DC-Build-Header: wtdbg2 2.5-7 / 2020-10-29 19:34:16 +0000 DC-Task: type:rebuild-binarch-only source:wtdbg2 version:2.5-7 chroot:unstable esttime:216 logfile:/tmp/wtdbg2_2.5-7_unstable_clang11.log modes:clang11:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang11 wtdbg2_2.5-7' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-4-172.eu-central-1.compute.internal +==============================================================================+ | wtdbg2 2.5-7 (amd64) Thu, 29 Oct 2020 19:34:16 +0000 | +==============================================================================+ Package: wtdbg2 Version: 2.5-7 Source Version: 2.5-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-d78293c4-6a00-46cd-bd61-8b0a7015db9d' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang11 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=10 + echo 'Install of clang-10' Install of clang-10 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [146 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [734 B] Ign:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [734 B] Ign:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index Get:4 http://127.0.0.1:12990/debian sid/main Translation-en [6391 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources [8989 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 Packages [8492 kB] Fetched 24.0 MB in 3s (7034 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-10 libomp-10-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc4 libomp5-10 libz3-4 Suggested packages: clang-10-doc libomp-10-doc Recommended packages: llvm-10-dev python3 The following NEW packages will be installed: clang-10 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-10-dev libclang-cpp10 libclang1-10 libedit2 libgc1 libgcc-9-dev libllvm10 libobjc-10-dev libobjc-9-dev libobjc4 libomp-10-dev libomp5-10 libz3-4 0 upgraded, 19 newly installed, 0 to remove and 1 not upgraded. Need to get 52.3 MB of archives. After this operation, 274 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libllvm10 amd64 1:10.0.1-7 [16.6 MB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp10 amd64 1:10.0.1-7 [9069 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-2.1 [239 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10.2.0-15 [41.6 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libobjc-10-dev amd64 10.2.0-15 [170 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.31-4 [2815 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10.2.0-15 [49.4 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10.2.0-15 [511 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-10-dev amd64 1:10.0.1-7 [5062 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libclang1-10 amd64 1:10.0.1-7 [7293 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 clang-10 amd64 1:10.0.1-7 [106 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.3.0-18 [390 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.3.0-18 [2347 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.3.0-18 [220 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libomp5-10 amd64 1:10.0.1-7 [339 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libomp-10-dev amd64 1:10.0.1-7 [86.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.3 MB in 0s (142 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12312 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20191231-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../02-libz3-4_4.8.9-1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.9-1) ... Selecting previously unselected package libllvm10:amd64. Preparing to unpack .../03-libllvm10_1%3a10.0.1-7_amd64.deb ... Unpacking libllvm10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libclang-cpp10. Preparing to unpack .../04-libclang-cpp10_1%3a10.0.1-7_amd64.deb ... Unpacking libclang-cpp10 (1:10.0.1-7) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../05-libgc1_1%3a8.0.4-2.1_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-2.1) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../06-libobjc4_10.2.0-15_amd64.deb ... Unpacking libobjc4:amd64 (10.2.0-15) ... Selecting previously unselected package libobjc-10-dev:amd64. Preparing to unpack .../07-libobjc-10-dev_10.2.0-15_amd64.deb ... Unpacking libobjc-10-dev:amd64 (10.2.0-15) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../08-libc6-i386_2.31-4_amd64.deb ... 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Unpacking libasan5:amd64 (9.3.0-18) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../15-libgcc-9-dev_9.3.0-18_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../16-libobjc-9-dev_9.3.0-18_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.3.0-18) ... Selecting previously unselected package libomp5-10:amd64. Preparing to unpack .../17-libomp5-10_1%3a10.0.1-7_amd64.deb ... Unpacking libomp5-10:amd64 (1:10.0.1-7) ... Selecting previously unselected package libomp-10-dev. Preparing to unpack .../18-libomp-10-dev_1%3a10.0.1-7_amd64.deb ... Unpacking libomp-10-dev (1:10.0.1-7) ... Setting up libasan5:amd64 (9.3.0-18) ... Setting up libz3-4:amd64 (4.8.9-1) ... Setting up libgc1:amd64 (1:8.0.4-2.1) ... Setting up libomp5-10:amd64 (1:10.0.1-7) ... Setting up libc6-i386 (2.31-4) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libomp-10-dev (1:10.0.1-7) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libobjc4:amd64 (10.2.0-15) ... Setting up libllvm10:amd64 (1:10.0.1-7) ... Setting up libgcc-9-dev:amd64 (9.3.0-18) ... Setting up lib32gcc-s1 (10.2.0-15) ... Setting up lib32stdc++6 (10.2.0-15) ... Setting up libclang1-10 (1:10.0.1-7) ... Setting up libobjc-9-dev:amd64 (9.3.0-18) ... Setting up libobjc-10-dev:amd64 (10.2.0-15) ... Setting up libclang-common-10-dev (1:10.0.1-7) ... Setting up libclang-cpp10 (1:10.0.1-7) ... Setting up clang-10 (1:10.0.1-7) ... Processing triggers for libc-bin (2.31-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-10 g++-4.6 + ln -s clang-10 gcc-4.6 + ln -s clang-10 cpp-4.6 + ln -s clang-10 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-10 g++-4.7 + ln -s clang-10 gcc-4.7 + ln -s clang-10 cpp-4.7 + ln -s clang-10 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-10 g++-4.8 + ln -s clang-10 gcc-4.8 + ln -s clang-10 cpp-4.8 + ln -s clang-10 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-10 g++-4.9 + ln -s clang-10 gcc-4.9 + ln -s clang-10 cpp-4.9 + ln -s clang-10 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-10 g++-5 + ln -s clang-10 gcc-5 + ln -s clang-10 cpp-5 + ln -s clang-10 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-10 g++-6 + ln -s clang-10 gcc-6 + ln -s clang-10 cpp-6 + ln -s clang-10 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-10 g++-7 + ln -s clang-10 gcc-7 + ln -s clang-10 cpp-7 + ln -s clang-10 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-10 g++-8 + ln -s clang-10 gcc-8 + ln -s clang-10 cpp-8 + ln -s clang-10 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-10 g++-9 + ln -s clang-10 gcc-9 + ln -s clang-10 cpp-9 + ln -s clang-10 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-10 g++-10 + ln -s clang-10 gcc-10 + ln -s clang-10 cpp-10 + ln -s clang-10 gcc + echo 'gcc-10 hold' + dpkg --set-selections + echo 'g++-10 hold' + dpkg --set-selections + cd - /build/wtdbg2-CNDobO + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-10 clang++ + ln -s clang-10 clang + clang++ --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 10.0.1-7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/wtdbg2-CNDobO + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 