DC-Build-Header: jellyfish 2.3.0-6 / 2020-10-29 19:24:16 +0000 DC-Task: type:rebuild-binarch-only source:jellyfish version:2.3.0-6 chroot:unstable esttime:321 logfile:/tmp/jellyfish_2.3.0-6_unstable_clang11.log modes:clang11:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang11 jellyfish_2.3.0-6' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-5-127.eu-central-1.compute.internal +==============================================================================+ | jellyfish 2.3.0-6 (amd64) Thu, 29 Oct 2020 19:24:16 +0000 | +==============================================================================+ Package: jellyfish Version: 2.3.0-6 Source Version: 2.3.0-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-90f7cc30-ee2b-4873-85ae-be082500574d' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang11 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=10 + echo 'Install of clang-10' Install of clang-10 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [146 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [734 B] Ign:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [734 B] Ign:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index Get:4 http://127.0.0.1:12990/debian sid/main Translation-en [6391 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources [8989 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 Packages [8492 kB] Fetched 24.0 MB in 3s (6994 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-10 libomp-10-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc4 libomp5-10 libz3-4 Suggested packages: clang-10-doc libomp-10-doc Recommended packages: llvm-10-dev python3 The following NEW packages will be installed: clang-10 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc-9-dev libobjc4 libomp-10-dev libomp5-10 libz3-4 0 upgraded, 19 newly installed, 0 to remove and 1 not upgraded. Need to get 52.3 MB of archives. After this operation, 274 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libllvm10 amd64 1:10.0.1-7 [16.6 MB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp10 amd64 1:10.0.1-7 [9069 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-2.1 [239 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10.2.0-15 [41.6 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libobjc-10-dev amd64 10.2.0-15 [170 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.31-4 [2815 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10.2.0-15 [49.4 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10.2.0-15 [511 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-10-dev amd64 1:10.0.1-7 [5062 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libclang1-10 amd64 1:10.0.1-7 [7293 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 clang-10 amd64 1:10.0.1-7 [106 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.3.0-18 [390 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.3.0-18 [2347 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.3.0-18 [220 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libomp5-10 amd64 1:10.0.1-7 [339 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libomp-10-dev amd64 1:10.0.1-7 [86.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.3 MB in 0s (141 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12312 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20191231-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../02-libz3-4_4.8.9-1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.9-1) ... Selecting previously unselected package libllvm10:amd64. Preparing to unpack .../03-libllvm10_1%3a10.0.1-7_amd64.deb ... Unpacking libllvm10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libclang-cpp10. Preparing to unpack .../04-libclang-cpp10_1%3a10.0.1-7_amd64.deb ... Unpacking libclang-cpp10 (1:10.0.1-7) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../05-libgc1_1%3a8.0.4-2.1_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-2.1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../06-libobjc4_10.2.0-15_amd64.deb ... Unpacking libobjc4:amd64 (10.2.0-15) ... Selecting previously unselected package libobjc-10-dev:amd64. Preparing to unpack .../07-libobjc-10-dev_10.2.0-15_amd64.deb ... Unpacking libobjc-10-dev:amd64 (10.2.0-15) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../08-libc6-i386_2.31-4_amd64.deb ... Unpacking libc6-i386 (2.31-4) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../09-lib32gcc-s1_10.2.0-15_amd64.deb ... Unpacking lib32gcc-s1 (10.2.0-15) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../10-lib32stdc++6_10.2.0-15_amd64.deb ... Unpacking lib32stdc++6 (10.2.0-15) ... Selecting previously unselected package libclang-common-10-dev. Preparing to unpack .../11-libclang-common-10-dev_1%3a10.0.1-7_amd64.deb ... Unpacking libclang-common-10-dev (1:10.0.1-7) ... Selecting previously unselected package libclang1-10. Preparing to unpack .../12-libclang1-10_1%3a10.0.1-7_amd64.deb ... Unpacking libclang1-10 (1:10.0.1-7) ... Selecting previously unselected package clang-10. Preparing to