DC-Build-Header: pnetcdf 1.12.1-3 / 2020-10-29 18:21:02 +0000 DC-Task: type:rebuild-binarch-only source:pnetcdf version:1.12.1-3 chroot:unstable esttime:1068 logfile:/tmp/pnetcdf_1.12.1-3_unstable_clang11.log modes:clang11:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang11 pnetcdf_1.12.1-3' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-5-100.eu-central-1.compute.internal +==============================================================================+ | pnetcdf 1.12.1-3 (amd64) Thu, 29 Oct 2020 18:21:02 +0000 | +==============================================================================+ Package: pnetcdf Version: 1.12.1-3 Source Version: 1.12.1-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-250a3c53-815a-4571-bdc4-b8519e1967cb' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang11 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=10 + echo 'Install of clang-10' Install of clang-10 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [146 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [734 B] Ign:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [734 B] Ign:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index Get:4 http://127.0.0.1:12990/debian sid/main Translation-en [6391 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources [8989 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 Packages [8492 kB] Fetched 24.0 MB in 3s (6990 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-10 libomp-10-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc4 libomp5-10 libz3-4 Suggested packages: clang-10-doc libomp-10-doc Recommended packages: llvm-10-dev python3 The following NEW packages will be installed: clang-10 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc-9-dev libobjc4 libomp-10-dev libomp5-10 libz3-4 0 upgraded, 19 newly installed, 0 to remove and 1 not upgraded. Need to get 52.3 MB of archives. After this operation, 274 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libllvm10 amd64 1:10.0.1-7 [16.6 MB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp10 amd64 1:10.0.1-7 [9069 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-2.1 [239 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10.2.0-15 [41.6 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libobjc-10-dev amd64 10.2.0-15 [170 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.31-4 [2815 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10.2.0-15 [49.4 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10.2.0-15 [511 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-10-dev amd64 1:10.0.1-7 [5062 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libclang1-10 amd64 1:10.0.1-7 [7293 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 clang-10 amd64 1:10.0.1-7 [106 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.3.0-18 [390 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.3.0-18 [2347 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.3.0-18 [220 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libomp5-10 amd64 1:10.0.1-7 [339 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libomp-10-dev amd64 1:10.0.1-7 [86.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.3 MB in 0s (144 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12312 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20191231-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../02-libz3-4_4.8.9-1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.9-1) ... Selecting previously unselected package libllvm10:amd64. Preparing to unpack .../03-libllvm10_1%3a10.0.1-7_amd64.deb ... Unpacking libllvm10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libclang-cpp10. Preparing to unpack .../04-libclang-cpp10_1%3a10.0.1-7_amd64.deb ... Unpacking libclang-cpp10 (1:10.0.1-7) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../05-libgc1_1%3a8.0.4-2.1_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-2.1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../06-libobjc4_10.2.0-15_amd64.deb ... Unpacking libobjc4:amd64 (10.2.0-15) ... Selecting previously unselected package libobjc-10-dev:amd64. Preparing to unpack .../07-libobjc-10-dev_10.2.0-15_amd64.deb ... Unpacking libobjc-10-dev:amd64 (10.2.0-15) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../08-libc6-i386_2.31-4_amd64.deb ... 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Unpacking libasan5:amd64 (9.3.0-18) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../15-libgcc-9-dev_9.3.0-18_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../16-libobjc-9-dev_9.3.0-18_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libomp5-10:amd64. Preparing to unpack .../17-libomp5-10_1%3a10.0.1-7_amd64.deb ... Unpacking libomp5-10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libomp-10-dev. Preparing to unpack .../18-libomp-10-dev_1%3a10.0.1-7_amd64.deb ... Unpacking libomp-10-dev (1:10.0.1-7) ... Setting up libasan5:amd64 (9.3.0-18) ... Setting up libz3-4:amd64 (4.8.9-1) ... Setting up libgc1:amd64 (1:8.0.4-2.1) ... Setting up libomp5-10:amd64 (1:10.0.1-7) ... Setting up libc6-i386 (2.31-4) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libomp-10-dev (1:10.0.1-7) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libobjc4:amd64 (10.2.0-15) ... Setting up libllvm10:amd64 (1:10.0.1-7) ... Setting up libgcc-9-dev:amd64 (9.3.0-18) ... Setting up lib32gcc-s1 (10.2.0-15) ... Setting up lib32stdc++6 (10.2.0-15) ... Setting up libclang1-10 (1:10.0.1-7) ... Setting up libobjc-9-dev:amd64 (9.3.0-18) ... Setting up libobjc-10-dev:amd64 (10.2.0-15) ... Setting up libclang-common-10-dev (1:10.0.1-7) ... Setting up libclang-cpp10 (1:10.0.1-7) ... Setting up clang-10 (1:10.0.1-7) ... Processing triggers for libc-bin (2.31-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-10 g++-4.6 + ln -s clang-10 gcc-4.6 + ln -s clang-10 cpp-4.6 + ln -s clang-10 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-10 g++-4.7 + ln -s clang-10 gcc-4.7 + ln -s clang-10 cpp-4.7 + ln -s clang-10 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-10 g++-4.8 + ln -s clang-10 gcc-4.8 + ln -s clang-10 cpp-4.8 + ln -s clang-10 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-10 g++-4.9 + ln -s clang-10 gcc-4.9 + ln -s clang-10 cpp-4.9 + ln -s clang-10 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-10 g++-5 + ln -s clang-10 gcc-5 + ln -s clang-10 cpp-5 + ln -s clang-10 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-10 g++-6 + ln -s clang-10 gcc-6 + ln -s clang-10 cpp-6 + ln -s clang-10 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-10 g++-7 + ln -s clang-10 gcc-7 + ln -s clang-10 cpp-7 + ln -s clang-10 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-10 g++-8 + ln -s clang-10 gcc-8 + ln -s clang-10 cpp-8 + ln -s clang-10 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-10 g++-9 + ln -s clang-10 gcc-9 + ln -s clang-10 cpp-9 + ln -s clang-10 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-10 g++-10 + ln -s clang-10 gcc-10 + ln -s clang-10 cpp-10 + ln -s clang-10 gcc + echo 'gcc-10 hold' + dpkg --set-selections + echo 'g++-10 hold' + dpkg --set-selections + cd - /build/pnetcdf-dEEf4f + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-10 clang++ + ln -s clang-10 clang + clang++ --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/pnetcdf-dEEf4f + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 1 not upgraded. Need to get 1304 kB of archives. After this operation, 4865 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.14.2+dfsg-6 [1035 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.14.2+dfsg-6 [242 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1304 kB in 0s (20.9 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13315 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake-bin (5.14.2+dfsg-6) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake:amd64 (5.14.2+dfsg-6) ... Setting up qt5-qmake-bin (5.14.2+dfsg-6) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.14.2+dfsg-6) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 29 18:21 . drwxr-xr-x 76 root root 4096 Oct 29 18:21 .. -rw-r--r-- 1 root root 276 Oct 29 18:21 qmake.conf -rw-r--r-- 1 root root 3218 Oct 29 18:21 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang11'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/pnetcdf-dEEf4f/resolver-2bkWFK' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libdebconfclient0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 49.6 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libdebconfclient0 amd64 0.255 [49.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.6 kB in 0s (3596 kB/s) (Reading database ... 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Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pnetcdf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org:/science-team/pnetcdf.git Please use: git clone https://salsa.debian.org:/science-team/pnetcdf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1527 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main pnetcdf 1.12.1-3 (dsc) [2427 B] Get:2 http://127.0.0.1:12990/debian sid/main pnetcdf 1.12.1-3 (tar) [1518 kB] Get:3 http://127.0.0.1:12990/debian sid/main pnetcdf 1.12.1-3 (diff) [6624 B] Fetched 1527 kB in 0s (14.