1 not upgraded. Need to get 1304 kB of archives. After this operation, 4865 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.14.2+dfsg-6 [1035 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.14.2+dfsg-6 [242 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1304 kB in 0s (56.3 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13315 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake-bin (5.14.2+dfsg-6) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.14.2+dfsg-6_amd64.deb ... Unpacking qt5-qmake:amd64 (5.14.2+dfsg-6) ... Setting up qt5-qmake-bin (5.14.2+dfsg-6) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.14.2+dfsg-6) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 29 19:34 . drwxr-xr-x 76 root root 4096 Oct 29 19:34 .. -rw-r--r-- 1 root root 276 Oct 29 19:34 qmake.conf -rw-r--r-- 1 root root 3218 Oct 29 19:34 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang11'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/wtdbg2-CNDobO/resolver-VwxH1M' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libdebconfclient0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 49.6 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libdebconfclient0 amd64 0.255 [49.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.6 kB in 0s (3415 kB/s) (Reading database ... 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Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'wtdbg2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/wtdbg2.git Please use: git clone https://salsa.debian.org/med-team/wtdbg2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 121 MB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main wtdbg2 2.5-7 (dsc) [2079 B] Get:2 http://127.0.0.1:12990/debian sid/main wtdbg2 2.5-7 (tar) [237 kB] Get:3 http://127.0.0.1:12990/debian sid/main wtdbg2 2.5-7 (diff) [121 MB] Fetched 121 MB in 1s (121 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/wtdbg2-CNDobO/wtdbg2-2.5' with '<>' I: NOTICE: Log filtering will replace 'build/wtdbg2-CNDobO' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [386 B] Get:5 copy:/<>/apt_archive ./ Packages [468 B] Fetched 1811 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsimde-dev libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsimde-dev libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 20.0 MB of archives. After this operation, 75.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.2-4 [801 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-14 [513 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.66.1-2 [1362 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-6.1 [692 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13.2.1 [1007 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libsimde-dev all 0.6.0-3 [213 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.0 MB in 0s (141 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14056 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... 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Setting up bsdextrautils (2.36-3+b1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.66.1-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (13.2.1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2 dpkg-dev_1.20.5 g++-10_10.2.0-15 gcc-10_10.2.0-15 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-15 libstdc++6_10.2.0-15 linux-libc-dev_5.9.1-1 Package versions: adduser_3.118 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc1-2 binutils_2.35.1-2 binutils-common_2.35.1-2 binutils-x86-64-linux-gnu_2.35.1-2 bsdextrautils_2.36-3+b1 bsdutils_1:2.36-3+b1 build-essential_12.8 bzip2_1.0.8-4 clang-10_1:10.0.1-7 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-15 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.0-15 gcc_4:10.2.0-1 gcc-10_10.2.0-15 gcc-10-base_10.2.0-15 gcc-9-base_9.3.0-18 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10.2.0-15 lib32stdc++6_10.2.0-15 libacl1_2.2.53-8 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan5_9.3.0-18 libasan6_10.2.0-15 libatomic1_10.2.0-15 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2 libblkid1_2.36-3+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4 libc-dev-bin_2.31-4 libc6_2.31-4 libc6-dev_2.31-4 libc6-i386_2.31-4 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-15 libclang-common-10-dev_1:10.0.1-7 libclang-cpp10_1:10.0.1-7 libclang1-10_1:10.0.1-7 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2 libctf0_2.35.1-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5 libedit2_3.1-20191231-1 libelf1_0.181-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgc1_1:8.0.4-2.1 libgcc-10-dev_10.2.0-15 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-15 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-15 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libitm1_10.2.0-15 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libllvm10_1:10.0.1-7 liblsan0_10.2.0-15 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3+b1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libnettle8_3.6-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libobjc-10-dev_10.2.0-15 libobjc-9-dev_9.3.0-18 libobjc4_10.2.0-15 libomp-10-dev_1:10.0.1-7 libomp5-10_1:10.0.1-7 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libquadmath0_10.2.0-15 libseccomp2_2.4.4-1+b1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsimde-dev_0.6.0-3 libsmartcols1_2.36-3+b1 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-15 libstdc++6_10.2.0-15 libsub-override-perl_0.09-2 libsystemd0_246.6-2 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-15 libubsan1_10.2.0-15 libuchardet0_0.0.7-1 libudev1_246.6-2 libunistring2_0.9.10-4 libuuid1_2.36-3+b1 libxml2_2.9.10+dfsg-6.1 libz3-4_4.8.9-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.9.1-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3+b1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 qt5-qmake_5.14.2+dfsg-6 qt5-qmake-bin_5.14.2+dfsg-6 qtchooser_66-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3+b1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: wtdbg2 Binary: wtdbg2, wtdbg2-examples Architecture: any all Version: 2.5-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/ruanjue/wtdbg2 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/wtdbg2 Vcs-Git: https://salsa.debian.org/med-team/wtdbg2.git Testsuite: autopkgtest Testsuite-Triggers: bwa, minimap2, samtools Build-Depends: debhelper-compat (= 13), zlib1g-dev, libsimde-dev Package-List: wtdbg2 deb science optional arch=any wtdbg2-examples deb science optional arch=all Checksums-Sha1: 36e07424e7a08b2571ea8580e50e736c90458335 236627 wtdbg2_2.5.orig.tar.gz 2da3c398645d51cb9a3175f47d4d3cef273d8dce 121142812 wtdbg2_2.5-7.debian.tar.xz Checksums-Sha256: a2ffc8503d29f491a9a38ef63230d5b3c96db78377b5d25c91df511d0df06413 236627 wtdbg2_2.5.orig.tar.gz 755e2d3cb633deb5eeee647edfe0539308952b25d7583fd55f953710f6d0bc37 121142812 wtdbg2_2.5-7.debian.tar.xz Files: 0368caed7480192c42b1a4ffa1ddbb7c 236627 wtdbg2_2.5.orig.tar.gz 2fb70b48a1f4e0505c2a3ccb37ce2511 121142812 wtdbg2_2.5-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl9QwqoUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHicA/1HBP38fMRxMWPw/JGulJTN8XvvXay 5A+ghtjA3ZoF25r5KL9R9Bw1PRRH+IkLbbyKEd+eMZI4KybpFh0SaxJjCckzpmOa hyC0GHhLqQOwTHv2BuBLwE2eV3Y0Y1gQlTgMmigM1panOgiZaAk4jgGPaxlZjAie aTiBQ942EScPaMxHS3aaZOeG9/W6L6WoG0JC/HSncnyfL9zJAGNfe7NI/J1XRITF QPL2OtvWe2G1LLfYDIRTH4cLKIUDaCdRidRaZUKipuXKeUkwAgIRceq4B2o/3sFq kraD5uRCYRFaEo+MaTxTbxOm/bS/uYPAbcTmSkHr4lXiqbUCepoMADXIQghXA+ks