unpack .../13-clang-10_1%3a10.0.1-7_amd64.deb ... Unpacking clang-10 (1:10.0.1-7) ... Selecting previously unselected package libasan5:amd64. Preparing to unpack .../14-libasan5_9.3.0-18_amd64.deb ... Unpacking libasan5:amd64 (9.3.0-18) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../15-libgcc-9-dev_9.3.0-18_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../16-libobjc-9-dev_9.3.0-18_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libomp5-10:amd64. Preparing to unpack .../17-libomp5-10_1%3a10.0.1-7_amd64.deb ... Unpacking libomp5-10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libomp-10-dev. Preparing to unpack .../18-libomp-10-dev_1%3a10.0.1-7_amd64.deb ... Unpacking libomp-10-dev (1:10.0.1-7) ... Setting up libasan5:amd64 (9.3.0-18) ... Setting up libz3-4:amd64 (4.8.9-1) ... Setting up libgc1:amd64 (1:8.0.4-2.1) ... Setting up libomp5-10:amd64 (1:10.0.1-7) ... Setting up libc6-i386 (2.31-4) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libomp-10-dev (1:10.0.1-7) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libobjc4:amd64 (10.2.0-15) ... Setting up libllvm10:amd64 (1:10.0.1-7) ... Setting up libgcc-9-dev:amd64 (9.3.0-18) ... Setting up lib32gcc-s1 (10.2.0-15) ... Setting up lib32stdc++6 (10.2.0-15) ... Setting up libclang1-10 (1:10.0.1-7) ... Setting up libobjc-9-dev:amd64 (9.3.0-18) ... Setting up libobjc-10-dev:amd64 (10.2.0-15) ... Setting up libclang-common-10-dev (1:10.0.1-7) ... Setting up libclang-cpp10 (1:10.0.1-7) ... Setting up clang-10 (1:10.0.1-7) ... Processing triggers for libc-bin (2.31-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-10 g++-4.6 + ln -s clang-10 gcc-4.6 + ln -s clang-10 cpp-4.6 + ln -s clang-10 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-10 g++-4.7 + ln -s clang-10 gcc-4.7 + ln -s clang-10 cpp-4.7 + ln -s clang-10 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-10 g++-4.8 + ln -s clang-10 gcc-4.8 + ln -s clang-10 cpp-4.8 + ln -s clang-10 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-10 g++-4.9 + ln -s clang-10 gcc-4.9 + ln -s clang-10 cpp-4.9 + ln -s clang-10 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-10 g++-5 + ln -s clang-10 gcc-5 + ln -s clang-10 cpp-5 + ln -s clang-10 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-10 g++-6 + ln -s clang-10 gcc-6 + ln -s clang-10 cpp-6 + ln -s clang-10 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-10 g++-7 + ln -s clang-10 gcc-7 + ln -s clang-10 cpp-7 + ln -s clang-10 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-10 g++-8 + ln -s clang-10 gcc-8 + ln -s clang-10 cpp-8 + ln -s clang-10 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-10 g++-9 + ln -s clang-10 gcc-9 + ln -s clang-10 cpp-9 + ln -s clang-10 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-10 g++-10 + ln -s clang-10 gcc-10 + ln -s clang-10 cpp-10 + ln -s clang-10 gcc + echo 'gcc-10 hold' + dpkg --set-selections + echo 'g++-10 hold' + dpkg --set-selections + cd - /build/jellyfish-TwlQlq + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-10 clang++ + ln -s clang-10 clang + clang++ --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/jellyfish-TwlQlq + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 1 not upgraded. Need to get 1304 kB of archives. After this operation, 4865 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.14.2+dfsg-6 [1035 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.14.2+dfsg-6 [242 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1304 kB in 0s (54.4 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13315 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake-bin (5.14.2+dfsg-6) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake:amd64 (5.14.2+dfsg-6) ... Setting up qt5-qmake-bin (5.14.2+dfsg-6) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.14.2+dfsg-6) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 29 19:24 . drwxr-xr-x 76 root root 4096 Oct 29 19:24 .. -rw-r--r-- 1 root root 276 Oct 29 19:24 qmake.conf -rw-r--r-- 1 root root 3218 Oct 29 19:24 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang11'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/jellyfish-TwlQlq/resolver-OWiwNc' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libdebconfclient0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 49.6 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libdebconfclient0 amd64 0.255 [49.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.6 kB in 0s (3444 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14056 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.255_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.255) over (0.254) ... Setting up libdebconfclient0:amd64 (0.255) ... Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'jellyfish' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/jellyfish.git Please use: git clone https://salsa.debian.org/med-team/jellyfish.