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pnetcdf-dEEf4f/pnetcdf-1.12.1' with '<>' I: NOTICE: Log filtering will replace 'build/pnetcdf-dEEf4f' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), gfortran | fortran-compiler, dh-fortran-mod, mpi-default-dev, libutf8proc-dev, chrpath, texlive-latex-base, ghostscript, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), gfortran, dh-fortran-mod, mpi-default-dev, libutf8proc-dev, chrpath, texlive-latex-base, ghostscript, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [437 B] Get:5 copy:/<>/apt_archive ./ Packages [511 B] Fetched 1905 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper dh-autoreconf dh-fortran-mod dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern fonts-urw-base35 gettext gettext-base gfortran gfortran-10 ghostscript groff-base ibverbs-providers intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libcairo2 libcbor0 libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-libmagic-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libkpathsea6 liblcms2-2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenjp2-7 libopenmpi-dev libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpmix-dev libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 libptexenc1 librdmacm1 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libucx0 libutf8proc-dev libutf8proc2 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mpi-default-dev node-jquery ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf poppler-data sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-10-multilib gfortran-10-doc libcoarrays-dev ghostscript-x groff cups-common libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum perl-tk xpdf | pdf-viewer xzdec texlive-latex-base-doc Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common libcoarrays-openmpi-dev xauth libmail-sendmail-perl lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper dh-autoreconf dh-fortran-mod dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern fonts-urw-base35 gettext gettext-base gfortran gfortran-10 ghostscript groff-base ibverbs-providers intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libcairo2 libcbor0 libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-libmagic-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libkpathsea6 liblcms2-2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenjp2-7 libopenmpi-dev libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpmix-dev libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 libptexenc1 librdmacm1 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libucx0 libutf8proc-dev libutf8proc2 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mpi-default-dev node-jquery ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf poppler-data sbuild-build-depends-main-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils zlib1g-dev 0 upgraded, 149 newly installed, 0 to remove and 0 not upgraded. Need to get 100 MB of archives. After this operation, 386 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 tex-common all 6.15 [53.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libfido2-1 amd64 1.5.0-2 [52.3 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 openssh-client amd64 1:8.4p1-2 [928 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.2-4 [801 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-14 [513 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.66.1-2 [1362 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-6.1 [692 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13.2.1 [1007 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libfile-libmagic-perl amd64 1.23-1 [33.3 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 dh-fortran-mod all 0.17 [12.1 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 fonts-lmodern all 2.004.5-6 [4539 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 libgfortran5 amd64 10.2.0-15 [728 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 libgfortran-10-dev amd64 10.2.0-15 [770 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 gfortran-10 amd64 10.2.0-15 [8441 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 gfortran amd64 4:10.2.0-1 [1432 B] Get:52 http://127.0.0.1:12990/debian sid/main amd64 libgs9-common all 9.53.3~dfsg-5 [733 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common-data amd64 0.8-3 [126 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common3 amd64 0.8-3 [58.3 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 libdbus-1-3 amd64 1.12.20-1 [217 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 libavahi-client3 amd64 0.8-3 [61.7 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 libcups2 amd64 2.3.3-3 [348 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b1 [282 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 libfreetype6 amd64 2.10.2+dfsg-4 [410 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 libidn11 amd64 1.33-2.4 [116 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 libjbig2dec0 amd64 0.19-1 [66.9 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 liblcms2-2 amd64 2.9-4+b1 [146 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 libopenjp2-7 amd64 2.3.1-1 [159 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 libgs9 amd64 9.53.3~dfsg-5 [2228 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 ghostscript amd64 9.53.3~dfsg-5 [97.2 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 libibverbs1 amd64 31.0-1 [57.2 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 ibverbs-providers amd64 31.0-1 [239 kB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:80 http://127.0.0.1:12990/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 libx11-data all 2:1.6.12-1 [311 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libx11-6 amd64 2:1.6.12-1 [770 kB] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:86 http://127.0.0.1:12990/debian sid/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:87 http://127.0.0.1:12990/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:88 http://127.0.0.1:12990/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:89 http://127.0.0.1:12990/debian sid/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:90 http://127.0.0.1:12990/debian sid/main amd64 libevent-2.1-7 amd64 2.1.12-stable-1 [188 kB] Get:91 http://127.0.0.1:12990/debian sid/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:92 http://127.0.0.1:12990/debian sid/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-1 [110 kB] Get:93 http://127.0.0.1:12990/debian sid/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:94 http://127.0.0.1:12990/debian sid/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-1 [64.1 kB] Get:95 http://127.0.0.1:12990/debian sid/main amd64 libevent-dev amd64 2.1.12-stable-1 [311 kB] Get:96 http://127.0.0.1:12990/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6+b1 [169 kB] Get:97 http://127.0.0.1:12990/debian sid/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:98 http://127.0.0.1:12990/debian sid/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:99 http://127.0.0.1:12990/debian sid/main amd64 librdmacm1 amd64 31.0-1 [68.1 kB] Get:100 http://127.0.0.1:12990/debian sid/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:101 http://127.0.0.1:12990/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:102 http://127.0.0.1:12990/debian sid/main amd64 libharfbuzz0b amd64 2.6.7-1 [1467 kB] Get:103 http://127.0.0.1:12990/debian sid/main amd64 libhwloc15 amd64 2.3.0+dfsg-2 [145 kB] Get:104 http://127.0.0.1:12990/debian sid/main amd64 libnuma-dev amd64 2.0.12-1+b1 [39.3 kB] Get:105 http://127.0.0.1:12990/debian sid/main amd64 libltdl7 amd64 2.4.6-14 [390 kB] Get:106 http://127.0.0.1:12990/debian sid/main amd64 libltdl-dev amd64 2.4.6-14 [162 kB] Get:107 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-dev amd64 2.3.0+dfsg-2 [223 kB] Get:108 http://127.0.0.1:12990/debian sid/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:109 http://127.0.0.1:12990/debian sid/main amd64 libxnvctrl0 amd64 450.66-1 [26.5 kB] Get:110 http://127.0.0.1:12990/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.12-4 [37.8 kB] Get:111 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-plugins amd64 2.3.0+dfsg-2 [20.9 kB] Get:112 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-dev amd64 3.4.0-1+b1 [102 kB] Get:113 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-dev amd64 3.4.0-1+b1 [176 kB] Get:114 http://127.0.0.1:12990/debian sid/main amd64 libibverbs-dev amd64 31.0-1 [534 kB] Get:115 http://127.0.0.1:12990/debian sid/main amd64 x11-common all 1:7.7+21 [252 kB] Get:116 http://127.0.0.1:12990/debian sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:117 http://127.0.0.1:12990/debian sid/main amd64 node-jquery all 3.5.1+dfsg-4 [309 kB] Get:118 http://127.0.0.1:12990/debian sid/main amd64 libjs-jquery all 3.5.1+dfsg-4 [3612 B] Get:119 http://127.0.0.1:12990/debian sid/main amd64 libjs-jquery-ui all 1.12.1+dfsg-7 [232 kB] Get:120 http://127.0.0.1:12990/debian sid/main amd64 libkpathsea6 amd64 2020.20200327.54578-5 [172 kB] Get:121 http://127.0.0.1:12990/debian sid/main amd64 libpmix2 amd64 3.2.0-1 [448 kB] Get:122 http://127.0.0.1:12990/debian sid/main amd64 libucx0 amd64 1.9.0~rc1-2 [660 kB] Get:123 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi3 amd64 4.0.5-7 [2166 kB] Get:124 http://127.0.0.1:12990/debian sid/main amd64 openmpi-common all 4.0.5-7 [73.7 kB] Get:125 http://127.0.0.1:12990/debian sid/main amd64 libpmix-dev amd64 3.2.0-1 [552 kB] Get:126 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:127 http://127.0.0.1:12990/debian sid/main amd64 openmpi-bin amd64 4.0.5-7 [127 kB] Get:128 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi-dev amd64 4.0.5-7 [1090 kB] Get:129 http://127.0.0.1:12990/debian sid/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:130 http://127.0.0.1:12990/debian sid/main amd64 libptexenc1 amd64 2020.20200327.54578-5 [64.4 kB] Get:131 http://127.0.0.1:12990/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:132 http://127.0.0.1:12990/debian sid/main amd64 libsynctex2 amd64 2020.20200327.54578-5 [83.1 kB] Get:133 http://127.0.0.1:12990/debian sid/main amd64 libteckit0 amd64 2.5.10+ds1-3 [329 kB] Get:134 http://127.0.0.1:12990/debian sid/main amd64 libtexlua53 amd64 2020.20200327.54578-5 [131 kB] Get:135 http://127.0.0.1:12990/debian sid/main amd64 libtexluajit2 amd64 2020.20200327.54578-5 [267 kB] Get:136 http://127.0.0.1:12990/debian sid/main amd64 libutf8proc2 amd64 2.5.0-1 [54.2 kB] Get:137 http://127.0.0.1:12990/debian sid/main amd64 libutf8proc-dev amd64 2.5.0-1 [58.8 kB] Get:138 http://127.0.0.1:12990/debian sid/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:139 http://127.0.0.1:12990/debian sid/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:140 http://127.0.0.1:12990/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:141 http://127.0.0.1:12990/debian sid/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:142 http://127.0.0.1:12990/debian sid/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:143 http://127.0.0.1:12990/debian sid/main amd64 libzzip-0-13 amd64 0.13.62-3.2 [55.4 kB] Get:144 http://127.0.0.1:12990/debian sid/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get:145 http://127.0.0.1:12990/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:146 http://127.0.0.1:12990/debian sid/main amd64 texlive-binaries amd64 2020.20200327.54578-5 [10.1 MB] Get:147 http://127.0.0.1:12990/debian sid/main amd64 xdg-utils all 1.1.3-2 [74.6 kB] Get:148 http://127.0.0.1:12990/debian sid/main amd64 texlive-base all 2020.20200925-1 [21.5 MB] Get:149 http://127.0.0.1:12990/debian sid/main amd64 texlive-latex-base all 2020.20200925-1 [1071 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 100 MB in 1s (137 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14056 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../005-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... 