P0MIRGzNvHVyeOKvDTtMfDn6oLfsILfwf/C5FOJ1YvYRFlrTHvxQCo6hNpI7YT5O geraGvfcopDYE1BoNHxgv+H5JN7johx9rnmlKqkSZ3eUTJmfefpwHNzGpLQ5Rfzs 7HQuaALkRhXp/MA3BKFsDemrpFWPvNEuM5eEn61RExKIw1Y3/JsmxEEEJEqPIl1h fwDXE+Bd118Lurm8XJ16SU3UOfDsZ9SaY7hFTkmulr245R0tn+MJn07l4eik1GhB PSs5ewq6EjgQ9Dnn6DETT3Fk/gwA8UtDKNLYDpXqgf6bsFq6nY5J4IDYANAQv58H +Ad2/9a9IMsSfg== =TtLZ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.lxuyn30U/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 3 10:17:14 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./wtdbg2_2.5-7.dsc dpkg-source: info: extracting wtdbg2 in /<> dpkg-source: info: unpacking wtdbg2_2.5.orig.tar.gz dpkg-source: info: unpacking wtdbg2_2.5-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde dpkg-source: info: applying scripts-tweak Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-d78293c4-6a00-46cd-bd61-8b0a7015db9d SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package wtdbg2 dpkg-buildpackage: info: source version 2.5-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[1]: Leaving directory '/<>' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' sed -i 's/\/usr\/bin\/env perl/\/usr\/bin\/perl/' scripts/* sed -i 's/memeory/memory/' *.c *.h *.md sed -i 's/automaticly/automatically/' *.c sed -i 's/ouput/output/' *.c sed -i 's/vaule/value/' *.c sed -i 's/annonymous/anonymous/' *.h mkdir -p /<>/debian/wtdbg2/usr mkdir -p /<>/debian/wtdbg2/usr/lib/wtdbg2 for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ export CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -m${SIMD}" ; \ make clean ; \ dh_auto_build -- SFX=-${SIMD} ; \ done make[2]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/<>' make -j4 "INSTALL=install --strip-program=true" SFX=-avx2 make[2]: Entering directory '/<>' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-avx2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-avx2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-avx2 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-avx2 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: : warning: warning-O4 is equivalent to -O3 [-Wdeprecated]: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] : warning: clang: -O4 is equivalent to -O3 [-Wdeprecated]warning : -O4 is equivalent to -O3 [-Wdeprecated] : warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] warningwarningwarning: : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option]unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] In file included from In file included from wtpoa-cns.c:20: In file included from In file included from ./wtpoa.h:wtdbg-cns.c23:: In file included from 20./tripoa.h: :In file included from 23./kswx.h: :In file included from 24./poacns.h: :In file included from 23./dna.h: :In file included from 27./bit2vec.h: :In file included from 27: ./list.h:./mem_share.h28:: 514./mem_share.h::5514:: 5:warning : warningignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg.c:20: ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed);In file included from ./wtdbg.h:23: In file included from ./kbm.h:23 fscanf(fp, "%llu", &freed);: In file included from ^~~~~~ ~~~~~~~~~~~~~~~~~~./list.h :28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal);./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 5: fscanf(fp, "%llu", &cached); warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ ./mem_share.h:521:5:./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ :521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2:kbm.c:20: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal);./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h: 560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:517:5: warning: ./mem_share.hignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]: 568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ./mem_share.h: ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ 560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); :1191:2: ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ./mem_share.hignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1193:2: warning: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194:2:./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1191./mem_share.h:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1192: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1192 fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2:./mem_share.h:./mem_share.h1193::12232::2 : warningwarning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h./mem_share.h :1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(mem_type, sizeof(size_t), 1, file);1194:2: fread(cnt, sizeof(size_t), 1, file);warning : ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(aux_data, sizeof(size_t), 1, file); ./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 1222: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2: warning./mem_share.h: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file);:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file);: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file);./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : warning./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ./mem_share.h ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1255:2./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : warning fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302 fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: function definition is not allowed here psort_array(regs->buffer, regs->size, rd_reg_t, ncpu, num_cmpgtxx((a.node << 30) | a.rid, (b.node << 30) | b.rid, a.beg, b.beg, b.end, a.end)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :21:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: function definition is not allowed here psort_array(nds->buffer, nds->size, rnk_ref_t, ncpu, num_cmpgtx(num_diff(a.cnt, gcov), num_diff(b.cnt, gcov), a.rank, b.rank)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :129:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: function definition is not allowed here psort_array(offs->buffer, offs->size, edge_off_t, ncpu, num_cmpgtx(a.idx, b.idx, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :32:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: function definition is not allowed here psort_array(g->erefs->buffer + 1, g->erefs->size - 1, edge_ref_t, ncpu, num_cmpgtx( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :140:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: function definition is not allowed here psort_array(g->frgs->buffer, g->frgs->size, frg_t, ncpu, num_cmpgt(b.length, a.length)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :262:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: function definition is not allowed here psort_array(lnks->buffer, lnks->size, lnk_t, ncpu, num_cmpgtx(a.key, b.key, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :187:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: function definition is not allowed here psort_array(g->lrefs->buffer + 1, g->lrefs->size - 1, edge_ref_t, ncpu, num_cmpgt( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :297:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ 30 warnings and 14 errors generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: *** [Makefile:31: wtdbg2-avx2] Error 1 make[2]: *** Waiting for unfinished jobs.... 25 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 29 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 30 