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 695 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main jellyfish 2.3.0-6 (dsc) [2550 B] Get:2 http://127.0.0.1:12990/debian sid/main jellyfish 2.3.0-6 (tar) [679 kB] Get:3 http://127.0.0.1:12990/debian sid/main jellyfish 2.3.0-6 (diff) [13.2 kB] Fetched 695 kB in 0s (7665 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/jellyfish-TwlQlq/jellyfish-2.3.0' with '<>' I: NOTICE: Log filtering will replace 'build/jellyfish-TwlQlq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-python, perl, chrpath, libhts-dev, dos2unix, samtools, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-python, perl, chrpath, libhts-dev, dos2unix, samtools, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [445 B] Get:5 copy:/<>/apt_archive ./ Packages [529 B] Fetched 1931 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc bsdextrautils ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts3 libicu67 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libncurses6 libncursesw6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db mime-support openssl pkg-config po-debconf procps python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dev python3.8-minimal python3.9 python3.9-dev python3.9-minimal rake readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sensible-utils swig swig4.0 time yaggo zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support python3.9-venv python3.9-doc readline-doc ri ruby-dev bundler cwltool swig-doc swig-examples swig4.0-examples swig4.0-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc zip fonts-lato libjs-jquery The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc bsdextrautils ca-certificates chrpath d-shlibs debhelper dh-autoreconf dh-python dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts3 libicu67 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libncurses6 libncursesw6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libruby2.7 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db mime-support openssl pkg-config po-debconf procps python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dev python3.8-minimal python3.9 python3.9-dev python3.9-minimal rake readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sbuild-build-depends-main-dummy sensible-utils swig swig4.0 time yaggo zlib1g-dev 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 59.7 MB of archives. After this operation, 214 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libpython3.8-minimal amd64 3.8.6-1 [761 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 python3.8-minimal amd64 3.8.6-1 [1863 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 python3-minimal amd64 3.8.6-1 [37.7 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 mime-support all 3.64 [37.8 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libncursesw6 amd64 6.2+20200918-1 [132 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 readline-common all 8.0-4 [72.5 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1720 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 python3.8 amd64 3.8.6-1 [422 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libpython3-stdlib amd64 3.8.6-1 [20.9 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 python3 amd64 3.8.6-1 [64.0 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-minimal amd64 3.9.0-5 [797 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 python3.9-minimal amd64 3.9.0-5 [1957 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libncurses6 amd64 6.2+20200918-1 [102 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libprocps8 amd64 2:3.3.16-5 [62.7 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 procps amd64 2:3.3.16-5 [262 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.2-4 [801 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 bc amd64 1.07.1-2+b2 [109 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 openssl amd64 1.1.1h-1 [848 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 ca-certificates all 20200601 [158 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 d-shlibs all 0.95 [17.8 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-14 [513 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.66.1-2 [1362 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-6.1 [692 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13.2.1 [1007 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 python3-lib2to3 all 3.8.6-1 [78.4 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 python3-distutils all 3.8.6-1 [145 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 dh-python all 4.20200925 [98.3 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 dos2unix amd64 7.4.1-1 [392 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b1 [282 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 libldap-2.4-2 amd64 2.4.54+dfsg-1 [231 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 libnghttp2-14 amd64 1.41.0-3 [74.0 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 libpsl5 amd64 0.21.0-1.1 [55.3 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 libcurl3-gnutls amd64 7.72.0-1 [333 