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 47%] Built target demo_tutorial_graph_graph_dijkstra [ 47%] Built target demo_dox_index_length_countSequences make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/depend make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build [ 47%] Built target demo_tutorial_alignment_align_assignment1 make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build [ 47%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph.dir/DependInfo.cmake --color= [ 47%] Built target demo_tutorial_vcf_io_base make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/DependInfo.cmake --color= [ 48%] Built target demo_tutorial_a_first_example_example_tempSubclassing make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/depend [ 48%] Built target demo_tutorial_pattern_matching_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build [ 50%] Built target demo_tutorial_generic_programming_template_subclassing make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_alignment_graph make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake --color= [ 50%] Built target demo_tutorial_sequence_io_solution4 make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend [ 50%] Built target demo_tutorial_sequence_io_solution1 make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_multiple_sequence_alignment_msa make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_howto_filter_similar_sequences make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/DependInfo.cmake --color= [ 50%] Built target demo_tutorial_a_first_example_basic_code make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend [ 50%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/build [ 50%] Built target demo_howto_efficiently_import_sequences make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_load_score.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_dox_bed_io_UNUSED_bed_stream_read make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/depend [ 50%] Built target demo_tutorial_a_first_example_final_result make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/DependInfo.cmake --color= [ 50%] Built target demo_howto_scores_load_score make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build [ 50%] Built target demo_tutorial_gff_and_gtf_io_solution3 make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target demo_tutorial_sequences_example_functionality1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/depend [ 51%] Built target demo_tutorial_iterators_assignment_3_workshop make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake --color= [ 51%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_string2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build [ 51%] Built target demo_dox_sequence_string2 make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/depend [ 51%] Built target demo_dox_sequence_UNUSED_prefix make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/DependInfo.cmake --color= [ 51%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution [ 51%] Built target demo_dox_statistics_build_markov_model make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/depend make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_dox_seeds_seeds_extension make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/depend [ 51%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build [ 51%] Built target demo_dox_seeds_seeds_add_seed make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_a_first_example_solution_3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/build make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_stringset.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 51%] Built target demo_tutorial_basics_show_alphabets make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/DependInfo.cmake --color= [ 51%] Built target demo_tutorial_seed_and_extend_solution3 make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_parallel_queue_example.dir/DependInfo.cmake --color= [ 52%] Built target demo_dox_sequence_stringset make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target demo_dox_sequence_container_view_zip make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/depend make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/DependInfo.cmake --color= [ 53%] Built target demo_dox_pipe_pool_sorter make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string.dir/DependInfo.cmake --color= [ 53%] Built target demo_dox_parallel_queue_example make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build [ 54%] Built target demo_tutorial_a_first_example_base make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 54%] Built target demo_dox_modifier_modified_string_mod_view make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake --color= [ 54%] Built target demo_dox_modifier_modified_string make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/depend [ 55%] Built target demo_dox_modifier_cyclic_shape_snippets make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target demo_tutorial_seed_and_extend_example7 make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/DependInfo.cmake --color= [ 55%] Built target demo_dox_graph_align_graph_align make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend [ 55%] Built target demo_tutorial_gff_and_gtf_io_example2 make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend [ 56%] Built target demo_dox_index_supermaxrepeats make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_dox_modifier_cyclic_shape make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/depend [ 56%] Built target demo_unassigned_or_unused_soft_to_hard_masking make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/DependInfo.cmake --color= [ 56%] Built target demo_tutorial_gff_and_gtf_io_example1 make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/depend [ 56%] Built target demo_dox_consensus_consensus_alignment make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build [ 56%] Built target demo_tutorial_string_sets_example_functionality make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend [ 56%] Built target demo_dox_misc_enumerate_strings make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 56%] Built target demo_dox_stream_lexical_cast make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake --color= [ 57%] Built target demo_tutorial_index_iterators_index_preorder make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build [ 58%] Built target demo_tutorial_graph_graph_algo_scc make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 59%] Built target demo_tutorial_simple_rna_seq_genequant_assignment5 [ 59%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake --color= [ 60%] Built target demo_tutorial_a_first_example_solution_5 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 60%] Built target demo_dox_parallel_splitter_example make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build [ 61%] Built target demo_dox_sequence_UNUSED_infix [ 61%] Built target demo_tutorial_basics_allocator make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/depend make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build [ 61%] Built target demo_dox_index_shape_hash_init make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_indexed_fasta_io_solution2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake --color= [ 61%] Built target demo_dox_seq_io_fai_index_example make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend [ 61%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build [ 61%] Built target demo_unassigned_or_unused_seeds make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_node_predicate.