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: Leaving directory '/<>' dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" SFX=-avx2 returned exit code 2 make[2]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/<>' make -j4 "INSTALL=install --strip-program=true" SFX=-avx make[2]: Entering directory '/<>' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-avx kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-avx wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-avx wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-avx wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: : warningwarning: : -O4 is equivalent to -O3 [-Wdeprecated]-O4 is equivalent to -O3 [-Wdeprecated] clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] : clang: warning: warning-O4 is equivalent to -O3 [-Wdeprecated]: -O4 is equivalent to -O3 [-Wdeprecated] : warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] warningwarning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: In file included from ./bit2vec.h:27: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from ./dna.h:27./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); : In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5: warning: In file included from ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.hIn file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :521:5 fscanf(fp, "%llu", memtotal);: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: kbm.c:20: ./mem_share.hIn file included from :./kbm.h517::235: :In file included from ./list.hwarning:: 28: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :521 fscanf(fp, "%llu", &freed);:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h fscanf(fp, "%llu", &buffered); ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); 568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ./mem_share.h ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); 1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h :./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); 1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1194:2: warning: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1192:ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1222:2 fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194:2:: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file);./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1223 fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2: warning./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1224 fread(mem_type, sizeof(size_t), 1, file);:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2:./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(cnt, sizeof(size_t), 1, file);1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :2: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257: fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:22: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :2 fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2:./mem_share.h warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(cnt, sizeof(size_t), 1, file);1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ./mem_share.h ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:./mem_share.h12551255::22:: warningwarning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1302:2./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : warning fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(aux_data, sizeof(size_t), 1, file); ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: function definition is not allowed here psort_array(regs->buffer, regs->size, rd_reg_t, ncpu, num_cmpgtxx((a.node << 30) | a.rid, (b.node << 30) | b.rid, a.beg, b.beg, b.end, a.end)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :21:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: function definition is not allowed here psort_array(nds->buffer, nds->size, rnk_ref_t, ncpu, num_cmpgtx(num_diff(a.cnt, gcov), num_diff(b.cnt, gcov), a.rank, b.rank)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :129:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: function definition is not allowed here psort_array(offs->buffer, offs->size, edge_off_t, ncpu, num_cmpgtx(a.idx, b.idx, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :32:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: function definition is not allowed here psort_array(g->erefs->buffer + 1, g->erefs->size - 1, edge_ref_t, ncpu, num_cmpgtx( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :140:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: function definition is not allowed here psort_array(g->frgs->buffer, g->frgs->size, frg_t, ncpu, num_cmpgt(b.length, a.length)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :262:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: function definition is not allowed here psort_array(lnks->buffer, lnks->size, lnk_t, ncpu, num_cmpgtx(a.key, b.key, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :187:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: function definition is not allowed here psort_array(g->lrefs->buffer + 1, g->lrefs->size - 1, edge_ref_t, ncpu, num_cmpgt( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :297:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ 30 warnings and 14 errors generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: *** [Makefile:31: wtdbg2-avx] Error 1 make[2]: *** Waiting for unfinished jobs.... 25 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 29 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 1 warning generated. 30 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: Leaving directory '/<>' dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" SFX=-avx returned exit code 2 make[2]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/<>' make -j4 "INSTALL=install --strip-program=true" SFX=-sse4.1 make[2]: Entering directory '/<>' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse4.1 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse4.1 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse4.1 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse4.1 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: : warning: -O4 is equivalent to -O3 [-Wdeprecated] warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: : -O4 is equivalent to -O3 [-Wdeprecated] warning: -O4 is equivalent to -O3 [-Wdeprecated] : warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] warningwarning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] In file included from In file included from kbm.c:20: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:In file included from 514:wtdbg-cns.c5::20 : warningIn file included from : ./kswx.h:ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]24 : In file included from ./dna.h:27: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal);./mem_share.h./mem_share.h::517517::55:: warningwarning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ :519:5./mem_share.h:517:5: warning: ./mem_share.hignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]: 521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h: fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: warning: wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: In file included from ./bit2vec.h:27: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal);./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 2: fscanf(fp, "%llu", &freed); warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &buffered); ./mem_share.h: ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 