kB] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libcurl4-gnutls-dev amd64 7.72.0-1 [422 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 libdeflate0 amd64 1.6-1 [55.1 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 libdeflate-dev amd64 1.6-1 [46.5 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 libexpat1-dev amd64 2.2.10-1 [140 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 libhts3 amd64 1.11-2 [373 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 liblzma-dev amd64 5.2.4-1+b1 [211 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 libhts-dev amd64 1.11-2 [3859 kB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 libpython3.8 amd64 3.8.6-1 [1608 kB] Get:80 http://127.0.0.1:12990/debian sid/main amd64 libpython3.8-dev amd64 3.8.6-1 [3840 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 libpython3-dev amd64 3.8.6-1 [21.1 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-stdlib amd64 3.9.0-5 [1750 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9 amd64 3.9.0-5 [1688 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-dev amd64 3.9.0-5 [4033 kB] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libpython3-all-dev amd64 3.8.6-1 [1072 B] Get:86 http://127.0.0.1:12990/debian sid/main amd64 rubygems-integration all 1.17.2 [6384 B] Get:87 http://127.0.0.1:12990/debian sid/main amd64 ruby2.7 amd64 2.7.2-2 [683 kB] Get:88 http://127.0.0.1:12990/debian sid/main amd64 ruby-rubygems all 3.2.0~rc.1-1 [274 kB] Get:89 http://127.0.0.1:12990/debian sid/main amd64 ruby amd64 1:2.7+2 [11.7 kB] Get:90 http://127.0.0.1:12990/debian sid/main amd64 rake all 13.0.1-4 [84.7 kB] Get:91 http://127.0.0.1:12990/debian sid/main amd64 ruby-minitest all 5.13.0-1 [57.3 kB] Get:92 http://127.0.0.1:12990/debian sid/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:93 http://127.0.0.1:12990/debian sid/main amd64 ruby-power-assert all 1.1.7-1 [11.4 kB] Get:94 http://127.0.0.1:12990/debian sid/main amd64 ruby-test-unit all 3.3.5-1 [85.3 kB] Get:95 http://127.0.0.1:12990/debian sid/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:96 http://127.0.0.1:12990/debian sid/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:97 http://127.0.0.1:12990/debian sid/main amd64 libruby2.7 amd64 2.7.2-2 [4133 kB] Get:98 http://127.0.0.1:12990/debian sid/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:99 http://127.0.0.1:12990/debian sid/main amd64 python3.9 amd64 3.9.0-5 [455 kB] Get:100 http://127.0.0.1:12990/debian sid/main amd64 python3-all amd64 3.8.6-1 [1060 B] Get:101 http://127.0.0.1:12990/debian sid/main amd64 python3.8-dev amd64 3.8.6-1 [515 kB] Get:102 http://127.0.0.1:12990/debian sid/main amd64 python3-dev amd64 3.8.6-1 [1164 B] Get:103 http://127.0.0.1:12990/debian sid/main amd64 python3.9-dev amd64 3.9.0-5 [512 kB] Get:104 http://127.0.0.1:12990/debian sid/main amd64 python3-all-dev amd64 3.8.6-1 [1076 B] Get:105 http://127.0.0.1:12990/debian sid/main amd64 samtools amd64 1.11-1 [545 kB] Get:106 http://127.0.0.1:12990/debian sid/main amd64 swig4.0 amd64 4.0.1-5 [1402 kB] Get:107 http://127.0.0.1:12990/debian sid/main amd64 swig all 4.0.1-5 [329 kB] Get:108 http://127.0.0.1:12990/debian sid/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get:109 http://127.0.0.1:12990/debian sid/main amd64 yaggo all 1.5.10-2 [18.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.7 MB in 0s (133 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14056 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libpython3.8-minimal:amd64. Preparing to unpack .../5-libpython3.8-minimal_3.8.6-1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.6-1) ... 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Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up dos2unix (7.4.1-1) ... Setting up python3.9-minimal (3.9.0-5) ... Setting up swig4.0 (4.0.1-5) ... Setting up openssl (1.1.1h-1) ... Setting up libdeflate-dev:amd64 (1.6-1) ... Setting up libelf1:amd64 (0.181-1) ... Setting up readline-common (8.0-4) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.1) ... Setting up chrpath (0.16-2+b1) ... Setting up libprocps8:amd64 (2:3.3.16-5) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up swig (4.0.1-5) ... Setting up libtool (2.4.6-14) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up bc (1.07.1-2+b2) ... Setting up libldap-2.4-2:amd64 (2.4.54+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libcurl3-gnutls:amd64 (7.72.0-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.72.0-1) ... Setting up ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 126 added, 0 removed; done. Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up procps (2:3.3.16-5) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libpython3.8-stdlib:amd64 (3.8.6-1) ... Setting up python3.8 (3.8.6-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.0-5) ... Setting up libpython3-stdlib:amd64 (3.8.6-1) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:amd64 (1.11-2) ... Setting up gettext (0.19.8.1-10) ... Setting up libhts-dev:amd64 (1.11-2) ... Setting up python3 (3.8.6-1) ... Setting up rubygems-integration (1.17.2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up samtools (1.11-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.9:amd64 (3.9.0-5) ... Setting up libpython3.8:amd64 (3.8.6-1) ... Setting up python3-lib2to3 (3.8.6-1) ... Setting up python3.9 (3.9.0-5) ... Setting up python3-distutils (3.8.6-1) ... Setting up dh-python (4.20200925) ... Setting up po-debconf (1.0.21) ... Setting up libpython3.9-dev:amd64 (3.9.0-5) ... Setting up python3-all (3.8.6-1) ... Setting up libpython3.8-dev:amd64 (3.8.6-1) ... Setting up python3.8-dev (3.8.6-1) ... Setting up python3.9-dev (3.9.0-5) ... Setting up libpython3-dev:amd64 (3.8.6-1) ... Setting up libpython3-all-dev:amd64 (3.8.6-1) ... Setting up python3-dev (3.8.6-1) ... Setting up python3-all-dev (3.8.6-1) ... Setting up dh-autoreconf (19) ... Setting up rake (13.0.1-4) ... Setting up debhelper (13.2.1) ... Setting up libruby2.7:amd64 (2.7.2-2) ... Setting up ruby2.7 (2.7.2-2) ... Setting up ruby (1:2.7+2) ... Setting up yaggo (1.5.10-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up ruby-rubygems (3.2.0~rc.1-1) ... Processing triggers for libc-bin (2.31-4) ... Processing triggers for ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2 dpkg-dev_1.20.5 g++-10_10.2.0-15 gcc-10_10.2.0-15 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-15 libstdc++6_10.2.0-15 linux-libc-dev_5.9.1-1 Package versions: adduser_3.118 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc1-2 bc_1.07.1-2+b2 binutils_2.35.1-2 binutils-common_2.35.1-2 binutils-x86-64-linux-gnu_2.35.1-2 bsdextrautils_2.36-3+b1 bsdutils_1:2.36-3+b1 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 chrpath_0.16-2+b1 clang-10_1:10.0.1-7 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-15 d-shlibs_0.95 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20200925 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dos2unix_7.4.1-1 dpkg_1.20.5 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.0-15 gcc_4:10.2.0-1 gcc-10_10.2.0-15 gcc-10-base_10.2.0-15 gcc-9-base_9.3.0-18 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10.2.0-15 lib32stdc++6_10.2.0-15 libacl1_2.2.53-8 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan5_9.3.0-18 libasan6_10.2.0-15 libatomic1_10.2.0-15 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2 libblkid1_2.36-3+b1 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4 libc-dev-bin_2.31-4 libc6_2.31-4 libc6-dev_2.31-4 libc6-i386_2.31-4 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-15 libclang-common-10-dev_1:10.0.1-7 libclang-cpp10_1:10.0.1-7 libclang1-10_1:10.0.1-7 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2 libctf0_2.35.1-2 libcurl3-gnutls_7.72.0-1 libcurl4-gnutls-dev_7.72.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdeflate-dev_1.6-1 libdeflate0_1.6-1 libdpkg-perl_1.20.5 libedit2_3.1-20191231-1 libelf1_0.181-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgc1_1:8.0.4-2.1 libgcc-10-dev_10.2.0-15 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-15 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-15 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libhts-dev_1.11-2 libhts3_1.11-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libitm1_10.2.0-15 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libldap-2.4-2_2.4.54+dfsg-1 libllvm10_1:10.0.1-7 liblsan0_10.2.0-15 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3+b1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libobjc-10-dev_10.2.0-15 libobjc-9-dev_9.3.0-18 libobjc4_10.2.0-15 libomp-10-dev_1:10.0.1-7 libomp5-10_1:10.0.1-7 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libpython3-all-dev_3.8.6-1 libpython3-dev_3.8.6-1 libpython3-stdlib_3.8.6-1 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libpython3.9_3.9.0-5 libpython3.9-dev_3.9.0-5 libpython3.9-minimal_3.9.0-5 libpython3.9-stdlib_3.9.0-5 libquadmath0_10.2.0-15 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libruby2.7_2.7.2-2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.4-1+b1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3+b1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-15 libstdc++6_10.2.0-15 libsub-override-perl_0.09-2 libsystemd0_246.6-2 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-15 libubsan1_10.2.0-15 libuchardet0_0.0.7-1 libudev1_246.6-2 libunistring2_0.9.10-4 libuuid1_2.36-3+b1 libxml2_2.9.10+dfsg-6.1 libyaml-0-2_0.2.2-1 libz3-4_4.8.9-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.9.1-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-3+b1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pkg-config_0.29.2-1 po-debconf_1.0.21 procps_2:3.3.16-5 python3_3.8.6-1 python3-all_3.8.6-1 python3-all-dev_3.8.6-1 python3-dev_3.8.6-1 python3-distutils_3.8.6-1 python3-lib2to3_3.8.6-1 python3-minimal_3.8.6-1 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 python3.9_3.9.0-5 python3.9-dev_3.9.0-5 python3.9-minimal_3.9.0-5 qt5-qmake_5.14.2+dfsg-6 qt5-qmake-bin_5.14.2+dfsg-6 