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Setting up libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.5.0-2) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.1) ... Setting up xdg-utils (1.1.3-2) ... Setting up chrpath (0.16-2+b1) ... Setting up node-jquery (3.5.1+dfsg-4) ... Setting up libsynctex2:amd64 (2020.20200327.54578-5) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libgs9-common (9.53.3~dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libtool (2.4.6-14) ... Setting up openssh-client (1:8.4p1-2) ... Setting up libavahi-common3:amd64 (0.8-3) ... 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Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libibverbs1:amd64 (31.0-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up ibverbs-providers:amd64 (31.0-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libhwloc-plugins:amd64 (2.3.0+dfsg-2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.15) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Setting up libltdl-dev:amd64 (2.4.6-14) ... Setting up libjs-jquery-ui (1.12.1+dfsg-7) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up libcups2:amd64 (2.3.3-3) ... Setting up libhwloc-dev:amd64 (2.3.0+dfsg-2) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up librdmacm1:amd64 (31.0-1) ... Setting up libucx0:amd64 (1.9.0~rc1-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libgs9:amd64 (9.53.3~dfsg-5) ... Setting up libpmix2:amd64 (3.2.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libibverbs-dev:amd64 (31.0-1) ... Setting up ghostscript (9.53.3~dfsg-5) ... Setting up libcairo2:amd64 (1.16.0-4) ... Setting up texlive-binaries (2020.20200327.54578-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2020.20200925-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libpmix-dev:amd64 (3.2.0-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libopenmpi3:amd64 (4.0.5-7) ... Setting up texlive-latex-base (2020.20200925-1) ... Setting up openmpi-bin (4.0.5-7) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.0.5-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up debhelper (13.2.1) ... Setting up dh-fortran-mod (0.17) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... Processing triggers for tex-common (6.15) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 mips64el ppc64el s390x alpha ia64 sparc64 kfreebsd-amd64 ppc64 riscv64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2 dpkg-dev_1.20.5 g++-10_10.2.0-15 gcc-10_10.2.0-15 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-15 libstdc++6_10.2.0-15 linux-libc-dev_5.9.1-1 Package versions: adduser_3.118 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc1-2 binutils_2.35.1-2 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amd64 arm64 mips64el ppc64el s390x alpha ia64 sparc64 kfreebsd-amd64 ppc64 riscv64 Version: 1.12.1-3 Maintainer: Alastair McKinstry Homepage: https://trac.mcs.anl.gov/projects/parallel-netcdf Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org:/science-team/pnetcdf.git Vcs-Git: https://salsa.debian.org:/science-team/pnetcdf.git Build-Depends: debhelper-compat (= 13), gfortran | fortran-compiler, dh-fortran-mod, mpi-default-dev, libutf8proc-dev, chrpath, texlive-latex-base, ghostscript Package-List: libpnetcdf-dev deb libdevel optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,sparc64,kfreebsd-amd64,ppc64,riscv64 libpnetcdf0d deb libs optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,sparc64,kfreebsd-amd64,ppc64,riscv64 pnetcdf-bin deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,sparc64,kfreebsd-amd64,ppc64,riscv64 Checksums-Sha1: 0599c8b98689ea8468fa85fe633608f56c2e8579 1517588 pnetcdf_1.12.1.orig.tar.xz 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---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-250a3c53-815a-4571-bdc4-b8519e1967cb SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package pnetcdf dpkg-buildpackage: info: source version 1.12.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alastair McKinstry dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean # --with fortran_mod debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build-* make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpnetcdf-dev.substvars debian/pnetcdf-bin.substvars debian/libpnetcdf0d.substvars debian/files rm -fr -- debian/libpnetcdf-dev/ debian/tmp/ debian/pnetcdf-bin/ debian/libpnetcdf0d/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build # --with fortran_mod dh_update_autotools_config install -d debian/.debhelper/bucket/files cp -an --reflink=auto scripts/config.guess debian/.debhelper/bucket/files/913077d5113ce99ff97f6b22e232549f2c93241fcd174b00b84af704f2d364fa.tmp mv debian/.debhelper/bucket/files/913077d5113ce99ff97f6b22e232549f2c93241fcd174b00b84af704f2d364fa.tmp debian/.debhelper/bucket/files/913077d5113ce99ff97f6b22e232549f2c93241fcd174b00b84af704f2d364fa cp -f /usr/share/misc/config.guess ./scripts/config.guess cp -an --reflink=auto scripts/config.sub debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472.tmp mv debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472.tmp debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472 cp -f /usr/share/misc/config.sub ./scripts/config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './scripts'. libtoolize: copying file './scripts/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found configure.ac:386: installing './scripts/ar-lib' configure.ac:307: installing './scripts/compile' configure.ac:44: installing './scripts/install-sh' configure.ac:44: installing './scripts/missing' benchmarks/C/Makefile.am: installing './scripts/depcomp' parallel-tests: installing './scripts/test-driver' test/testcases/Makefile.am:85: warning: variable 'nodist_erange_fill_SOURCES' is defined but no program or test/testcases/Makefile.am:85: library has 'erange_fill' as canonical name (possible typo) find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure --builddirectory=build-static install -d /<>/debian/.debhelper/generated/_source/home install -d build-static cd build-static && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for rm... yes checking for gawk... (cached) mawk checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for sed handling option -i ... /bin/sed -i'' checking for mpicc... /usr/bin/mpicc checking for gcc... /usr/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/mpicc accepts -g... yes checking for /usr/bin/mpicc option to accept ISO C89... none needed checking whether /usr/bin/mpicc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of /usr/bin/mpicc... none checking how to run the C preprocessor... /usr/bin/mpicc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for MPI_Comm_rank... yes checking for MPI_File_open... yes checking MPI C compiler base... CLANG checking MPI Standard version implemented... 3.1 checking whether MPICH_VERSION is declared... no checking whether MPICH2_VERSION is declared... no checking whether OMPI_MAJOR_VERSION is declared... yes checking whether MVAPICH2_VERSION is declared... no checking MPI vendor... OpenMPI 4.0.5 checking whether /usr/bin/mpicc is a wrapper of a C++ compiler... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /usr/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/bin/mpicc supports -fno-rtti -fno-exceptions... yes checking for /usr/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicc static flag -static works... no checking if /usr/bin/mpicc supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for mpicxx... /usr/bin/mpicxx checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/mpicxx accepts -g... yes checking dependency style of /usr/bin/mpicxx... none checking how to run the C++ preprocessor... /usr/bin/mpicxx -E checking for ld used by /usr/bin/mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicxx static flag -static works... no checking if /usr/bin/mpicxx supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... no checking for mpif77... /usr/bin/mpif77 checking for mpif90... /usr/bin/mpif90 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/bin/mpif77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif77 option to produce PIC... -fPIC checking if /usr/bin/mpif77 PIC flag -fPIC works... yes checking if /usr/bin/mpif77 static flag -static works... no checking if /usr/bin/mpif77 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif77 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif77 ... -v checking for Fortran 77 libraries of /usr/bin/mpif77 ... -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent_core -levent_pthreads -lutil -lrt -lz -lquadmath -lpthread checking whether /usr/bin/mpif77 is a valid MPI compiler... yes checking whether we are using the GNU Fortran compiler... yes checking whether /usr/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif90 option to produce PIC... -fPIC checking if /usr/bin/mpif90 PIC flag -fPIC works... yes checking if /usr/bin/mpif90 static flag -static works... no checking if /usr/bin/mpif90 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif90 ... -v checking for Fortran libraries of /usr/bin/mpif90 ... -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent_core -levent_pthreads -lutil -lrt -lz -lquadmath -lpthread checking whether mpi.mod is available... yes checking whether /usr/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking if MPI Fortran 90 compiler is NAG Fortran... no checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... no checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... no checking whether MPI_COMBINER_STRUCT_INTEGER is defined... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... /usr/bin/latex checking for dvipdf... /usr/bin/dvipdf checking for mpiexec... /usr/bin/mpiexec checking for clang... /usr/bin/clang checking C compiler for serial utility programs... /usr/bin/clang checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: cannot remove 'libtoolT': No such file or directory ------------------------------------------------------------------------------ PnetCDF Version 1.12.1 Features: Build static libraries - yes Build shared libraries - no Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /usr/bin/mpicc MPICXX = /usr/bin/mpicxx MPIF77 = /usr/bin/mpif77 MPIF90 = /usr/bin/mpif90 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 CFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security CXXFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security FFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch FCFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch LDFLAGS = -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /usr ------------------------------------------------------------------------------ OMPI_CFLAGS=" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" OMPI_CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" \ OMPI_FCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch" OMPI_FFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch" \ OMPI_LDFLAGS="-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed" \ OMPI_FC=gfortran FC=gfortran dh_auto_configure --builddirectory=build-shared -- \ CFLAGS=" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" \ FCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" FFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" \ LDFLAGS="-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" \ OMPI_CFLAGS=" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" OMPI_CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" \ OMPI_FCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" OMPI_FFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" \ OMPI_LDFLAGS="-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" \ OMPI_FC=gfortran FC=gfortran install -d build-shared cd build-shared && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking "CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" "FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" "LDFLAGS=-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" "OMPI_CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "OMPI_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "OMPI_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" "OMPI_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g" "OMPI_LDFLAGS=-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" OMPI_FC=gfortran FC=gfortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for rm... yes checking for gawk... (cached) mawk checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for sed handling option -i ... /bin/sed -i'' checking for mpicc... /usr/bin/mpicc checking for gcc... /usr/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/mpicc accepts -g... yes checking for /usr/bin/mpicc option to accept ISO C89... none needed checking whether /usr/bin/mpicc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of /usr/bin/mpicc... none checking how to run the C preprocessor... /usr/bin/mpicc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for MPI_Comm_rank... yes checking for MPI_File_open... yes checking MPI C compiler base... CLANG checking MPI Standard version implemented... 3.1 checking whether MPICH_VERSION is declared... no checking whether MPICH2_VERSION is declared... no checking whether OMPI_MAJOR_VERSION is declared... yes checking whether MVAPICH2_VERSION is declared... no checking MPI vendor... OpenMPI 4.0.5 checking whether /usr/bin/mpicc is a wrapper of a C++ compiler... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /usr/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/bin/mpicc supports -fno-rtti -fno-exceptions... yes checking for /usr/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicc static flag -static works... no checking if /usr/bin/mpicc supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for mpicxx... /usr/bin/mpicxx checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/mpicxx accepts -g... yes checking dependency style of /usr/bin/mpicxx... none checking how to run the C++ preprocessor... /usr/bin/mpicxx -E checking for ld used by /usr/bin/mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicxx static flag -static works... no checking if /usr/bin/mpicxx supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... no checking for mpif77... /usr/bin/mpif77 checking for mpif90... /usr/bin/mpif90 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/bin/mpif77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif77 option to produce PIC... -fPIC checking if /usr/bin/mpif77 PIC flag -fPIC works... yes checking if /usr/bin/mpif77 static flag -static works... no checking if /usr/bin/mpif77 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif77 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif77 ... -v checking for Fortran 77 libraries of /usr/bin/mpif77 ... -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent_core -levent_pthreads -lutil -lrt -lz -lquadmath checking whether /usr/bin/mpif77 is a valid MPI compiler... yes checking whether we are using the GNU Fortran compiler... yes checking whether /usr/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif90 option to produce PIC... -fPIC checking if /usr/bin/mpif90 PIC flag -fPIC works... yes checking if /usr/bin/mpif90 static flag -static works... no checking if /usr/bin/mpif90 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif90 ... -v checking for Fortran libraries of /usr/bin/mpif90 ... -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent_core -levent_pthreads -lutil -lrt -lz -lquadmath checking whether mpi.mod is available... yes checking whether /usr/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking if MPI Fortran 90 compiler is NAG Fortran... no checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... no checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... no checking whether MPI_COMBINER_STRUCT_INTEGER is defined... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... /usr/bin/latex checking for dvipdf... /usr/bin/dvipdf checking for mpiexec... /usr/bin/mpiexec checking for clang... /usr/bin/clang checking C compiler for serial utility programs... /usr/bin/clang checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: cannot remove 'libtoolT': No such file or directory ------------------------------------------------------------------------------ PnetCDF Version 1.12.1 Features: Build static libraries - yes Build shared libraries - no Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /usr/bin/mpicc MPICXX = /usr/bin/mpicxx MPIF77 = /usr/bin/mpif77 MPIF90 = /usr/bin/mpif90 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 CFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g CXXFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g FFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g FCFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -fPIC -g LDFLAGS = -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /usr ------------------------------------------------------------------------------ make[1]: Leaving directory '/<>' rm -f debian/libpnetcdf-dev.debhelper.log debian/libpnetcdf0d.debhelper.log debian/pnetcdf-bin.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make -C build-static make[2]: Entering directory '/<>/build-static' Making all in src make[3]: Entering directory '/<>/build-static/src' Making all in include make[4]: Entering directory '/<>/build-static/src/include' /usr/bin/make all-am make[5]: Entering directory '/<>/build-static/src/include' make[5]: Leaving directory '/<>/build-static/src/include' make[4]: Leaving directory '/<>/build-static/src/include' Making all in dispatchers make[4]: Entering directory '/<>/build-static/src/dispatchers' m4 -DPNETCDF -I../../../m4 ../../../src/dispatchers/attr_getput.m4 >attr_getput.c m4 -DPNETCDF -I../../../m4 ../../../src/dispatchers/var_getput.m4 >var_getput.c /usr/bin/make all-am make[5]: Entering directory '/<>/build-static/src/dispatchers' /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib_version.lo ../../../src/dispatchers/lib_version.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/lib_version.c -o lib_version.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o file.lo ../../../src/dispatchers/file.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/file.c -o file.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dimension.lo ../../../src/dispatchers/dimension.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/dimension.c -o dimension.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o variable.lo ../../../src/dispatchers/variable.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/variable.c -o variable.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o attribute.lo ../../../src/dispatchers/attribute.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/attribute.c -o attribute.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o error_codes.lo ../../../src/dispatchers/error_codes.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/error_codes.c -o error_codes.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o attr_getput.lo attr_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c attr_getput.c -o attr_getput.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o var_getput.lo var_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c var_getput.c -o var_getput.o /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libdispatchers.la lib_version.lo file.lo dimension.lo variable.lo attribute.lo error_codes.lo attr_getput.lo var_getput.lo libtool: link: ar cr .libs/libdispatchers.a lib_version.o file.o dimension.o variable.o attribute.o error_codes.o attr_getput.o var_getput.o libtool: link: ranlib .libs/libdispatchers.a libtool: link: ( cd ".libs" && rm -f "libdispatchers.la" && ln -s "../libdispatchers.la" "libdispatchers.la" ) make[5]: Leaving directory '/<>/build-static/src/dispatchers' make[4]: Leaving directory '/<>/build-static/src/dispatchers' Making all in drivers make[4]: Entering directory '/<>/build-static/src/drivers' Making all in include make[5]: Entering directory '/<>/build-static/src/drivers/include' m4 -DPNETCDF -I../../../../m4 ../../../../src/drivers/include/ncx_h.m4 >ncx.h /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/drivers/include' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/<>/build-static/src/drivers/include' make[5]: Leaving directory '/<>/build-static/src/drivers/include' Making all in common make[5]: Entering directory '/<>/build-static/src/drivers/common' m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/common/ncx.m4 >ncx.