568:2./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); : warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1193./mem_share.h:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); 1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194: ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h./mem_share.h::12221222::22:: warningwarning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223:2:./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 fread(size, sizeof(size_t), 1, file);:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h :1225:2./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : warning fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h :1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255:2./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(size, sizeof(size_t), 1, file); warning: fread(cnt, sizeof(size_t), 1, file);ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:./mem_share.h1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1223 fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2: ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: fread(aux_data, sizeof(size_t), 1, file);ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file);:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1304./mem_share.h: fread(mem_type, sizeof(size_t), 1, file); 2 ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1302 fread(aux_data, sizeof(size_t), 1, file);./mem_share.h : ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~1257 :2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :2 fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : warning./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file);./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.hIn file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ :23: In file included from ./tripoa.h:23: In file included from ./poacns.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from kbm.c:20: In file included from wtdbg-cns.c:20: In file included from ./kswx.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: function definition is not allowed here psort_array(regs->buffer, regs->size, rd_reg_t, ncpu, num_cmpgtxx((a.node << 30) | a.rid, (b.node << 30) | b.rid, a.beg, b.beg, b.end, a.end)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :249:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: function definition is not allowed here psort_array(nds->buffer, nds->size, rnk_ref_t, ncpu, num_cmpgtx(num_diff(a.cnt, gcov), num_diff(b.cnt, gcov), a.rank, b.rank)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :357:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: function definition is not allowed here psort_array(offs->buffer, offs->size, edge_off_t, ncpu, num_cmpgtx(a.idx, b.idx, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :205:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: function definition is not allowed here psort_array(g->erefs->buffer + 1, g->erefs->size - 1, edge_ref_t, ncpu, num_cmpgtx( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :6:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: function definition is not allowed here psort_array(g->frgs->buffer, g->frgs->size, frg_t, ncpu, num_cmpgt(b.length, a.length)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :166:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: function definition is not allowed here psort_array(lnks->buffer, lnks->size, lnk_t, ncpu, num_cmpgtx(a.key, b.key, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :54:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: function definition is not allowed here psort_array(g->lrefs->buffer + 1, g->lrefs->size - 1, edge_ref_t, ncpu, num_cmpgt( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :164:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ 30 warnings and 14 errors generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: *** [Makefile:31: wtdbg2-sse4.1] Error 1 make[2]: *** Waiting for unfinished jobs.... 29 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 25 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 30 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: Leaving directory '/<>' dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" SFX=-sse4.1 returned exit code 2 make[2]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/<>' make -j4 "INSTALL=install --strip-program=true" SFX=-ssse3 make[2]: Entering directory '/<>' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-ssse3 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-ssse3 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-ssse3 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-ssse3 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: : warning: warning: -O4 is equivalent to -O3 [-Wdeprecated] -O4 is equivalent to -O3 [-Wdeprecated] clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: : warning: -O4 is equivalent to -O3 [-Wdeprecated] warning: -O4 is equivalent to -O3 [-Wdeprecated] : warning: -O4 is equivalent to -O3 [-Wdeprecated]clang : warning: -O4 is equivalent to -O3 [-Wdeprecated] warningwarningwarningwarning: : : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option]unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option]unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23In file included from kbm.c:20: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:517./mem_share.h:5: warning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] In file included from ./tripoa.h:23: In file included from ./poacns.h:23: In file included from ./bit2vec.h:27: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal); ./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :521 fscanf(fp, "%llu", &freed);:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24 fscanf(fp, "%llu", &cached);: In file included from ^~~~~~ ~~~~~~~~~~~~~~~~~~~./dna.h :27: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:517 fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ :5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:521 fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ :5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:519 fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ :5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ 2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ./mem_share.h: ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ 568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ 560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h::11911191::22:: warningwarning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h::11921193::22:: warningwarning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :./mem_share.h:1192:2: warning fread(aux_data, sizeof(size_t), 1, file);: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193: fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2: warning./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1194:2:./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1222:./mem_share.h:1222:2: ./mem_share.hwarning:: 1224ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]: 2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 2: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ./mem_share.h./mem_share.h::12251223::22:: warningwarning: : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1224:2: warning./mem_share.h: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1223 fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2: warning: ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1255:2./mem_share.h: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(size, sizeof(size_t), 1, file);1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1255 fread(aux_data, sizeof(size_t), 1, file);:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301 fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2: warning./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1304:2:./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning fread(mem_type, sizeof(size_t), 1, file);: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1301:2: warning: :1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ./mem_share.h:1194: ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2:./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); In file included from ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: ./bit2vec.h:46:6:./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kbm.c:20: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] In file included from wtpoa-cns.c: idx = idx; ~~~ ^ ~~~ 20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: function definition is not allowed here psort_array(regs->buffer, regs->size, rd_reg_t, ncpu, num_cmpgtxx((a.node << 30) | a.rid, (b.node << 30) | b.rid, a.beg, b.beg, b.end, a.end)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :249:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: function definition is not allowed here psort_array(nds->buffer, nds->size, rnk_ref_t, ncpu, num_cmpgtx(num_diff(a.cnt, gcov), num_diff(b.cnt, gcov), a.rank, b.rank)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :357:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: function definition is not allowed here psort_array(offs->buffer, offs->size, edge_off_t, ncpu, num_cmpgtx(a.idx, b.idx, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :205:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: function definition is not allowed here psort_array(g->erefs->buffer + 1, g->erefs->size - 1, edge_ref_t, ncpu, num_cmpgtx( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :6:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: function definition is not allowed here psort_array(g->frgs->buffer, g->frgs->size, frg_t, ncpu, num_cmpgt(b.length, a.length)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :166:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: function definition is not allowed here psort_array(lnks->buffer, lnks->size, lnk_t, ncpu, num_cmpgtx(a.key, b.key, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :54:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: function definition is not allowed here psort_array(g->lrefs->buffer + 1, g->lrefs->size - 1, edge_ref_t, ncpu, num_cmpgt( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :164:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ 30 warnings and 14 errors generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: *** [Makefile:31: wtdbg2-ssse3] Error 1 make[2]: *** Waiting for unfinished jobs.... 25 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 29 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 1 warning generated. 30 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: Leaving directory '/<>' dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" SFX=-ssse3 returned exit code 2 make[2]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/<>' make -j4 "INSTALL=install --strip-program=true" SFX=-sse3 make[2]: Entering directory '/<>' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse3 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse3 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse3 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse3 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: : warningwarning: : -O4 is equivalent to -O3 [-Wdeprecated]-O4 is equivalent to -O3 [-Wdeprecated] clang: warning: clang-O4 is equivalent to -O3 [-Wdeprecated]: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] : warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] warning: warningunknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option]warning : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] : unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option]warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: In file included from ./bit2vec.h:27: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ In file included from In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: In file included from ./dna.h:27: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &freed);In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ :519:5: warning./mem_share.h: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fscanf(fp, "%llu", &buffered);./mem_share.h: 517 ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~: 5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 519 fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ :5: warning./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ./mem_share.h:519:5: warning: fscanf(fp, "%llu", &cached);ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &buffered); ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ kbm.c:20: In file included from ./kbm.h:./mem_share.h23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h::517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :560 fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ :2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~ 560:2./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ : warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ :2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:./mem_share.h2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193:2: ./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: fread(mem_type, sizeof(size_t), 1, file);ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h: 1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194:2: warning./mem_share.h: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1191:2: warning: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h::1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1193:2: warning fread(size, sizeof(size_t), 1, file);: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1223: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2: warning./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1224:2: ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: fread(cnt, sizeof(size_t), 1, file);ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :2: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2: warning: ./mem_share.hignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1223:2: warning fread(cnt, sizeof(size_t), 1, file);: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2 ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1225:2: warning: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :2: fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :2: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1302:2:./mem_share.h warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1303 fread(mem_type, sizeof(size_t), 1, file);:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 2: fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ./mem_share.h: ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256:2./mem_share.h: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1302:2: warning: fread(mem_type, sizeof(size_t), 1, file);ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303: ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from kbm.c:20: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] In file included from ./kswx.h:24: static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:24: ./dna.h:488:122: In file included from warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] wtdbg.c:20static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ : In file included from ./wtdbg.h:23: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from In file included from kbm.c:20: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ wtdbg-cns.c:20: In file included from ./kswx.