qtchooser_66-2 rake_13.0.1-4 readline-common_8.0-4 ruby_1:2.7+2 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.7-1 ruby-rubygems_3.2.0~rc.1-1 ruby-test-unit_3.3.5-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.2-2 rubygems-integration_1.17.2 samtools_1.11-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5 swig4.0_4.0.1-5 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 time_1.7-25.1+b1 tzdata_2020d-1 util-linux_2.36-3+b1 xz-utils_5.2.4-1+b1 yaggo_1.5.10-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: jellyfish Binary: jellyfish, libjellyfish-2.0-2, libjellyfish-2.0-dev, python3-dna-jellyfish, libjellyfish-perl, jellyfish-examples Architecture: any all Version: 2.3.0-6 Maintainer: Debian Med Packaging Team Uploaders: Shaun Jackman , Andreas Tille , Michael R. Crusoe Homepage: https://www.cbcb.umd.edu/software/jellyfish/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/jellyfish Vcs-Git: https://salsa.debian.org/med-team/jellyfish.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 12), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, dh-python, perl, chrpath, libhts-dev, dos2unix, samtools Package-List: jellyfish deb science optional arch=any jellyfish-examples deb science optional arch=all libjellyfish-2.0-2 deb libs optional arch=any libjellyfish-2.0-dev deb libdevel optional arch=any libjellyfish-perl deb perl optional arch=any python3-dna-jellyfish deb python optional arch=any Checksums-Sha1: 4f7f5263e6e097c623531a660ef6158e2fb5e17b 679125 jellyfish_2.3.0.orig.tar.gz dfdf6cb9208784f49dd43f234800926f24bcfa3f 13176 jellyfish_2.3.0-6.debian.tar.xz Checksums-Sha256: 29ead991de90151dbe4a2717f7ac30b3852296c9cbdda8b001121a1f2fa714db 679125 jellyfish_2.3.0.orig.tar.gz 15261c8b51dfec511bc45ed715b64979d4f40a8273937c2e14d2c128dbfb0262 13176 jellyfish_2.3.0-6.debian.tar.xz Files: b447a26df0f1e11526129907a9b0acdb 679125 jellyfish_2.3.0.orig.tar.gz 50d9c4f5d2907b9d24517b1014a0310a 13176 jellyfish_2.3.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl7ZBPwACgkQPCZ2P2xn 5uKfcw//X98pBDc0awDxNEPRsRLiwhUn5IrWFUv8QesEwOJov2qPeniLyKnZzl87 QlqY/2vZ1kBiDFP1ogJuPzCSNhtklnwqCXHNSqCJ52owbcReB+AaRqjkGTosGp8p zAduNuKHw/7InRlpUZrwcDZRENp640KEd8S3+himSG+wgLZigoTxKQ7lAWk8pirJ hs0s+fA8FNi+DzQEKmXV4ofeptmdSvM6rRh07zhmeU3eJqynXKJNcyKzxeaN8Cp7 QYyPB04igI6UeIO1x8OwcVo/uKG9Kjgjx8rv+Hd8H8sNPAGqS4LPmtedFq1MMQNz JgvoK/jQ9k823Cquu1EK1ys+S56ZCmsFVtBBok8f9NGfE/eWr8ygvrc1imvsxby8 VW+N5vmggk7KkKLUWljZ5SG5e5KUJghyjOjcVgp5q0PlZjThiyTPXYOlaGOMY1IY YSRicqQfXEFpJlb7B1QThdQFktYs9YBE3AOvUGl95KYDJCVvP3Emm7YULuvcbsgA 4N0ZfNnH4Lm+gGmk6Qy/6u7KO2rniY4UW836fAyz1fSNqi/5Ph4a6QjqKzS0EaX1 4IQ0FptWAGyNsYWRx3cTjLQFX94x+/QXS87EADRRaUSi5U9adRe77a7FxRzN869G EX5WgXAhfH/IISBSh7uLt3XTtTm15BJ8VXipZQm/rNNM5KRD2x8= =CQf/ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.lQw8mUsu/trustedkeys.kbx': General error gpgv: Signature made Thu Jun 4 14:28:12 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./jellyfish_2.3.0-6.dsc dpkg-source: info: extracting jellyfish in /<> dpkg-source: info: unpacking jellyfish_2.3.0.orig.tar.gz dpkg-source: info: unpacking jellyfish_2.3.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying manpage_whatis_entry.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying portability.patch dpkg-source: info: applying fix_replacement_of_-L_option.patch dpkg-source: info: applying test_needs_bash dpkg-source: info: applying python3 Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-90f7cc30-ee2b-4873-85ae-be082500574d SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package jellyfish dpkg-buildpackage: info: source version 2.3.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean if [ -d debian/tmp_save_tests ] ; then \ mv debian/tmp_save_tests/* tests ; \ rmdir debian/tmp_save_tests ; \ fi rm -f tests/compat.sh rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py rm -f swig/perl5/blib/arch/auto/jellyfish/jellyfish.so rm -f swig/perl5/blib/bin/.exists rm -f swig/perl5/blib/lib/.exists rm -f swig/perl5/blib/lib/auto/jellyfish/.exists rm -f swig/perl5/blib/man1/.exists rm -f swig/perl5/blib/man3/.exists rm -f swig/perl5/blib/script/.exists rm -f swig/perl5/jellyfish.bs rm -f swig/perl5/pm_to_blib rm -rf swig/perl5/MYMETA.json swig/perl5/MYMETA.yml swig/perl5/Makefile swig/perl5/blib/ make[1]: Leaving directory '/<>' debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:8: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:4: installing './install-sh' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... 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(cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for htslib... yes checking for samtools... /usr/bin/samtools checking for unix2dos... /usr/bin/unix2dos checking for md5sum... md5sum checking for yaggo... /usr/bin/yaggo checking for x86 cpuid output... unknown checking for x86-AVX xgetbv output... unknown checking for x86 cpuid 0x00000000 output... d:756e6547:6c65746e:49656e69 checking for x86 cpuid 0x80000000 output... 80000008:0:0:0 checking for x86 cpuid 0x00000001 output... 