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/common/convert_swap.m4 >convert_swap.c /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/drivers/common' /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utf8proc.lo ../../../../src/drivers/common/utf8proc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/utf8proc.c -o utf8proc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mem_alloc.lo ../../../../src/drivers/common/mem_alloc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/mem_alloc.c -o mem_alloc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dtype_decode.lo ../../../../src/drivers/common/dtype_decode.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/dtype_decode.c -o dtype_decode.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o create_imaptype.lo ../../../../src/drivers/common/create_imaptype.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/create_imaptype.c -o create_imaptype.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o error_mpi2nc.lo ../../../../src/drivers/common/error_mpi2nc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/error_mpi2nc.c -o error_mpi2nc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o check_name.lo ../../../../src/drivers/common/check_name.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/check_name.c -o check_name.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pack_unpack.lo ../../../../src/drivers/common/pack_unpack.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/pack_unpack.c -o pack_unpack.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.lo ../../../../src/drivers/common/utils.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/utils.c -o utils.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o error_posix2nc.lo ../../../../src/drivers/common/error_posix2nc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/error_posix2nc.c -o error_posix2nc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_map.lo ../../../../src/drivers/common/hash_map.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/hash_map.c -o hash_map.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-strict-aliasing -c -o ncx.lo ncx.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-strict-aliasing -c ncx.c -o ncx.o ncx.c:2959:12: warning: implicit conversion from 'long long' to 'float' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-int-float-conversion] if (xx == LONGLONG_MAX) *ip = LONGLONG_MAX; ~~ ^~~~~~~~~~~~ ncx.c:64:22: note: expanded from macro 'LONGLONG_MAX' #define LONGLONG_MAX LONG_LONG_MAX ^~~~~~~~~~~~~ ncx.c:61:23: note: expanded from macro 'LONG_LONG_MAX' #define LONG_LONG_MAX LLONG_MAX ^~~~~~~~~ /usr/lib/llvm-10/lib/clang/10.0.1/include/limits.h:82:20: note: expanded from macro 'LLONG_MAX' #define LLONG_MAX __LONG_LONG_MAX__ ^~~~~~~~~~~~~~~~~ :39:27: note: expanded from here #define __LONG_LONG_MAX__ 9223372036854775807LL ^~~~~~~~~~~~~~~~~~~~~ ncx.c:3019:12: warning: implicit conversion from 'unsigned long long' to 'float' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-int-float-conversion] if (xx == ULONGLONG_MAX) *ip = ULONGLONG_MAX; ~~ ^~~~~~~~~~~~~ ncx.c:76:23: note: expanded from macro 'ULONGLONG_MAX' #define ULONGLONG_MAX ULONG_LONG_MAX ^~~~~~~~~~~~~~ ncx.c:73:24: note: expanded from macro 'ULONG_LONG_MAX' #define ULONG_LONG_MAX ULLONG_MAX ^~~~~~~~~~ /usr/lib/llvm-10/lib/clang/10.0.1/include/limits.h:84:43: note: expanded from macro 'ULLONG_MAX' #define ULLONG_MAX (__LONG_LONG_MAX__*2ULL+1ULL) ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncx.c:3513:12: warning: implicit conversion from 'long long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-int-float-conversion] if (xx == LONGLONG_MAX) *ip = LONGLONG_MAX; ~~ ^~~~~~~~~~~~ ncx.c:64:22: note: expanded from macro 'LONGLONG_MAX' #define LONGLONG_MAX LONG_LONG_MAX ^~~~~~~~~~~~~ ncx.c:61:23: note: expanded from macro 'LONG_LONG_MAX' #define LONG_LONG_MAX LLONG_MAX ^~~~~~~~~ /usr/lib/llvm-10/lib/clang/10.0.1/include/limits.h:82:20: note: expanded from macro 'LLONG_MAX' #define LLONG_MAX __LONG_LONG_MAX__ ^~~~~~~~~~~~~~~~~ :39:27: note: expanded from here #define __LONG_LONG_MAX__ 9223372036854775807LL ^~~~~~~~~~~~~~~~~~~~~ ncx.c:3573:12: warning: implicit conversion from 'unsigned long long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-int-float-conversion] if (xx == ULONGLONG_MAX) *ip = ULONGLONG_MAX; ~~ ^~~~~~~~~~~~~ ncx.c:76:23: note: expanded from macro 'ULONGLONG_MAX' #define ULONGLONG_MAX ULONG_LONG_MAX ^~~~~~~~~~~~~~ ncx.c:73:24: note: expanded from macro 'ULONG_LONG_MAX' #define ULONG_LONG_MAX ULLONG_MAX ^~~~~~~~~~ /usr/lib/llvm-10/lib/clang/10.0.1/include/limits.h:84:43: note: expanded from macro 'ULLONG_MAX' #define ULLONG_MAX (__LONG_LONG_MAX__*2ULL+1ULL) ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncx.c:4236:15: warning: implicit conversion from 'long long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-int-float-conversion] if (*ip > X_INT64_MAX || *ip < X_INT64_MIN) { ~ ^~~~~~~~~~~ ../../../src/drivers/include/ncx.h:89:21: note: expanded from macro 'X_INT64_MAX' #define X_INT64_MAX 9223372036854775807LL ^~~~~~~~~~~~~~~~~~~~~ ncx.c:4727:15: warning: implicit conversion from 'unsigned long long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-int-float-conversion] if (*ip > X_UINT64_MAX || *ip < 0) { ~ ^~~~~~~~~~~~ ../../../src/drivers/include/ncx.h:90:22: note: expanded from macro 'X_UINT64_MAX' #define X_UINT64_MAX 18446744073709551615ULL ^~~~~~~~~~~~~~~~~~~~~~~ 6 warnings generated. /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o convert_swap.lo convert_swap.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c convert_swap.c -o convert_swap.o /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libcommon.la utf8proc.lo mem_alloc.lo dtype_decode.lo create_imaptype.lo error_mpi2nc.lo check_name.lo pack_unpack.lo utils.lo error_posix2nc.lo hash_map.lo ncx.lo convert_swap.lo libtool: link: ar cr .libs/libcommon.a utf8proc.o mem_alloc.o dtype_decode.o create_imaptype.o error_mpi2nc.o check_name.o pack_unpack.o utils.o error_posix2nc.o hash_map.o ncx.o convert_swap.o libtool: link: ranlib .libs/libcommon.a libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" ) make[6]: Leaving directory '/<>/build-static/src/drivers/common' make[5]: Leaving directory '/<>/build-static/src/drivers/common' Making all in ncmpio make[5]: Entering directory '/<>/build-static/src/drivers/ncmpio' m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_getput.m4 >ncmpio_getput.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_i_getput.m4 >ncmpio_i_getput.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_varn.m4 >ncmpio_varn.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_i_varn.m4 >ncmpio_i_varn.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_attr.m4 >ncmpio_attr.c /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/drivers/ncmpio' /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_driver.lo ../../../../src/drivers/ncmpio/ncmpio_driver.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_driver.c -o ncmpio_driver.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_create.lo ../../../../src/drivers/ncmpio/ncmpio_create.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_create.c -o ncmpio_create.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_open.lo ../../../../src/drivers/ncmpio/ncmpio_open.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_open.c -o ncmpio_open.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_enddef.lo ../../../../src/drivers/ncmpio/ncmpio_enddef.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_enddef.c -o ncmpio_enddef.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_close.lo ../../../../src/drivers/ncmpio/ncmpio_close.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_close.c -o ncmpio_close.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_sync.lo ../../../../src/drivers/ncmpio/ncmpio_sync.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_sync.c -o ncmpio_sync.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_file_misc.lo ../../../../src/drivers/ncmpio/ncmpio_file_misc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_file_misc.c -o ncmpio_file_misc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_header_get.lo ../../../../src/drivers/ncmpio/ncmpio_header_get.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_header_get.c -o ncmpio_header_get.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_header_put.lo ../../../../src/drivers/ncmpio/ncmpio_header_put.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_header_put.c -o ncmpio_header_put.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_dim.lo ../../../../src/drivers/ncmpio/ncmpio_dim.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_dim.c -o ncmpio_dim.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_var.lo ../../../../src/drivers/ncmpio/ncmpio_var.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_var.c -o ncmpio_var.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_bput.lo ../../../../src/drivers/ncmpio/ncmpio_bput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_bput.c -o ncmpio_bput.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_filetype.lo ../../../../src/drivers/ncmpio/ncmpio_filetype.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_filetype.c -o ncmpio_filetype.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_wait.lo ../../../../src/drivers/ncmpio/ncmpio_wait.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_wait.c -o ncmpio_wait.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_vard.lo ../../../../src/drivers/ncmpio/ncmpio_vard.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_vard.c -o ncmpio_vard.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_fill.lo ../../../../src/drivers/ncmpio/ncmpio_fill.