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: function definition is not allowed here psort_array(regs->buffer, regs->size, rd_reg_t, ncpu, num_cmpgtxx((a.node << 30) | a.rid, (b.node << 30) | b.rid, a.beg, b.beg, b.end, a.end)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :276:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: function definition is not allowed here psort_array(nds->buffer, nds->size, rnk_ref_t, ncpu, num_cmpgtx(num_diff(a.cnt, gcov), num_diff(b.cnt, gcov), a.rank, b.rank)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :21:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: function definition is not allowed here psort_array(offs->buffer, offs->size, edge_off_t, ncpu, num_cmpgtx(a.idx, b.idx, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :233:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: function definition is not allowed here psort_array(g->erefs->buffer + 1, g->erefs->size - 1, edge_ref_t, ncpu, num_cmpgtx( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :32:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: function definition is not allowed here psort_array(g->frgs->buffer, g->frgs->size, frg_t, ncpu, num_cmpgt(b.length, a.length)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :184:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: function definition is not allowed here psort_array(lnks->buffer, lnks->size, lnk_t, ncpu, num_cmpgtx(a.key, b.key, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :78:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: function definition is not allowed here psort_array(g->lrefs->buffer + 1, g->lrefs->size - 1, edge_ref_t, ncpu, num_cmpgt( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :188:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ 30 warnings and 14 errors generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: *** [Makefile:31: wtdbg2-sse3] Error 1 make[2]: *** Waiting for unfinished jobs.... 25 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 29 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 1 warning generated. 30 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: Leaving directory '/<>' dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" SFX=-sse3 returned exit code 2 make[2]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/<>' make -j4 "INSTALL=install --strip-program=true" SFX=-sse2 make[2]: Entering directory '/<>' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse2 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse2 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now clangclang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: : warning: -O4 is equivalent to -O3 [-Wdeprecated] warning: -O4 is equivalent to -O3 [-Wdeprecated] clangclang: : warning: -O4 is equivalent to -O3 [-Wdeprecated] clangwarning: : warning: -O4 is equivalent to -O3 [-Wdeprecated]-O4 is equivalent to -O3 [-Wdeprecated] : clangwarning: -O4 is equivalent to -O3 [-Wdeprecated] : warning: -O4 is equivalent to -O3 [-Wdeprecated] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:23: In file included from ./bit2vec.h:27: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); In file included from kbm.c:20: In file included from ./kbm.h:23: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5: ./mem_share.h:519 :5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered);./mem_share.h ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:521:5 : warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:./mem_share.h2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: In file included from ./dna.h:27: In file included from ./list.h:28: ./mem_share.h:514:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", memtotal); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:517:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &freed); ^~~~~~ ~~~~~~~~~~~~~~~~~~ ./mem_share.h:519:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &buffered); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:521:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%llu", &cached); ^~~~~~ ~~~~~~~~~~~~~~~~~~~ ./mem_share.h:560:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:568:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fp, "%lu%lu", &tmp, &tmp2); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ./mem_share.h:1191: ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2./mem_share.h: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1192:./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); 2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~./mem_share.h ./mem_share.h::1193./mem_share.h:2::1193 :2warning:: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1194 fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2: warning: ./mem_share.h:1193:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1222:2: warning: fread(cnt, sizeof(size_t), 1, file);ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file);./mem_share.h ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1194./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :2: fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ./mem_share.hignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(aux_data, sizeof(size_t), 1, file);1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1222:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); :1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225 ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 2: fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result]./mem_share.h :1256 fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1223:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ./mem_share.h:1255 fread(cnt, sizeof(size_t), 1, file);:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256: ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1257:2: ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1191:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302./mem_share.h:1192:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :2:./mem_share.h warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193:2: warning./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :1304:./mem_share.h:1194:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] 2: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1222:2./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1223:2: warning./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1224:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1225:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1255:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1256:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] In file included from fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wtpoa-cns.c./mem_share.h:1257:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :20 fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ : In file included from ./wtpoa.h./mem_share.h:1258:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :23: fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./tripoa.h:23: In file included from ./poacns.h:23: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ ./mem_share.h:1301:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1301:2./mem_share.h: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(size, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ :./mem_share.h1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] :1302:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fread(mem_type, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1303:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(cnt, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./mem_share.h:1304:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(aux_data, sizeof(size_t), 1, file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.hIn file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] :23: In file included from ./tripoa.h:23: In file included from static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ ./poacns.