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build [ 61%] Built target demo_tutorial_sequences_assignment_3_solution make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend [ 61%] Built target demo_dox_index_node_predicate make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mums.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_dox_index_mums make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 61%] Built target demo_tutorial_bed_io_example1 make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake --color= [ 61%] Built target demo_tutorial_a_first_example_basic_code_detailed make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_enable_if.dir/DependInfo.cmake --color= [ 61%] Built target demo_tutorial_file_io_overview_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_enable_if.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build [ 61%] Built target demo_tutorial_parsing_command_line_arguments_final_solution make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend [ 61%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/DependInfo.cmake --color= [ 61%] Built target demo_dox_basic_enable_if make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build [ 62%] Built target demo_unassigned_or_unused_filter_sam make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_store_store_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake --color= [ 63%] Built target demo_tutorial_seed_and_extend_solution1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/depend [ 63%] Built target demo_dox_store_store_example make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/DependInfo.cmake --color= [ 63%] Built target demo_dox_graph_algorithms_dag_shortest_path make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build [ 63%] Built target demo_dox_misc_interval_tree_example make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_maxrepeats.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target demo_tutorial_a_first_example_code_encapsulation make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/depend [ 63%] Built target demo_unassigned_or_unused_gff2gtf make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake --color= [ 64%] Built target demo_dox_bam_io_bam_tags_dict make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_online.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build [ 64%] Built target demo_dox_index_maxrepeats make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_finder.dir/build'. make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_find_finder_online make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend [ 64%] Built target demo_dox_index_finder make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/DependInfo.cmake --color= [ 64%] Built target demo_dox_index_begin_range_goDown_representative_repLength make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target demo_dox_basic_metaprogramming_math make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build [ 64%] Built target demo_dox_modifier_modified_string_nested make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/DependInfo.cmake --color= [ 64%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/build [ 64%] Built target demo_dox_align_extend_extend_alignment make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build [ 64%] Built target demo_dox_graph_algorithms_kruskals_algorithm make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_integrate_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target demo_dox_align_integrate_align make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/build [ 65%] Built target demo_tutorial_a_first_example_solution_4 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator_short.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build [ 67%] Built target demo_dox_basic_zip_iterator make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build [ 67%] Built target demo_dox_index_iterator_short make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/depend make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target demo_tutorial_iterators_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/depend [ 67%] Built target demo_tutorial_genome_annotations_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target demo_tutorial_gff_and_gtf_io_solution1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build [ 67%] Built target demo_dox_graph_types_graph_algo_dijkstra make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build [ 67%] Built target demo_tutorial_a_first_example_solution_6 [ 68%] Built target demo_tutorial_pattern_matching_assignment2 make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/depend make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake --color= [ 68%] Built target demo_dox_basic_metaprogramming_logic make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake --color= [ 69%] Built target demo_tutorial_journaled_set_example_journal_string_basic make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_tutorial_a_first_example_solution_1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target demo_tutorial_genome_annotations_base make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/depend [ 69%] Built target demo_dox_basic_metaprogramming_control make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build [ 69%] Built target demo_dox_graph_algorithms_transitive_closure make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_score_score.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target demo_dox_graph_algorithms_prims_algorithm make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake --color= [ 70%] Built target demo_tutorial_alignment_align make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/depend [ 70%] Built target demo_dox_score_score make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/DependInfo.cmake --color= [ 71%] Built target demo_tutorial_sequences_assignment_4_solution make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build [ 71%] Built target demo_howto_align_gaps_clipping make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_mummy.dir/DependInfo.cmake --color= [ 71%] Built target demo_dox_find_finder_aho_corasick make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/DependInfo.cmake --color= [ 71%] Built target demo_dox_index_UNUSED_shape make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/DependInfo.cmake --color= [ 71%] Built target demo_tutorial_q_gram_index_index_qgram_hash make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mummy.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target demo_dox_graph_algorithms_depth_first_search make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend [ 72%] Built target demo_dox_index_mummy make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend [ 72%] Built target demo_dox_graph_algorithms_dijkstra make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake --color= [ 72%] Built target demo_dox_misc_name_store_cache make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target demo_dox_align_global_alignment_unbanded [ 72%] Built target demo_unassigned_or_unused_index_find_stringset make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend [ 72%] Built target demo_tutorial_vcf_io_solution1 [ 73%] Built target demo_blast_blast_in_lowlevel make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_string.