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_fill.c -o ncmpio_fill.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_util.lo ../../../../src/drivers/ncmpio/ncmpio_util.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_util.c -o ncmpio_util.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_hash_func.lo ../../../../src/drivers/ncmpio/ncmpio_hash_func.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_hash_func.c -o ncmpio_hash_func.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_file_io.lo ../../../../src/drivers/ncmpio/ncmpio_file_io.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_file_io.c -o ncmpio_file_io.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_getput.lo ncmpio_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_getput.c -o ncmpio_getput.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_i_getput.lo ncmpio_i_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_i_getput.c -o ncmpio_i_getput.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_varn.lo ncmpio_varn.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_varn.c -o ncmpio_varn.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_i_varn.lo ncmpio_i_varn.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_i_varn.c -o ncmpio_i_varn.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_attr.lo ncmpio_attr.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_attr.c -o ncmpio_attr.o /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libncmpio.la ncmpio_driver.lo ncmpio_create.lo ncmpio_open.lo ncmpio_enddef.lo ncmpio_close.lo ncmpio_sync.lo ncmpio_file_misc.lo ncmpio_header_get.lo ncmpio_header_put.lo ncmpio_dim.lo ncmpio_var.lo ncmpio_bput.lo ncmpio_filetype.lo ncmpio_wait.lo ncmpio_vard.lo ncmpio_fill.lo ncmpio_util.lo ncmpio_hash_func.lo ncmpio_file_io.lo ncmpio_getput.lo ncmpio_i_getput.lo ncmpio_varn.lo ncmpio_i_varn.lo ncmpio_attr.lo libtool: link: ar cr .libs/libncmpio.a ncmpio_driver.o ncmpio_create.o ncmpio_open.o ncmpio_enddef.o ncmpio_close.o ncmpio_sync.o ncmpio_file_misc.o ncmpio_header_get.o ncmpio_header_put.o ncmpio_dim.o ncmpio_var.o ncmpio_bput.o ncmpio_filetype.o ncmpio_wait.o ncmpio_vard.o ncmpio_fill.o ncmpio_util.o ncmpio_hash_func.o ncmpio_file_io.o ncmpio_getput.o ncmpio_i_getput.o ncmpio_varn.o ncmpio_i_varn.o ncmpio_attr.o libtool: link: ranlib .libs/libncmpio.a libtool: link: ( cd ".libs" && rm -f "libncmpio.la" && ln -s "../libncmpio.la" "libncmpio.la" ) make[6]: Leaving directory '/<>/build-static/src/drivers/ncmpio' make[5]: Leaving directory '/<>/build-static/src/drivers/ncmpio' make[5]: Entering directory '/<>/build-static/src/drivers' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/build-static/src/drivers' make[4]: Leaving directory '/<>/build-static/src/drivers' Making all in binding make[4]: Entering directory '/<>/build-static/src/binding' Making all in cxx make[5]: Entering directory '/<>/build-static/src/binding/cxx' cat ../../../../src/binding/cxx/pnetcdf.in >pnetcdf set -e; for i in ncmpi_notyet.h ncmpiCheck.h ncmpiType.h ncmpiAtt.h ncmpiEnumType.h ncmpiGroupAtt.h ncmpiGroup.h ncmpiByte.h ncmpiChar.h ncmpiCompoundType.h ncmpiDouble.h ncmpiFloat.h ncmpiInt.h ncmpiInt64.h ncmpiOpaqueType.h ncmpiShort.h ncmpiUbyte.h ncmpiUint.h ncmpiUint64.h ncmpiUshort.h ncmpiException.h ncmpiDim.h ncmpiFile.h ncmpiVarAtt.h ncmpiVar.h ncmpiVlenType.h; do ( \ /bin/sed -e '/#ifndef/d' -e '/#define/d' -e '/#endif/d' -e '/#include/d' ../../../../src/binding/cxx/$i >> pnetcdf ; \ ) ; done /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/binding/cxx' /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpi_notyet.lo ../../../../src/binding/cxx/ncmpi_notyet.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. 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) make[6]: Leaving directory '/<>/build-static/src/binding/cxx' make[5]: Leaving directory '/<>/build-static/src/binding/cxx' Making all in f77 make[5]: Entering directory '/<>/build-static/src/binding/f77' /bin/bash ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o strerrorf.lo ../../../../src/binding/f77/strerrorf.f libtool: compile: /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c ../../../../src/binding/f77/strerrorf.f -o strerrorf.o /bin/bash ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o strerrnof.lo ../../../../src/binding/f77/strerrnof.f libtool: compile: /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch 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-Werror=format-security -c -o issyserrf.lo issyserrf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c issyserrf.c -o issyserrf.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o xstrerrorf.lo xstrerrorf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c xstrerrorf.c -o xstrerrorf.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o xstrerrnof.lo xstrerrnof.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c xstrerrnof.c -o xstrerrnof.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o xinq_libversf.lo xinq_libversf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c xinq_libversf.c -o xinq_libversf.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o allf.lo allf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c allf.c -o allf.o /bin/bash ../../../libtool --tag=F77 --mode=link /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libf77.la strerrorf.lo strerrnof.lo inq_libversf.lo issyserrf.lo xstrerrorf.lo xstrerrnof.lo xinq_libversf.lo allf.lo libtool: link: ar cr .libs/libf77.a strerrorf.o strerrnof.o inq_libversf.o issyserrf.o xstrerrorf.o xstrerrnof.o xinq_libversf.o allf.o libtool: link: ranlib .libs/libf77.a libtool: link: ( cd ".libs" && rm -f "libf77.la" && ln -s "../libf77.la" "libf77.la" ) make[5]: Leaving directory '/<>/build-static/src/binding/f77' Making all in f90 make[5]: Entering directory '/<>/build-static/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_text.m4 >getput_text.fh m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_var.m4 >getput_var.fh m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_varn.m4 >getput_varn.fh m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_vard.m4 >getput_vard.fh /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/binding/f90' /bin/bash ../../../libtool --tag=FC --mode=compile /usr/bin/mpif90 -I. -I../../../../src/binding/f90 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o pnetcdf.lo pnetcdf.f90 libtool: compile: /usr/bin/mpif90 -I. -I../../../../src/binding/f90 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c pnetcdf.f90 -o pnetcdf.o getput_vard.fh:1988:86: 1988 | nf90mpi_get_vard_7D_EightByteInt_all = nfmpi_get_vard_all(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2324 | nf90mpi_get_vard_7D_text_all = nfmpi_get_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:1558:86: 1558 | nf90mpi_put_vard_7D_EightByteInt_all = nfmpi_put_vard_all(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2253 | nf90mpi_put_vard_7D_text_all = nfmpi_put_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:1128:78: 1128 | nf90mpi_get_vard_7D_EightByteInt = nfmpi_get_vard(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2178 | nf90mpi_get_vard_7D_text = nfmpi_get_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:698:78: 698 | nf90mpi_put_vard_7D_EightByteInt = nfmpi_put_vard(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2107 | nf90mpi_put_vard_7D_text = nfmpi_put_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_var.fh:23249:84: 23249 | nfmpi_bput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 23782 | nfmpi_bput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:23257:79: 23257 | nfmpi_bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 23790 | nfmpi_bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:23265:66: 23265 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 23798 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20047:84: 20047 | nfmpi_iget_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 20580 | nfmpi_iget_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20055:79: 20055 | nfmpi_iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 20588 | nfmpi_iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20063:66: 20063 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 20596 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16845:84: 16845 | nfmpi_iput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 17378 | nfmpi_iput_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16853:79: 16853 | nfmpi_iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 17386 | nfmpi_iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16861:66: 16861 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 17394 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13645:87: 13645 | nfmpi_get_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 14171 | nfmpi_get_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13653:82: 13653 | nfmpi_get_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 14179 | nfmpi_get_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13661:69: 13661 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 14187 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10486:87: 10486 | nfmpi_put_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 11012 | nfmpi_put_varm_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10494:82: 10494 | nfmpi_put_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 11020 | nfmpi_put_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10502:69: 10502 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 11028 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7326:83: 7326 | nfmpi_get_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 7852 | nfmpi_get_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7334:78: 7334 | nfmpi_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 7860 | nfmpi_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7342:65: 7342 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 7868 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4166:83: 4166 | nfmpi_put_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 4692 | nfmpi_put_varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4174:78: 4174 | nfmpi_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 4700 | nfmpi_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4182:65: 4182 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 4708 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1513:50: 1513 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1550 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1286:50: 1286 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1323 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1059:50: 1059 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1096 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:832:53: 832 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 868 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:615:49: 615 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 651 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:398:53: 398 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 434 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:181:49: 181 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 217 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). variables.fh:215:81: ...... Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). variables.fh:151:81: ...... Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). /bin/bash ../../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I. -I../../../../src/binding/f90 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libf90.la pnetcdf.lo libtool: link: ar cr .libs/libf90.a pnetcdf.o libtool: link: ranlib .libs/libf90.a libtool: link: ( cd ".libs" && rm -f "libf90.la" && ln -s "../libf90.la" "libf90.la" ) make[6]: Leaving directory '/<>/build-static/src/binding/f90' make[5]: Leaving directory '/<>/build-static/src/binding/f90' make[5]: Entering directory '/<>/build-static/src/binding' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/build-static/src/binding' make[4]: Leaving directory '/<>/build-static/src/binding' Making all in packaging make[4]: Entering directory '/<>/build-static/src/packaging' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/src/packaging' Making all in . make[4]: Entering directory '/<>/build-static/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/build-static/src' Making all in libs make[4]: Entering directory '/<>/build-static/src/libs' /bin/bash ../../libtool --tag=CXX --mode=link /usr/bin/mpicxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 4:1:0 -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libpnetcdf.la -rpath /usr/lib/x86_64-linux-gnu ../dispatchers/libdispatchers.la ../drivers/common/libcommon.la ../drivers/ncmpio/libncmpio.la ../binding/cxx/libcxx.la ../binding/f77/libf77.la ../binding/f90/libf90.la libtool: link: (cd .libs/libpnetcdf.lax/libdispatchers.a && ar x "/<>/build-static/src/libs/../dispatchers/.libs/libdispatchers.a") libtool: link: (cd .libs/libpnetcdf.lax/libcommon.a && ar x "/<>/build-static/src/libs/../drivers/common/.libs/libcommon.a") libtool: link: (cd .libs/libpnetcdf.lax/libncmpio.a && ar x "/<>/build-static/src/libs/../drivers/ncmpio/.libs/libncmpio.a") libtool: link: (cd .libs/libpnetcdf.lax/libcxx.a && ar x "/<>/build-static/src/libs/../binding/cxx/.libs/libcxx.a") libtool: link: (cd .libs/libpnetcdf.lax/libf77.a && ar x "/<>/build-static/src/libs/../binding/f77/.libs/libf77.a") libtool: link: (cd .libs/libpnetcdf.lax/libf90.a && ar x "/<>/build-static/src/libs/../binding/f90/.libs/libf90.a") libtool: link: ar cr .libs/libpnetcdf.a .libs/libpnetcdf.lax/libdispatchers.a/attr_getput.o .libs/libpnetcdf.lax/libdispatchers.a/attribute.o .libs/libpnetcdf.lax/libdispatchers.a/dimension.o .libs/libpnetcdf.lax/libdispatchers.a/error_codes.o .libs/libpnetcdf.lax/libdispatchers.a/file.o .libs/libpnetcdf.lax/libdispatchers.a/lib_version.o .libs/libpnetcdf.lax/libdispatchers.a/var_getput.o .libs/libpnetcdf.lax/libdispatchers.a/variable.o .libs/libpnetcdf.lax/libcommon.a/check_name.o .libs/libpnetcdf.lax/libcommon.a/convert_swap.o .libs/libpnetcdf.lax/libcommon.a/create_imaptype.o .libs/libpnetcdf.lax/libcommon.a/dtype_decode.o .libs/libpnetcdf.lax/libcommon.a/error_mpi2nc.o .libs/libpnetcdf.lax/libcommon.a/error_posix2nc.o .libs/libpnetcdf.lax/libcommon.a/hash_map.o .libs/libpnetcdf.lax/libcommon.a/mem_alloc.o .libs/libpnetcdf.lax/libcommon.a/ncx.o .libs/libpnetcdf.lax/libcommon.a/pack_unpack.o .libs/libpnetcdf.lax/libcommon.a/utf8proc.o .libs/libpnetcdf.lax/libcommon.a/utils.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_attr.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_bput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_close.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_create.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_dim.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_driver.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_enddef.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_io.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_misc.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_filetype.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_fill.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_hash_func.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_get.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_put.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_open.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_sync.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_util.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_var.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_vard.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_wait.o .libs/libpnetcdf.lax/libcxx.a/ncmpiAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiByte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiChar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCheck.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCompoundType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDim.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDouble.o .libs/libpnetcdf.lax/libcxx.a/ncmpiEnumType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiException.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFile.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFloat.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroup.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroupAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiOpaqueType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiShort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUbyte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUshort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVarAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVlenType.o .libs/libpnetcdf.lax/libcxx.a/ncmpi_notyet.o .libs/libpnetcdf.lax/libf77.a/allf.o .libs/libpnetcdf.lax/libf77.a/inq_libversf.o .libs/libpnetcdf.lax/libf77.a/issyserrf.o .libs/libpnetcdf.lax/libf77.a/strerrnof.o .libs/libpnetcdf.lax/libf77.a/strerrorf.o .libs/libpnetcdf.lax/libf77.a/xinq_libversf.o .libs/libpnetcdf.lax/libf77.a/xstrerrnof.o .libs/libpnetcdf.lax/libf77.a/xstrerrorf.o .libs/libpnetcdf.lax/libf90.a/pnetcdf.o libtool: link: ranlib .libs/libpnetcdf.a libtool: link: rm -fr .libs/libpnetcdf.lax libtool: link: ( cd ".libs" && rm -f "libpnetcdf.la" && ln -s "../libpnetcdf.la" "libpnetcdf.la" ) make[4]: Leaving directory '/<>/build-static/src/libs' Making all in utils make[4]: Entering directory '/<>/build-static/src/utils' Making all in ncmpigen make[5]: Entering directory '/<>/build-static/src/utils/ncmpigen' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o ../../../../src/utils/ncmpigen/main.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o load.o ../../../../src/utils/ncmpigen/load.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o escapes.o ../../../../src/utils/ncmpigen/escapes.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o getfill.o ../../../../src/utils/ncmpigen/getfill.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o init.o ../../../../src/utils/ncmpigen/init.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o genlib.o ../../../../src/utils/ncmpigen/genlib.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpigentab.o ../../../../src/utils/ncmpigen/ncmpigentab.c /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o ../../../src/libs/.libs/libpnetcdf.a -lgfortran make[5]: Leaving directory '/<>/build-static/src/utils/ncmpigen' Making all in ncmpidump make[5]: Entering directory '/<>/build-static/src/utils/ncmpidump' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidump -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpidump.o ../../../../src/utils/ncmpidump/ncmpidump.c ../../../../src/utils/ncmpidump/ncmpidump.c:575:47: warning: implicit conversion from 'long long' to 'double' changes value from -9223372036854775806 to -9223372036854775808 [-Wimplicit-int-float-conversion] var.fillval = NC_FILL_INT64; ~ ^~~~~~~~~~~~~ ../../../src/include/pnetcdf.h:108:24: note: expanded from macro 'NC_FILL_INT64' #define NC_FILL_INT64 ((long long)-9223372036854775806LL) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../src/utils/ncmpidump/ncmpidump.c:578:47: warning: implicit conversion from 'unsigned long long' to 'double' changes value from 18446744073709551614 to 18446744073709551616 [-Wimplicit-int-float-conversion] var.fillval = NC_FILL_UINT64; ~ ^~~~~~~~~~~~~~ ../../../src/include/pnetcdf.h:109:25: note: expanded from macro 'NC_FILL_UINT64' #define NC_FILL_UINT64 ((unsigned long long)18446744073709551614ULL) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidump -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vardata.o ../../../../src/utils/ncmpidump/vardata.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidump -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dumplib.o ../../../../src/utils/ncmpidump/dumplib.c /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/.libs/libpnetcdf.a -lgfortran make[5]: Leaving directory '/<>/build-static/src/utils/ncmpidump' Making all in ncmpidiff make[5]: Entering directory '/<>/build-static/src/utils/ncmpidiff' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidiff -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpidiff.o ../../../../src/utils/ncmpidiff/ncmpidiff.c /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o ncmpidiff ncmpidiff.