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:24: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:25: ./dna.h:488:122: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] static inline size_t basebank_obj_desc_cnt(void *obj, int idx){ return ((((BaseBank*)obj)->size + 31) / 32 + 1) * 8; idx = idx; } ~~~ ^ ~~~ In file included from In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: In file included from ./poacns.h:25: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg-cns.c:20: In file included from ./kswx.h:25: ./chararray.hIn file included from kbm.c:20: In file included from ./kbm.h:26: In file included from ./filereader.h:30: ./chararray.h:65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ :65:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:28: ./bitsvec.h:92:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:23: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from kbm.c:20: In file included from ./kbm.h:29: ./bit2vec.h:46:6: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] idx = idx; ~~~ ^ ~~~ In file included from wtpoa-cns.c:20: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtpoa-cns.c:20: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: In file included from ./wtpoa.h:23: In file included from ./tripoa.h:23: ./poacns.h:1743:11: warning: implicit conversion from 'int' to 'float' changes value from -1073741823 to -1073741824 [-Wimplicit-int-float-conversion] DP_MIN = - (MAX_B4 >> 1); ~ ^~~~~~~~~~~~~~~ In file included from kbm.c:21: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: In file included from ./wtdbg.h:24: In file included from ./kbmpoa.h:24: ./wtpoa.h:77:31: warning: too many arguments in call to 'init_basebank' ctg->seq = init_basebank(2048); ~~~~~~~~~~~~~ ^ ./wtpoa.h:78:31: warning: too many arguments in call to 'init_basebank' ctg->cns = init_basebank(2048); ~~~~~~~~~~~~~ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: function definition is not allowed here psort_array(regs->buffer, regs->size, rd_reg_t, ncpu, num_cmpgtxx((a.node << 30) | a.rid, (b.node << 30) | b.rid, a.beg, b.beg, b.end, a.end)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1755:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :276:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: function definition is not allowed here psort_array(nds->buffer, nds->size, rnk_ref_t, ncpu, num_cmpgtx(num_diff(a.cnt, gcov), num_diff(b.cnt, gcov), a.rank, b.rank)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:1800:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :21:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: function definition is not allowed here psort_array(offs->buffer, offs->size, edge_off_t, ncpu, num_cmpgtx(a.idx, b.idx, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2074:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :233:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: function definition is not allowed here psort_array(g->erefs->buffer + 1, g->erefs->size - 1, edge_ref_t, ncpu, num_cmpgtx( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:20: ./wtdbg.h:2112:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :32:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: function definition is not allowed here psort_array(g->frgs->buffer, g->frgs->size, frg_t, ncpu, num_cmpgt(b.length, a.length)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3571:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :184:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: function definition is not allowed here psort_array(lnks->buffer, lnks->size, lnk_t, ncpu, num_cmpgtx(a.key, b.key, a.off, b.off)); ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3803:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :78:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: function definition is not allowed here psort_array(g->lrefs->buffer + 1, g->lrefs->size - 1, edge_ref_t, ncpu, num_cmpgt( ^ ./sort.h:212:2: note: expanded from macro 'psort_array' thread_beg_func_inline(psrt); \ ^ ./thread.h:101:84: note: expanded from macro 'thread_beg_func_inline' #define thread_beg_func_inline(tname) inline void* thread_##tname##_func(void *obj){\ ^ In file included from wtdbg.c:21: ./wtdbg-graph.h:3867:2: error: use of undeclared identifier 'thread_psrt_func'; did you mean 'thread_pgz_func'? ./sort.h:235:2: note: expanded from macro 'psort_array' thread_end_init(psrt); \ ^ ./thread.h:183:53: note: expanded from macro 'thread_end_init' if(pthread_create(tname##_pids + tname##_i, NULL, thread_##tname##_func, (void*)tname) != 0){\ ^ :188:1: note: expanded from here thread_psrt_func ^ ./pgzf.h:316:1: note: 'thread_pgz_func' declared here thread_beg_func(pgz); ^ ./thread.h:100:32: note: expanded from macro 'thread_beg_func' #define thread_beg_func(tname) thread_begin_func(tname) ^ ./thread.h:99:41: note: expanded from macro 'thread_begin_func' #define thread_begin_func(tname) static thread_begin_func_core(tname) ^ ./thread.h:91:52: note: expanded from macro 'thread_begin_func_core' #define thread_begin_func_core(tname) inline void* thread_##tname##_func(void *obj){\ ^ :127:1: note: expanded from here thread_pgz_func ^ 30 warnings and 14 errors generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: *** [Makefile:31: wtdbg2-sse2] Error 1 make[2]: *** Waiting for unfinished jobs.... 29 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 25 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. 30 warnings generated. warning: unknown warning option '-Wno-unused-but-set-variable'; did you mean '-Wno-unused-const-variable'? [-Wunknown-warning-option] 1 warning generated. make[2]: Leaving directory '/<>' dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" SFX=-sse2 returned exit code 2 make[1]: *** [debian/rules:30: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:19: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-10-29T19:35:43Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 131396 Build-Time: 62 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 5 Job: wtdbg2_2.5-7 Machine Architecture: amd64 Package: wtdbg2 Package-Time: 87 Source-Version: 2.5-7 Space: 131396 Status: attempted Version: 2.5-7 -------------------------------------------------------------------------------- Finished at 2020-10-29T19:35:43Z Build needed 00:01:27, 131396k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 88.155880008s DC-Time-Estimation: 88.155880008 versus expected 216 (r/m: 1.4502052498415121 ; m: 88.155880008)