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_sequence_string [ 73%] Built target demo_unassigned_or_unused_rooted_iterator make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend [ 73%] Built target demo_howto_using_zip_iterator make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/depend make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_align_align cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_tutorial_indices_find2_index_approx make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend [ 73%] Built target demo_unassigned_or_unused_annotation_converter [ 73%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend [ 73%] Built target demo_dox_align_profile_profile_seq_score make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_dox_basic_simple_type_construction make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_find_repeats.dir/DependInfo.cmake --color= [ 73%] Built target demo_dox_align_compute_alignment_stats make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend [ 73%] Built target demo_tutorial_indices_assignment_1 make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake --color= [ 73%] Built target demo_unassigned_or_unused_index_sufarray make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_find_repeats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/depend [ 74%] Built target demo_dox_index_find_repeats [ 74%] Built target demo_dox_graph_algorithms_heaviest_increasing_subsequence make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake --color= [ 74%] Built target demo_dox_statistics_load_markov_model make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_tutorial_basic_techniques_base make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_tutorial_sam_and_bam_io_example7 make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/depend [ 74%] Built target demo_tutorial_journaled_set_example_join make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/DependInfo.cmake --color= [ 74%] Built target demo_tutorial_parsing_command_line_arguments_base make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_counting.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_dox_index_counting make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target demo_unassigned_or_unused_benchmark_stream_write [ 74%] Built target demo_dox_bam_io_bam_file_in make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/depend make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build [ 75%] Built target demo_tutorial_indices_base make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_strings.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 75%] Built target demo_dox_graph_algorithms_breadth_first_search make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 76%] Built target demo_tutorial_basics_strings make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend [ 77%] Built target demo_dox_graph_algorithms_floyd_warshall_algorithm make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake --color= [ 77%] Built target demo_tutorial_bed_io_base make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target demo_dox_sequence_UNUSED_suffix make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target demo_dox_misc_get_terminal_size make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend [ 78%] Built target demo_tutorial_sequence_io_solution2 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target demo_tutorial_indexed_fasta_io_base cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build [ 78%] Built target demo_dox_graph_algorithms_longest_common_subsequence make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target demo_tutorial_file_io_overview_solution2 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/depend [ 79%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 [ 79%] Built target demo_dox_graph_algorithms_longest_increasing_subsequence make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build [ 79%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tabix_io_tabix_vcf make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake --color= [ 79%] Built target demo_tutorial_pattern_matching_find_index make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/depend [ 79%] Built target demo_tutorial_alignment_graph_assignment1 make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build [ 79%] Built target demo_dox_graph_algorithms_ford_fulkerson_algorithm make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/DependInfo.cmake --color= [ 79%] Built target demo_tutorial_bed_io_solution2 make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/depend [ 79%] Built target demo_dox_graph_algorithms_topological_sort [ 79%] Built target demo_dox_graph_algorithms_strongly_connected_components make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/depend make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_seed_and_extend_example2 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build'. make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake --color= [ 79%] Built target demo_tutorial_string_sets_base make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend [ 79%] Built target demo_dox_align_split_split_alignment make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake --color= [ 79%] Built target demo_dox_index_begin_atEnd_representative_bottomUp make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_custom_file_endings.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build [ 79%] Built target demo_tutorial_a_first_example_example_tags make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_custom_file_endings.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target demo_tutorial_index_iterators_iterator_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/depend [ 80%] Built target demo_dox_index_UNUSED_shape_hash make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/DependInfo.cmake --color= [ 81%] Built target demo_howto_custom_file_endings make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build [ 81%] Built target demo_dox_index_begin_atEnd_representative make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_open_save.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake --color= [ 81%] Built target demo_unassigned_or_unused_graph_hmm_silent make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/DependInfo.cmake --color= [ 81%] Built target demo_tutorial_iterators_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend [ 81%] Built target demo_dox_index_open_save make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_index_iterators_index_property_maps make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/DependInfo.cmake --color= [ 81%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake --color= [ 81%] Built target demo_dox_index_iterator make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake --color= [ 81%] Built target demo_dox_align_profile_profile_seq_frac_score make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_dox_basic_metaprogramming_switch make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_string_sets_example_iterators make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build [ 81%] Built target demo_tutorial_indexed_fasta_io_solution1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend [ 81%] Built target demo_tutorial_alphabets_assignment_1_solution make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build [ 81%] Built target demo_tutorial_alphabets_example_bitsPerValue make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target demo_tutorial_blast_io_read_assignment make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/depend [ 81%] Built target demo_tutorial_a_first_example_solution_2 make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/DependInfo.cmake --color= [ 81%] Built target demo_tutorial_seed_and_extend_solution4 make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/DependInfo.cmake --color= [ 81%] Built target demo_tutorial_alphabets_assignment_1 make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build [ 82%] Built target demo_tutorial_alphabets_example_size [ 82%] Built target demo_tutorial_background_and_motivation_example make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/DependInfo.cmake --color= [ 82%] Built target demo_tutorial_basics_base make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/DependInfo.cmake --color= [ 82%] Built target demo_tutorial_bed_io_solution1 make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build [ 84%] Built target demo_tutorial_gff_and_gtf_io_base make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target demo_tutorial_index_iterators_index_search make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/DependInfo.cmake --color= [ 84%] Built target demo_tutorial_consensus_alignment_without_positions make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/depend [ 84%] Built target demo_tutorial_file_io_overview_example1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target demo_tutorial_parsing_command_line_arguments_example_with_own_function make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target demo_tutorial_pattern_matching_find_index_multiple make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake --color= [ 85%] Built target demo_tutorial_vcf_io_example1 make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/depend [ 85%] Built target demo_tutorial_pattern_matching_assignment1_solution make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build [ 86%] Built target demo_tutorial_file_io_overview_solution3 make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake --color= [ 86%] Built target demo_tutorial_iterators_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/DependInfo.cmake --color= [ 86%] Built target demo_tutorial_sequences_assignment_6_solution make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/depend [ 86%] Built target demo_tutorial_fragment_store_access_aligned_reads make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build [ 86%] Built target demo_tutorial_fragment_store_access_aligned_reads2 make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/DependInfo.cmake --color= [ 86%] Built target demo_tutorial_fragment_store_base make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/DependInfo.cmake --color= [ 86%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_banded make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_fragment_store_display_aligned_reads make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_index.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/build [ 86%] Built target demo_tutorial_iterators_sequence_iterator_demo [ 86%] Built target demo_tutorial_alphabets_example_ordValue make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_index.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_generic_programming_example_hashing make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build [ 86%] Built target demo_dox_find_finder_index make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_base.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target demo_tutorial_genome_annotations_assignment_1_hint [ 87%] Built target demo_tutorial_index_iterators_iterator_solution2 make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend [ 87%] Built target demo_tutorial_sequences_example_comparisons make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/depend make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/DependInfo.cmake --color= [ 87%] Built target demo_tutorial_iterators_base make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_genome_annotations_assignment_3_solution [ 87%] Built target demo_tutorial_genome_annotations_assignment_1_solution [ 87%] Built target demo_tutorial_genome_annotations_assignment_4_solution make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/depend make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_gff_and_gtf_io_solution2 cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake --color= [ 87%] Built target demo_tutorial_graph_graph_hmm make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/depend [ 87%] Built target demo_dox_index_UNUSED_shape_hash_next make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/DependInfo.cmake --color= [ 87%] Built target demo_tutorial_index_iterators_iterator_solution3 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_graph_solution_1 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_alignment_scoring_scheme_simple make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/depend [ 87%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 [ 87%] Built target demo_dox_seeds_seeds_chaining make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_parsing_command_line_arguments_assignment4_solution make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_index_assignment1 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/DependInfo.cmake --color= [ 87%] Built target demo_tutorial_index_iterators_index_assignment2 make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/DependInfo.cmake --color= [ 87%] Built target demo_tutorial_index_iterators_index_bidirectional_search make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build [ 87%] Built target demo_tutorial_consensus_alignment_with_positions make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake --color= [ 87%] Built target demo_tutorial_index_iterators_index_search2 make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/DependInfo.cmake --color= [ 87%] Built target demo_dox_arg_parse_argument_parser make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend [ 87%] Built target demo_tutorial_modifiers_modreverse make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_dox_graph_algorithms_bellman_ford_algorithm make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_index_iterators_iterator_assignment2 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/depend [ 87%] Built target demo_tutorial_indices_assignment_2 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/DependInfo.cmake --color= [ 87%] Built target demo_tutorial_indices_fm_index make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build [ 87%] Built target demo_tutorial_iterators_assignment_1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build [ 87%] Built target demo_tutorial_iterators_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target demo_tutorial_journaled_set_base make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build [ 87%] Built target demo_tutorial_journaled_set_example_online_search make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build [ 88%] Built target demo_tutorial_parsing_command_line_arguments_example_with_struct make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_journaled_set_example_online_search_assignment1_hint make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake --color= [ 88%] Built target demo_tutorial_q_gram_index_index_assignment5 make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_assignment1 make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_segment.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_gaps_example.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build [ 88%] Built target demo_dox_align_gaps_example [ 88%] Built target demo_unassigned_or_unused_index_supermaxrepeats make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_segment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/DependInfo.cmake --color= [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_assignment2 make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/depend [ 88%] Built target demo_dox_sequence_segment make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target demo_tutorial_journaled_set_solution_online_search_finder make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake --color= [ 88%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/depend [ 88%] Built target demo_tutorial_metafunctions_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/DependInfo.cmake --color= [ 89%] Built target demo_tutorial_sequences_example_conversions_move make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target demo_tutorial_metafunctions_base make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build [ 89%] Built target demo_tutorial_seeds_solution1 make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build [ 90%] Built target demo_tutorial_blast_io_write_assignment make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target demo_tutorial_modifiers_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake --color= [ 91%] Built target demo_tutorial_modifiers_assignment1_solution make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target demo_dox_gff_io_UNUSED_gff_stream_read make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/build [ 92%] Built target demo_tutorial_modifiers_modview make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_sufarray.