50654:3040800:fffa3203:1f8bfbff checking for x86 cpuid 0x00000007 output... 0:d19f4fbb:18:0 checking for x86 cpuid 0x80000001 output... 0:0:121:2c100800 checking for x86-AVX xgetbv 0x00000000 output... 2ff:0 checking whether RDRND is supported by the processor... yes checking whether RDRND is supported by the processor and OS... yes checking whether C++ compiler accepts -mrdrnd... yes checking whether BMI1 is supported by the processor... yes checking whether 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checking whether C++ compiler accepts -msse4.1... yes checking whether SSE4.2 is supported by the processor... yes checking whether SSE4.2 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse4.2... yes checking whether SSE4a is supported by the processor... no checking whether SHA is supported by the processor... no checking whether AES is supported by the processor... yes checking whether AES is supported by the processor and OS... yes checking whether C++ compiler accepts -maes... yes checking whether AVX is supported by the processor... yes checking whether AVX is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx... yes checking whether FMA3 is supported by the processor... yes checking whether FMA3 is supported by the processor and OS... yes checking whether C++ compiler accepts -mfma... yes checking whether FMA4 is supported by the processor... no checking whether XOP is supported by the processor... no checking whether AVX2 is supported by the processor... yes checking whether AVX2 is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx2... yes checking whether AVX512-F is supported by the processor... yes checking whether AVX512-F is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx512f... yes checking whether AVX512-CD is supported by the processor... yes checking whether AVX512-CD is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx512cd... yes checking whether AVX512-PF is supported by the processor... no checking whether AVX512-ER is supported by the processor... no checking whether AVX512-VL is supported by the processor... yes checking whether AVX512-VL is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx512vl... yes checking whether AVX512-BW is supported by the processor... yes checking whether AVX512-BW is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx512bw... yes checking whether AVX512-DQ is supported by the processor... yes checking whether AVX512-DQ is supported by the processor and OS... yes checking whether C++ compiler accepts -mavx512dq... yes checking whether AVX512-IFMA is supported by the processor... no checking whether AVX512-VBMI is supported by the processor... no checking for __int128... yes checking for std::numeric_limits<__int128>... no checking for _NSGetExecutablePath... no checking for execinfo.h... yes checking for ext/stdio_filebuf.h... yes checking for sys/syscall.h... yes checking for siginfo_t.si_int... yes checking for swig... /usr/bin/swig checking SWIG version... 4.0.1 checking for SWIG library... /usr/share/swig4.0 checking for python... /usr/bin/python3 checking for a version of Python >= '2.1.0'... yes checking for the distutils Python package... yes checking for Python include path... -I/usr/include/python3.8 checking for Python library path... -L/usr/lib -lpython3.8 checking for Python site-packages path... /usr/lib/python3/dist-packages checking python extra libraries... -lcrypt -lpthread -ldl -lutil -lm -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes checking for perl... /usr/bin/perl checking for Perl prefix... /usr checking for Perl extension include path... /usr/lib/x86_64-linux-gnu/perl/5.30/CORE checking for Perl extension target directory... /usr/lib/perl/5.30.0 checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong checking for posix_memalign... yes checking for aligned_alloc... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating compat.sh config.status: creating jellyfish-2.0.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_configure --sourcedirectory=swig/perl5 cd swig/perl5 && perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lpthread" -I/<>/debian/tmp//usr/include/jellyfish-2.3.0 -L/<>/debian/tmp//usr/lib/x86_64-linux-gnu -ljellyfish-2.0 -lpthread -L/<>/debian/tmp//usr/lib/x86_64-linux-gnu Warning (mostly harmless): No library found for -ljellyfish-2.0 Generating a Unix-style Makefile Writing Makefile for jellyfish Writing MYMETA.yml and MYMETA.json dh_auto_configure --sourcedirectory=swig/python --buildsystem=pybuild I: pybuild base:217: python3.9 setup.py config running config I: pybuild base:217: python3.8 setup.py config running config make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p debian/tmp_save_tests cp -a tests/* debian/tmp_save_tests dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam make[2]: Entering directory '/<>' /usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo /usr/bin/swig -c++ -python -I./../include -o swig/python/swig_wrap.cpp swig/jellyfish.i /usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i make all-am make[3]: Entering directory '/<>' g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/count_main.o sub_commands/count_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/info_main.o sub_commands/info_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/dump_main.o sub_commands/dump_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/histo_main.o sub_commands/histo_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/stats_main.o sub_commands/stats_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/merge_main.o sub_commands/merge_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/bc_main.o sub_commands/bc_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/query_main.o sub_commands/query_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/cite_main.o sub_commands/cite_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/mem_main.o sub_commands/mem_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/merge_files.o jellyfish/merge_files.cc /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/rectangular_binary_matrix.lo lib/rectangular_binary_matrix.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/rectangular_binary_matrix.cc -fPIC -DPIC -o lib/.libs/rectangular_binary_matrix.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/rectangular_binary_matrix.cc -o lib/rectangular_binary_matrix.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/mer_dna.lo lib/mer_dna.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/mer_dna.cc -fPIC -DPIC -o lib/.libs/mer_dna.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/mer_dna.cc -o lib/mer_dna.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/storage.lo lib/storage.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/storage.cc -fPIC -DPIC -o lib/.libs/storage.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/storage.cc -o lib/storage.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/allocators_mmap.lo lib/allocators_mmap.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/allocators_mmap.cc -fPIC -DPIC -o lib/.libs/allocators_mmap.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/allocators_mmap.cc -o lib/allocators_mmap.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/misc.lo lib/misc.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/misc.cc -fPIC -DPIC -o lib/.libs/misc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/misc.cc -o lib/misc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/int128.lo lib/int128.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/int128.cc -fPIC -DPIC -o lib/.libs/int128.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/int128.cc -o lib/int128.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/thread_exec.lo lib/thread_exec.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/thread_exec.cc -fPIC -DPIC -o lib/.libs/thread_exec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/thread_exec.cc -o lib/thread_exec.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/jsoncpp.lo lib/jsoncpp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/jsoncpp.cpp -fPIC -DPIC -o lib/.libs/jsoncpp.o lib/jsoncpp.cpp:2303:74: error: implicit conversion from 'const Json::Int64' (aka 'const long long') to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Werror,-Wimplicit-int-float-conversion] JSON_ASSERT_MESSAGE( value_.real_ >= minInt64 && value_.real_ <= maxInt64, "Real out of Int64 range" ); ~~ ^~~~~~~~ lib/jsoncpp.cpp:1566:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) ^~~~~~~~~ lib/jsoncpp.cpp:2331:67: error: implicit conversion from 'const Json::UInt64' (aka 'const unsigned long long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Werror,-Wimplicit-int-float-conversion] JSON_ASSERT_MESSAGE( value_.real_ >= 0 && value_.real_ <= maxUInt64, "Real out of UInt64 range" ); ~~ ^~~~~~~~~ lib/jsoncpp.cpp:1566:58: note: expanded from macro 'JSON_ASSERT_MESSAGE' #define JSON_ASSERT_MESSAGE( condition, message ) if (!( condition )) JSON_FAIL_MESSAGE( message ) ^~~~~~~~~ 2 errors generated. make[3]: *** [Makefile:2149: lib/jsoncpp.lo] Error 1 make[3]: Leaving directory '/<>' make[2]: *** [Makefile:1025: all] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam returned exit code 2 make[1]: *** [debian/rules:78: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:21: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-10-29T19:25:29Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 18480 Build-Time: 40 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 16 Job: jellyfish_2.3.0-6 Machine Architecture: amd64 Package: jellyfish Package-Time: 73 Source-Version: 2.3.0-6 Space: 18480 Status: attempted Version: 2.3.0-6 -------------------------------------------------------------------------------- Finished at 2020-10-29T19:25:29Z Build needed 00:01:13, 18480k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 73.686711412s DC-Time-Estimation: 73.686711412 versus expected 321 (r/m: 3.3562807166846187 ; m: 73.686711412)