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o ncmpidiff ncmpidiff.o ../../../src/libs/.libs/libpnetcdf.a -lgfortran /usr/bin/clang -I../../../../src/utils/ncvalidator -o cdfdiff ../../../../src/utils/ncmpidiff/cdfdiff.c make[5]: Leaving directory '/<>/build-static/src/utils/ncmpidiff' Making all in ncvalidator make[5]: Entering directory '/<>/build-static/src/utils/ncvalidator' /usr/bin/clang -o ncvalidator ../../../../src/utils/ncvalidator/ncvalidator.c make[5]: Leaving directory '/<>/build-static/src/utils/ncvalidator' Making all in pnetcdf_version make[5]: Entering directory '/<>/build-static/src/utils/pnetcdf_version' /usr/bin/clang -DMPICC="\"/usr/bin/mpicc\"" -DCFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security\"" -DCONFIGURE_ARGS_CLEAN="\"--build=x86_64-linux-gnu --prefix=/usr --includedir=/usr/include --mandir=/usr/share/man --infodir=/usr/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=/usr/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking\"" -DPNETCDF_VERSION="\"1.12.1\"" -DMPICXX="\"/usr/bin/mpicxx\"" -DCXXFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security\"" -DMPIF77="\"/usr/bin/mpif77 \"" -DFFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch\"" -DMPIF90="\"/usr/bin/mpif90 \"" -DFCFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch\"" -o pnetcdf_version ../../../../src/utils/pnetcdf_version/pnetcdf_version.c make[5]: Leaving directory '/<>/build-static/src/utils/pnetcdf_version' Making all in ncoffsets make[5]: Entering directory '/<>/build-static/src/utils/ncoffsets' /usr/bin/clang -o ncoffsets ../../../../src/utils/ncoffsets/ncoffsets.c make[5]: Leaving directory '/<>/build-static/src/utils/ncoffsets' make[5]: Entering directory '/<>/build-static/src/utils' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/build-static/src/utils' make[4]: Leaving directory '/<>/build-static/src/utils' make[3]: Leaving directory '/<>/build-static/src' Making all in man make[3]: Entering directory '/<>/build-static/man' m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.12.1 ../../man/pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3 m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.12.1 ../../man/pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3 m4 -DPNETCDF -DPNETCDF_VERSION=1.12.1 ../../man/pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3 make[3]: Leaving directory '/<>/build-static/man' Making all in examples make[3]: Entering directory '/<>/build-static/examples' Making all in C make[4]: Entering directory '/<>/build-static/examples/C' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/C' Making all in tutorial make[4]: Entering directory '/<>/build-static/examples/tutorial' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/tutorial' Making all in CXX make[4]: Entering directory '/<>/build-static/examples/CXX' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/CXX' Making all in F77 make[4]: Entering directory '/<>/build-static/examples/F77' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/F77' Making all in F90 make[4]: Entering directory '/<>/build-static/examples/F90' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/F90' make[4]: Entering directory '/<>/build-static/examples' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/build-static/examples' make[3]: Leaving directory '/<>/build-static/examples' Making all in benchmarks make[3]: Entering directory '/<>/build-static/benchmarks' Making all in C make[4]: Entering directory '/<>/build-static/benchmarks/C' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/benchmarks/C' Making all in FLASH-IO make[4]: Entering directory '/<>/build-static/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o get_mfluid_property.o ../../../benchmarks/FLASH-IO/get_mfluid_property.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o flash_release.o ../../../benchmarks/FLASH-IO/flash_release.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o flash_benchmark_io.o ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90 ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90:228:23: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 228 | call MPI_Reduce(chk_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90:231:23: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 231 | call MPI_Reduce(nocorner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90:234:23: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 234 | call MPI_Reduce(corner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90:295:26: 213 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 295 | call MPI_Reduce(malloc_size, sum_size, 1, MPI_OFFSET, MPI_SUM, & | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/REAL(8)). ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90:71:21: 66 | call MPI_Bcast(isArgvRight, 1, MPI_LOGICAL, MasterPE, & | 2 ...... 71 | call MPI_Bcast(basenm, 128, MPI_CHARACTER, MasterPE, & | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(128)/LOGICAL(4)). ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90:121:39: 114 | nocorner_io = plotfile_ncmpi_par(0, simtime, .false.) | 2 ...... 121 | corner_io = plotfile_ncmpi_par(0,0.e0,.true.) | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o checkpoint_ncmpi_parallel.o ../../../benchmarks/FLASH-IO/checkpoint_ncmpi_parallel.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -c -o plotfile_ncmpi_parallel.o ../../../benchmarks/FLASH-IO/plotfile_ncmpi_parallel.F90 /bin/bash ../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -L../../src/libs -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -lpnetcdf libtool: link: /usr/bin/mpif90 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fallow-invalid-boz -fallow-argument-mismatch -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -L../../src/libs /<>/build-static/src/libs/.libs/libpnetcdf.a -lgfortran /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(attr_getput.o): relocation R_X86_64_32 against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(attribute.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(dimension.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(error_codes.o): relocation R_X86_64_32 against `.bss' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(file.o): relocation R_X86_64_32S against `.bss' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(var_getput.o): relocation R_X86_64_32 against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(variable.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(check_name.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(error_mpi2nc.o): relocation R_X86_64_32S against `.rodata' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(utf8proc.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(utils.o): relocation R_X86_64_32 against symbol `ompi_mpi_char' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_driver.o): relocation R_X86_64_32 against `.data' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_enddef.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_file_misc.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_fill.o): relocation R_X86_64_32S against `.rodata' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_getput.o): relocation R_X86_64_32S against symbol `ompi_mpi_byte' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_header_get.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_header_put.o): relocation R_X86_64_32 against `.rodata' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_i_getput.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_i_varn.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_open.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_sync.o): relocation R_X86_64_32 against symbol `ompi_mpi_file_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_util.o): relocation R_X86_64_32 against symbol `ompi_mpi_info_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_var.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_vard.o): relocation R_X86_64_32S against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_wait.o): relocation R_X86_64_32 against symbol `ompi_mpi_byte' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(convert_swap.o): relocation R_X86_64_32 against symbol `ompi_mpi_char' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(create_imaptype.o): relocation R_X86_64_32S against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(dtype_decode.o): relocation R_X86_64_32S against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncx.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_attr.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_bput.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_close.o): relocation R_X86_64_32 against symbol `ompi_mpi_info_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_create.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_dim.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_file_io.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_filetype.o): relocation R_X86_64_32S against symbol `ompi_mpi_byte' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_hash_func.o): relocation R_X86_64_32S against `.rodata' can not be used when making a PIE object; recompile with -fPIE collect2: error: ld returned 1 exit status make[4]: *** [Makefile:725: flash_benchmark_io] Error 1 make[4]: Leaving directory '/<>/build-static/benchmarks/FLASH-IO' make[3]: *** [Makefile:478: all-recursive] Error 1 make[3]: Leaving directory '/<>/build-static/benchmarks' make[2]: *** [Makefile:528: all-recursive] Error 1 make[2]: Leaving directory '/<>/build-static' make[1]: *** [debian/rules:54: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:33: build] Error 2 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-10-29T18:26:00Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 147564 Build-Time: 253 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 27 Job: pnetcdf_1.12.1-3 Machine Architecture: amd64 Package: pnetcdf Package-Time: 298 Source-Version: 1.12.1-3 Space: 147564 Status: attempted Version: 1.12.1-3 -------------------------------------------------------------------------------- Finished at 2020-10-29T18:26:00Z Build needed 00:04:58, 147564k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 298.897852802s DC-Time-Estimation: 298.897852802 versus expected 1068 (r/m: 2.57312703985023 ; m: 298.897852802)