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build [ 92%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build [ 92%] Built target demo_dox_index_sufarray make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake --color= [ 92%] Built target demo_tutorial_modifiers_nested make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build [ 92%] Built target demo_tutorial_workflows_knime_node make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/depend make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/DependInfo.cmake --color= [ 92%] Built target demo_tutorial_multiple_sequence_alignment_assignment1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/depend [ 93%] Built target demo_tutorial_parsing_command_line_arguments_example_with_modifyString make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build [ 94%] Built target demo_tutorial_multiple_sequence_alignment_consensus make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build [ 95%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution2 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_dox_index_textAt_indexText_saAt_indexRequire make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/depend [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/DependInfo.cmake --color= [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build [ 95%] Built target demo_tutorial_pattern_matching_assignment2_solution make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_sequences_example_functionality2 [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/depend make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/DependInfo.cmake --color= [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build [ 95%] Built target demo_tutorial_a_first_example_example_tags_for_print make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/DependInfo.cmake --color= [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build [ 95%] Built target demo_dox_align_global_alignment_banded make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake --color= [ 95%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/DependInfo.cmake --color= [ 95%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build [ 96%] Built target demo_tutorial_parsing_command_line_arguments_assignment3_solution make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_init_score.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_howto_scores_init_score make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/DependInfo.cmake --color= [ 96%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build [ 96%] Built target demo_tutorial_parsing_command_line_arguments_example1 make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build [ 96%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution1 make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/DependInfo.cmake --color= [ 96%] Built target demo_tutorial_pattern_matching_assignment1 make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake --color= [ 96%] Built target demo_tutorial_simple_rna_seq_interval_tree make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/demos /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/demos /<>/obj-x86_64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_pattern_matching_assignment3 make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/alf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/alf /<>/obj-x86_64-linux-gnu/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target demo_tutorial_q_gram_index_index_qgram make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend [ 96%] Built target demo_tutorial_bed_io_solution3 make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/bs_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/bs_tools /<>/obj-x86_64-linux-gnu/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/bs_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/bs_tools /<>/obj-x86_64-linux-gnu/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= [ 96%] Built target demo_tutorial_pattern_matching_find_approx make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/bs_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/bs_tools /<>/obj-x86_64-linux-gnu/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/alf/CMakeFiles/alf.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/four2three.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build [ 96%] Built target alf make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/casbar.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/bisar.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target four2three make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/dfi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/dfi /<>/obj-x86_64-linux-gnu/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fiona /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fiona /<>/obj-x86_64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= [ 96%] Built target casbar make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend [ 96%] Built target bisar make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fiona /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fiona /<>/obj-x86_64-linux-gnu/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fiona /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fiona /<>/obj-x86_64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/dfi/CMakeFiles/dfi.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target dfi make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/compute_gain.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fx_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fx_tools /<>/obj-x86_64-linux-gnu/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= [ 96%] Built target fiona_illumina make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/fx_tools /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/fx_tools /<>/obj-x86_64-linux-gnu/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= [ 96%] Built target fiona [ 96%] Built target compute_gain make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/gustaf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/gustaf /<>/obj-x86_64-linux-gnu/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/gustaf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/gustaf /<>/obj-x86_64-linux-gnu/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target fx_fastq_stats make[3]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/insegt /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/insegt /<>/obj-x86_64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= [ 97%] Built target fx_bam_coverage make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend [ 97%] Built target gustaf_mate_joining make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= [ 97%] Built target gustaf make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/insegt/CMakeFiles/insegt.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_genome.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build [ 97%] Built target insegt make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= [ 98%] Built target mason_genome make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= [ 98%] Built target mason_methylation make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= [ 98%] Built target mason_frag_sequencing make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_variator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build [ 98%] Built target mason_variator make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/mason2 /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/mason2 /<>/obj-x86_64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= [ 98%] Built target mason_materializer make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/micro_razers /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/micro_razers /<>/obj-x86_64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= [ 98%] Built target mason_splicing make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build [ 98%] Built target mason_simulator make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/ngs_roi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/ngs_roi /<>/obj-x86_64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_tests.dir/build'. make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/ngs_roi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/ngs_roi /<>/obj-x86_64-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target mason_tests make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/ngs_roi /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/ngs_roi /<>/obj-x86_64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= [100%] Built target micro_razers make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align/lib /<>/obj-x86_64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target roi_feature_projection make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bam2roi make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target roi_plot_thumbnails [100%] Built target pair_align_lib make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/apps/pair_align /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/apps/pair_align /<>/obj-x86_64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/CMakeFiles/pair_align.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target pair_align make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/obj-x86_64-linux-gnu Start 1: test_test_align Start 2: test_test_align_simd_global_equal_length Start 3: test_test_align_simd_global_equal_length_sse4_host Start 4: test_test_align_simd_global_equal_length_avx2_host 1/143 Test #1: test_test_align ............................................... Passed 0.01 sec Start 5: test_test_align_simd_global_equal_length_avx512_knl_host 2/143 Test #2: test_test_align_simd_global_equal_length ...................... Passed 0.06 sec Start 6: test_test_align_simd_global_equal_length_avx512_skx_host 3/143 Test #3: test_test_align_simd_global_equal_length_sse4_host ............ Passed 0.06 sec Start 7: test_test_align_simd_global_equal_length_avx512_cnl_host 4/143 Test #5: test_test_align_simd_global_equal_length_avx512_knl_host ...... Passed 0.06 sec Start 8: test_test_align_simd_global_variable_length 5/143 Test #4: test_test_align_simd_global_equal_length_avx2_host ............ Passed 0.08 sec Start 9: test_test_align_simd_global_variable_length_sse4_host 6/143 Test #7: test_test_align_simd_global_equal_length_avx512_cnl_host ...... Passed 0.05 sec Start 10: test_test_align_simd_global_variable_length_avx2_host 7/143 Test #8: test_test_align_simd_global_variable_length ................... Passed 0.05 sec Start 11: test_test_align_simd_global_variable_length_avx512_knl_host 8/143 Test #9: test_test_align_simd_global_variable_length_sse4_host ......... Passed 0.04 sec Start 12: test_test_align_simd_global_variable_length_avx512_skx_host 9/143 Test #6: test_test_align_simd_global_equal_length_avx512_skx_host ...... Passed 0.07 sec Start 13: test_test_align_simd_global_variable_length_avx512_cnl_host 10/143 Test #10: test_test_align_simd_global_variable_length_avx2_host ......... Passed 0.05 sec Start 14: test_test_align_simd_local_equal_length 11/143 Test #11: test_test_align_simd_global_variable_length_avx512_knl_host ... Passed 0.05 sec Start 15: test_test_align_simd_local_equal_length_sse4_host 12/143 Test #12: test_test_align_simd_global_variable_length_avx512_skx_host ... Passed 0.05 sec Start 16: test_test_align_simd_local_equal_length_avx2_host 13/143 Test #13: test_test_align_simd_global_variable_length_avx512_cnl_host ... Passed 0.05 sec Start 17: test_test_align_simd_local_equal_length_avx512_knl_host 14/143 Test #14: test_test_align_simd_local_equal_length ....................... Passed 0.02 sec Start 18: test_test_align_simd_local_equal_length_avx512_skx_host 15/143 Test #15: test_test_align_simd_local_equal_length_sse4_host ............. Passed 0.02 sec Start 19: test_test_align_simd_local_equal_length_avx512_cnl_host 16/143 Test #16: test_test_align_simd_local_equal_length_avx2_host ............. Passed 0.02 sec Start 20: test_test_align_simd_local_variable_length 17/143 Test #17: test_test_align_simd_local_equal_length_avx512_knl_host ....... Passed 0.02 sec Start 21: test_test_align_simd_local_variable_length_sse4_host 18/143 Test #18: test_test_align_simd_local_equal_length_avx512_skx_host ....... Passed 0.02 sec Start 22: test_test_align_simd_local_variable_length_avx2_host 19/143 Test #20: test_test_align_simd_local_variable_length .................... Passed 0.01 sec Start 23: test_test_align_simd_local_variable_length_avx512_knl_host 20/143 Test #19: test_test_align_simd_local_equal_length_avx512_cnl_host ....... Passed 0.02 sec Start 24: test_test_align_simd_local_variable_length_avx512_skx_host 21/143 Test #21: test_test_align_simd_local_variable_length_sse4_host .......... Passed 0.02 sec Start 25: test_test_align_simd_local_variable_length_avx512_cnl_host 22/143 Test #22: test_test_align_simd_local_variable_length_avx2_host .......... Passed 0.02 sec Start 26: test_test_align_extend 23/143 Test #23: test_test_align_simd_local_variable_length_avx512_knl_host .... Passed 0.02 sec Start 27: test_align_parallel_data_structures 24/143 Test #24: test_test_align_simd_local_variable_length_avx512_skx_host .... Passed 0.02 sec Start 28: test_test_align_parallel_interface 25/143 Test #26: test_test_align_extend ........................................ Passed 0.01 sec Start 29: test_test_align_parallel_interface_sse4_host 26/143 Test #25: test_test_align_simd_local_variable_length_avx512_cnl_host .... Passed 0.02 sec Start 30: test_test_align_parallel_interface_avx2_host 27/143 Test #27: test_align_parallel_data_structures ........................... Passed 0.05 sec Start 31: test_test_align_parallel_interface_avx512_knl_host 28/143 Test #28: test_test_align_parallel_interface ............................ Passed 0.14 sec Start 32: test_test_align_parallel_interface_avx512_skx_host 29/143 Test #29: test_test_align_parallel_interface_sse4_host .................. Passed 0.31 sec Start 33: test_test_align_parallel_interface_avx512_cnl_host 30/143 Test #30: test_test_align_parallel_interface_avx2_host .................. Passed 0.31 sec Start 34: test_test_align_parallel_algorithm 31/143 Test #31: test_test_align_parallel_interface_avx512_knl_host ............ Passed 0.34 sec Start 35: test_test_align_parallel_algorithm_sse4_host 32/143 Test #32: test_test_align_parallel_interface_avx512_skx_host ............ Passed 0.36 sec Start 36: test_test_align_parallel_algorithm_avx2_host 33/143 Test #33: test_test_align_parallel_interface_avx512_cnl_host ............ Passed 0.40 sec Start 37: test_test_align_parallel_algorithm_avx512_knl_host 34/143 Test #34: test_test_align_parallel_algorithm ............................ Passed 0.43 sec Start 38: test_test_align_parallel_algorithm_avx512_skx_host 35/143 Test #35: test_test_align_parallel_algorithm_sse4_host .................. Passed 0.62 sec Start 39: test_test_align_parallel_algorithm_avx512_cnl_host 36/143 Test #36: test_test_align_parallel_algorithm_avx2_host .................. Passed 0.57 sec Start 40: test_test_align_profile 37/143 Test #40: test_test_align_profile ....................................... Passed 0.00 sec Start 41: test_test_align_split 38/143 Test #41: test_test_align_split ......................................... Passed 0.02 sec Start 42: test_test_alignment_free 39/143 Test #37: test_test_align_parallel_algorithm_avx512_knl_host ............ Passed 0.56 sec Start 43: test_test_arg_parse 40/143 Test #43: test_test_arg_parse ........................................... Passed 0.01 sec Start 44: test_test_arg_parse_version_check 41/143 Test #44: test_test_arg_parse_version_check ............................. Passed 0.02 sec Start 45: test_test_bam_io 42/143 Test #38: test_test_align_parallel_algorithm_avx512_skx_host ............ Passed 0.59 sec Start 46: test_test_basic_exception 43/143 Test #46: test_test_basic_exception ..................................... Passed 0.01 sec Start 47: test_test_basic_metaprogramming 44/143 Test #47: test_test_basic_metaprogramming ............................... Passed 0.00 sec Start 48: test_test_basic_fundamental 45/143 Test #48: test_test_basic_fundamental ................................... Passed 0.00 sec Start 49: test_test_basic_concept 46/143 Test #49: test_test_basic_concept ....................................... Passed 0.00 sec Start 50: test_test_basic_alphabet 47/143 Test #50: test_test_basic_alphabet ...................................... Passed 0.01 sec Start 51: test_test_basic_aggregate 48/143 Test #51: test_test_basic_aggregate ..................................... Passed 0.01 sec Start 52: test_test_basic_allocator 49/143 Test #52: test_test_basic_allocator ..................................... Passed 0.00 sec Start 53: test_test_basic_parallelism 50/143 Test #53: test_test_basic_parallelism ................................... Passed 0.00 sec Start 54: test_test_basic_math 51/143 Test #54: test_test_basic_math .......................................... Passed 0.00 sec Start 55: test_test_basic_smart_pointer 52/143 Test #55: test_test_basic_smart_pointer ................................. Passed 0.01 sec Start 56: test_test_basic_container 53/143 Test #56: test_test_basic_container ..................................... Passed 0.03 sec Start 57: test_test_basic_proxy 54/143 Test #57: test_test_basic_proxy ......................................... Passed 0.01 sec Start 58: test_test_basic_iterator 55/143 Test #58: test_test_basic_iterator ...................................... Passed 0.02 sec Start 59: test_test_bed_io 56/143 Test #59: test_test_bed_io .............................................. Passed 0.02 sec Start 60: test_blast 57/143 Test #60: test_blast .................................................... Passed 0.04 sec Start 61: test_test_consensus 58/143 Test #39: test_test_align_parallel_algorithm_avx512_cnl_host ............ Passed 0.51 sec Start 62: test_test_consensus_v2 59/143 Test #61: test_test_consensus ........................................... Passed 0.06 sec Start 63: test_test_find 60/143 Test #62: test_test_consensus_v2 ........................................ Passed 0.21 sec Start 64: test_test_gff_io 61/143 Test #64: test_test_gff_io .............................................. Passed 0.02 sec Start 65: test_test_graph_algorithms 62/143 Test #65: test_test_graph_algorithms .................................... Passed 0.02 sec Start 66: test_test_graph_align 63/143 Test #66: test_test_graph_align ......................................... Passed 0.04 sec Start 67: test_test_graph_msa 64/143 Test #42: test_test_alignment_free ...................................... Passed 0.75 sec Start 68: test_test_graph_types_property_map 65/143 Test #68: test_test_graph_types_property_map ............................ Passed 0.01 sec Start 69: test_test_graph_types_derived 66/143 Test #69: test_test_graph_types_derived ................................. Passed 0.02 sec Start 70: test_test_graph_types_iterators 67/143 Test #70: test_test_graph_types_iterators ............................... Passed 0.02 sec Start 71: test_test_graph_types_types 68/143 Test #71: test_test_graph_types_types ................................... Passed 0.02 sec Start 72: test_test_graph_types_utils 69/143 Test #72: test_test_graph_types_utils ................................... Passed 0.01 sec Start 73: test_test_index_creation 70/143 Test #63: test_test_find ................................................ Passed 0.47 sec Start 74: test_test_index_crosscompare_char 71/143 Test #67: test_test_graph_msa ........................................... Passed 0.26 sec Start 75: test_test_index_crosscompare_char_dfi 72/143 Test #75: test_test_index_crosscompare_char_dfi ......................... Passed 0.00 sec Start 76: test_test_index_crosscompare_dna 73/143 Test #74: test_test_index_crosscompare_char ............................. Passed 0.04 sec Start 77: test_test_index_crosscompare_dna_dfi 74/143 Test #77: test_test_index_crosscompare_dna_dfi .......................... Passed 0.00 sec Start 78: test_test_index_qgram 75/143 Test #78: test_test_index_qgram ......................................... Passed 0.00 sec Start 79: test_test_index_sa_bwtwalk 76/143 Test #76: test_test_index_crosscompare_dna .............................. Passed 0.04 sec Start 80: test_test_index_shapes 77/143 Test #73: test_test_index_creation ...................................... Passed 0.20 sec Start 81: test_test_index_drawing 78/143 Test #80: test_test_index_shapes ........................................ Passed 0.01 sec Start 82: test_test_index_fm_rank_dictionary 79/143 Test #81: test_test_index_drawing ....................................... Passed 0.01 sec Start 83: test_test_index_fm_sparse_string 80/143 Test #83: test_test_index_fm_sparse_string .............................. Passed 0.00 sec Start 84: test_test_index_base 81/143 Test #79: test_test_index_sa_bwtwalk .................................... Passed 0.06 sec Start 85: test_test_index_fm 82/143 Test #82: test_test_index_fm_rank_dictionary ............................ Passed 1.08 sec Start 86: test_test_index_bifm 83/143 Test #84: test_test_index_base .......................................... Passed 2.77 sec Start 87: test_test_index_vstree 84/143 Test #85: test_test_index_fm ............................................ Passed 5.09 sec Start 88: test_test_index_stree_iterators 85/143 Test #88: test_test_index_stree_iterators ............................... Passed 0.02 sec Start 89: test_test_index_view 86/143 Test #89: test_test_index_view .......................................... Passed 0.01 sec Start 90: test_test_index_finder 87/143 Test #87: test_test_index_vstree ........................................ Passed 2.39 sec Start 91: test_test_find_backtracking 88/143 Test #91: test_test_find_backtracking ................................... Passed 0.00 sec Start 92: test_test_index_repeats 89/143 Test #92: test_test_index_repeats ....................................... Passed 0.03 sec Start 93: test_test_journaled_set 90/143 Test #93: test_test_journaled_set ....................................... Passed 0.01 sec Start 94: test_test_journaled_string_tree 91/143 Test #94: test_test_journaled_string_tree ............................... Passed 0.01 sec Start 95: test_test_delta_map 92/143 Test #95: test_test_delta_map ........................................... Passed 0.01 sec Start 96: test_journaled_string_tree_traverser 93/143 Test #96: test_journaled_string_tree_traverser .......................... Passed 0.09 sec Start 97: test_journaled_string_tree_find 94/143 Test #90: test_test_index_finder ........................................ Passed 1.26 sec Start 98: test_test_map 95/143 Test #98: test_test_map ................................................. Passed 2.56 sec Start 99: test_test_misc 96/143 Test #99: test_test_misc ................................................ Passed 0.01 sec Start 100: test_test_modifier 97/143 Test #100: test_test_modifier ............................................ Passed 0.09 sec Start 101: test_test_modifier_cyclic_shape 98/143 Test #101: test_test_modifier_cyclic_shape ............................... Passed 0.02 sec Start 102: test_test_multiple_translation_units 99/143 Test #102: test_test_multiple_translation_units .......................... Passed 0.00 sec Start 103: test_test_parallel 100/143 Test #45: test_test_bam_io .............................................. Passed 11.35 sec Start 104: test_test_parse_lm 101/143 Test #104: test_test_parse_lm ............................................ Passed 0.01 sec Start 105: test_test_pipe 102/143 Test #105: test_test_pipe ................................................ Passed 1.09 sec Start 106: test_test_platform 103/143 Test #106: test_test_platform ............................................ Passed 0.01 sec Start 107: test_test_random 104/143 Test #107: test_test_random .............................................. Passed 0.03 sec Start 108: test_test_realign 105/143 Test #108: test_test_realign ............................................. Passed 0.25 sec Start 109: test_reduced_aminoacid 106/143 Test #109: test_reduced_aminoacid ........................................ Passed 0.02 sec Start 110: test_test_rna_io 107/143 Test #110: test_test_rna_io .............................................. Passed 0.02 sec Start 111: test_test_roi_io 108/143 Test #111: test_test_roi_io .............................................. Passed 0.02 sec Start 112: test_test_score 109/143 Test #112: test_test_score ............................................... Passed 0.02 sec Start 113: test_test_seeds_combination 110/143 Test #113: test_test_seeds_combination ................................... Passed 0.01 sec Start 114: test_test_seeds_extension 111/143 Test #114: test_test_seeds_extension ..................................... Passed 0.01 sec Start 115: test_test_seeds_global_chaining 112/143 Test #115: test_test_seeds_global_chaining ............................... Passed 0.02 sec Start 116: test_test_seeds_seed_base 113/143 Test #116: test_test_seeds_seed_base ..................................... Passed 0.01 sec Start 117: test_test_seeds_seed_chained 114/143 Test #117: test_test_seeds_seed_chained .................................. Passed 0.01 sec Start 118: test_test_seeds_seed_diagonal 115/143 Test #118: test_test_seeds_seed_diagonal ................................. Passed 0.01 sec Start 119: test_test_seeds_seed_set_base 116/143 Test #119: test_test_seeds_seed_set_base ................................. Passed 0.01 sec Start 120: test_test_seeds_seed_set_unordered 117/143 Test #120: test_test_seeds_seed_set_unordered ............................ Passed 0.01 sec Start 121: test_test_seeds_align_banded_chain_impl 118/143 Test #121: test_test_seeds_align_banded_chain_impl ....................... Passed 0.07 sec Start 122: test_test_seeds_banded_chain_alignment_interface 119/143 Test #122: test_test_seeds_banded_chain_alignment_interface .............. Passed 0.04 sec Start 123: test_test_seq_io 120/143 Test #97: test_journaled_string_tree_find ............................... Passed 6.94 sec Start 124: test_test_sequence 121/143 Test #124: test_test_sequence ............................................ Passed 0.01 sec Start 125: test_test_sequence_v2 122/143 Test #123: test_test_seq_io .............................................. Passed 0.12 sec Start 126: test_test_stringset_v2 123/143 Test #126: test_test_stringset_v2 ........................................ Passed 0.02 sec Start 127: test_test_sequence_journaled 124/143 Test #127: test_test_sequence_journaled .................................. Passed 0.01 sec Start 128: test_test_simd_vector 125/143 Test #128: test_test_simd_vector ......................................... Passed 0.00 sec Start 129: test_test_simd_vector_sse4_host 126/143 Test #129: test_test_simd_vector_sse4_host ............................... Passed 0.01 sec Start 130: test_test_simd_vector_avx2_host 127/143 Test #130: test_test_simd_vector_avx2_host ............................... Passed 0.01 sec Start 131: test_test_simd_vector_avx512_knl_host 128/143 Test #131: test_test_simd_vector_avx512_knl_host ......................... Passed 0.01 sec Start 132: test_test_simd_vector_avx512_skx_host 129/143 Test #132: test_test_simd_vector_avx512_skx_host ......................... Passed 0.01 sec Start 133: test_test_simd_vector_avx512_cnl_host 130/143 Test #133: test_test_simd_vector_avx512_cnl_host .........................***Exception: Illegal 0.02 sec TEST SUITE test_simd_vector SEQAN_ENABLE_DEBUG == 1 SEQAN_ENABLE_TESTING == 1 SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" SEQAN_ASYNC_IO == 1 Start 134: test_test_simple_intervals_io 131/143 Test #134: test_test_simple_intervals_io ................................. Passed 0.00 sec Start 135: test_test_statistics 132/143 Test #135: test_test_statistics .......................................... Passed 0.02 sec Start 136: test_test_store 133/143 Test #125: test_test_sequence_v2 ......................................... Passed 0.24 sec Start 137: test_test_stream 134/143 Test #103: test_test_parallel ............................................ Passed 3.53 sec Start 138: test_test_find_swift 135/143 Test #138: test_test_find_swift .......................................... Passed 0.00 sec Start 139: test_test_tabix_io 136/143 Test #139: test_test_tabix_io ............................................ Passed 0.03 sec Start 140: test_translation 137/143 Test #140: test_translation .............................................. Passed 0.02 sec Start 141: test_ucsc_io 138/143 Test #141: test_ucsc_io .................................................. Passed 0.01 sec Start 142: test_test_vcf_io 139/143 Test #142: test_test_vcf_io .............................................. Passed 0.01 sec Start 143: test_test_funcs_param_chooser 140/143 Test #143: test_test_funcs_param_chooser ................................. Passed 0.00 sec 141/143 Test #136: test_test_store ............................................... Passed 0.39 sec 142/143 Test #137: test_test_stream .............................................. Passed 1.06 sec 143/143 Test #86: test_test_index_bifm .......................................... Passed 16.85 sec 99% tests passed, 1 tests failed out of 143 Total Test time (real) = 20.32 sec The following tests FAILED: 133 - test_test_simd_vector_avx512_cnl_host (ILLEGAL) Errors while running CTest make[1]: *** [Makefile:121: test] Error 8 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 returned exit code 2 make: *** [debian/rules:43: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-05-03T03:45:42Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 12742580 Build-Time: 5092 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 55 Job: seqan2_2.4.0+dfsg-12 Machine Architecture: amd64 Package: seqan2 Package-Time: 5166 Source-Version: 2.4.0+dfsg-12 Space: 12742580 Status: attempted Version: 2.4.0+dfsg-12 -------------------------------------------------------------------------------- Finished at 2020-05-03T03:45:42Z Build needed 01:26:06, 12742580k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 5167.819243486s DC-Time-Estimation: 5167.819243486 versus expected 11616 (r/m: 1.2477566363494401 ; m: 5167.819243486)