DC-Build-Header: gudhi 3.4.1+dfsg-2 / 2021-10-26 19:12:48 +0000 DC-Task: type:rebuild-binarch-only source:gudhi version:3.4.1+dfsg-2 chroot:unstable esttime:4031 logfile:/tmp/gudhi_3.4.1+dfsg-2_unstable_clang13.log modes:clang13:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang13 gudhi_3.4.1+dfsg-2' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-13-188.eu-central-1.compute.internal +==============================================================================+ | gudhi 3.4.1+dfsg-2 (amd64) Tue, 26 Oct 2021 19:12:48 +0000 | +==============================================================================+ Package: gudhi Version: 3.4.1+dfsg-2 Source Version: 3.4.1+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-06da09d2-98b5-4dac-9f0a-0fa3a141a70c' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang13 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=13 + echo 'Install of clang-13' Install of clang-13 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [165 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [34.5 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [34.5 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [38.7 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [38.7 kB] Get:6 http://127.0.0.1:12990/debian sid/main Translation-en [6585 kB] Fetched 6951 kB in 3s (2750 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-13 libomp-13-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc4 libomp5-13 libxml2 libz3-4 Suggested packages: clang-13-doc libomp-13-doc Recommended packages: llvm-13-dev python3 The following NEW packages will be installed: clang-13 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc-9-dev libobjc4 libomp-13-dev libomp5-13 libxml2 libz3-4 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 68.5 MB of archives. After this operation, 379 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libllvm13 amd64 1:13.0.0-8 [19.7 MB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp13 amd64 1:13.0.0-8 [10.5 MB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-3 [239 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 11.2.0-10 [43.2 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libobjc-11-dev amd64 11.2.0-10 [170 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.32-4 [2624 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 11.2.0-10 [49.9 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 11.2.0-10 [601 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-13-dev amd64 1:13.0.0-8 [5730 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libclang1-13 amd64 1:13.0.0-8 [6093 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 clang-13 amd64 1:13.0.0-8 [119 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.4.0-3 [2734 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.4.0-3 [2343 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.4.0-3 [219 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libomp5-13 amd64 1:13.0.0-8 [377 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libomp-13-dev amd64 1:13.0.0-8 [482 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.5 MB in 0s (155 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12431 files and directories currently installed.) Preparing to unpack .../00-libmd0_1.0.4-1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20210910-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../03-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../04-libxml2_2.9.12+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-5) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../05-libz3-4_4.8.12-1+b1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-1+b1) ... Selecting previously unselected package libllvm13:amd64. Preparing to unpack .../06-libllvm13_1%3a13.0.0-8_amd64.deb ... Unpacking libllvm13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libclang-cpp13. Preparing to unpack .../07-libclang-cpp13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-cpp13 (1:13.0.0-8) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../08-libgc1_1%3a8.0.4-3_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../09-libobjc4_11.2.0-10_amd64.deb ... Unpacking libobjc4:amd64 (11.2.0-10) ... Selecting previously unselected package libobjc-11-dev:amd64. Preparing to unpack .../10-libobjc-11-dev_11.2.0-10_amd64.deb ... Unpacking libobjc-11-dev:amd64 (11.2.0-10) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../11-libc6-i386_2.32-4_amd64.deb ... Unpacking libc6-i386 (2.32-4) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../12-lib32gcc-s1_11.2.0-10_amd64.deb ... Unpacking lib32gcc-s1 (11.2.0-10) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../13-lib32stdc++6_11.2.0-10_amd64.deb ... Unpacking lib32stdc++6 (11.2.0-10) ... Selecting previously unselected package libclang-common-13-dev. Preparing to unpack .../14-libclang-common-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-common-13-dev (1:13.0.0-8) ... Selecting previously unselected package libclang1-13. Preparing to unpack .../15-libclang1-13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang1-13 (1:13.0.0-8) ... Selecting previously unselected package clang-13. Preparing to unpack .../16-clang-13_1%3a13.0.0-8_amd64.deb ... Unpacking clang-13 (1:13.0.0-8) ... Selecting previously unselected package libasan5:amd64. Preparing to unpack .../17-libasan5_9.4.0-3_amd64.deb ... Unpacking libasan5:amd64 (9.4.0-3) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../18-libgcc-9-dev_9.4.0-3_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../19-libobjc-9-dev_9.4.0-3_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libomp5-13:amd64. Preparing to unpack .../20-libomp5-13_1%3a13.0.0-8_amd64.deb ... Unpacking libomp5-13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libomp-13-dev. Preparing to unpack .../21-libomp-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libomp-13-dev (1:13.0.0-8) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libasan5:amd64 (9.4.0-3) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up libgc1:amd64 (1:8.0.4-3) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libc6-i386 (2.32-4) ... Setting up libomp5-13:amd64 (1:13.0.0-8) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libobjc4:amd64 (11.2.0-10) ... Setting up libgcc-9-dev:amd64 (9.4.0-3) ... Setting up lib32gcc-s1 (11.2.0-10) ... Setting up lib32stdc++6 (11.2.0-10) ... Setting up libllvm13:amd64 (1:13.0.0-8) ... Setting up libobjc-9-dev:amd64 (9.4.0-3) ... Setting up libclang-common-13-dev (1:13.0.0-8) ... Setting up libomp-13-dev (1:13.0.0-8) ... Setting up libobjc-11-dev:amd64 (11.2.0-10) ... Setting up libclang1-13 (1:13.0.0-8) ... Setting up libclang-cpp13 (1:13.0.0-8) ... Setting up clang-13 (1:13.0.0-8) ... Processing triggers for libc-bin (2.32-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10 11' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-13 g++-4.6 + ln -s clang-13 gcc-4.6 + ln -s clang-13 cpp-4.6 + ln -s clang-13 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-13 g++-4.7 + ln -s clang-13 gcc-4.7 + ln -s clang-13 cpp-4.7 + ln -s clang-13 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-13 g++-4.8 + ln -s clang-13 gcc-4.8 + ln -s clang-13 cpp-4.8 + ln -s clang-13 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-13 g++-4.9 + ln -s clang-13 gcc-4.9 + ln -s clang-13 cpp-4.9 + ln -s clang-13 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-13 g++-5 + ln -s clang-13 gcc-5 + ln -s clang-13 cpp-5 + ln -s clang-13 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-13 g++-6 + ln -s clang-13 gcc-6 + ln -s clang-13 cpp-6 + ln -s clang-13 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-13 g++-7 + ln -s clang-13 gcc-7 + ln -s clang-13 cpp-7 + ln -s clang-13 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-13 g++-8 + ln -s clang-13 gcc-8 + ln -s clang-13 cpp-8 + ln -s clang-13 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-13 g++-9 + ln -s clang-13 gcc-9 + ln -s clang-13 cpp-9 + ln -s clang-13 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-13 g++-10 + ln -s clang-13 gcc-10 + ln -s clang-13 cpp-10 + ln -s clang-13 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-11 gcc-11 cpp-11 gcc + ln -s clang++-13 g++-11 + ln -s clang-13 gcc-11 + ln -s clang-13 cpp-11 + ln -s clang-13 gcc + echo 'gcc-11 hold' + dpkg --set-selections + echo 'g++-11 hold' + dpkg --set-selections + cd - /build/gudhi-oNJc80 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-13 clang++ + ln -s clang-13 clang + clang++ --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/gudhi-oNJc80 + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 1322 kB of archives. After this operation, 4914 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.15.2+dfsg-12 [1046 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.15.2+dfsg-12 [249 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1322 kB in 0s (56.6 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13528 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake-bin (5.15.2+dfsg-12) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake:amd64 (5.15.2+dfsg-12) ... Setting up qt5-qmake-bin (5.15.2+dfsg-12) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.15.2+dfsg-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 26 19:13 . drwxr-xr-x 76 root root 4096 Oct 26 19:13 .. -rw-r--r-- 1 root root 276 Oct 26 19:13 qmake.conf -rw-r--r-- 1 root root 3218 Oct 26 19:13 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang13'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/gudhi-oNJc80/resolver-idI0jR' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gudhi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/gspr/gudhi.git -b debian/sid Please use: git clone https://salsa.debian.org/gspr/gudhi.git -b debian/sid to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.9 MB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main gudhi 3.4.1+dfsg-2 (dsc) [3191 B] Get:2 http://127.0.0.1:12990/debian sid/main gudhi 3.4.1+dfsg-2 (tar) [21.9 MB] Get:3 http://127.0.0.1:12990/debian sid/main gudhi 3.4.1+dfsg-2 (diff) [11.2 kB] Fetched 21.9 MB in 0s (113 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gudhi-oNJc80/gudhi-3.4.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gudhi-oNJc80' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cmake (>= 3.5), cython3, debhelper-compat (= 13), dh-python, libboost-filesystem-dev (>= 1.56), libboost-program-options-dev (>= 1.56), libboost-system-dev (>= 1.56), libboost-test-dev (>= 1.56), libboost-thread-dev (>= 1.56), libboost-timer-dev (>= 1.56), libcgal-dev (>= 5.0), libcgal-qt5-dev (>> 4.11.0), libeigen3-dev, libgmp-dev, libhera-dev, libqglviewer-dev-qt5, libtbb-dev, pybind11-dev, python3-all-dev, python3-eagerpy, python3-matplotlib, python3-numpy, python3-pot, python3-pybind11, python3-pytest, python3-scipy, python3-setuptools, python3-sklearn, python3-tk, qtbase5-dev, build-essential, fakeroot, doxygen, graphviz Filtered Build-Depends: cmake (>= 3.5), cython3, debhelper-compat (= 13), dh-python, libboost-filesystem-dev (>= 1.56), libboost-program-options-dev (>= 1.56), libboost-system-dev (>= 1.56), libboost-test-dev (>= 1.56), libboost-thread-dev (>= 1.56), libboost-timer-dev (>= 1.56), libcgal-dev (>= 5.0), libcgal-qt5-dev (>> 4.11.0), libeigen3-dev, libgmp-dev, libhera-dev, libqglviewer-dev-qt5, libtbb-dev, pybind11-dev, python3-all-dev, python3-eagerpy, python3-matplotlib, python3-numpy, python3-pot, python3-pybind11, python3-pytest, python3-scipy, python3-setuptools, python3-sklearn, python3-tk, qtbase5-dev, build-essential, fakeroot, doxygen, graphviz dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [593 B] Get:5 copy:/<>/apt_archive ./ Packages [670 B] Fetched 2226 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils cmake cmake-data cython3 debhelper dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism doxygen dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost-test-dev libboost-test1.74-dev libboost-test1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost-timer-dev libboost-timer1.74-dev libboost-timer1.74.0 libboost1.74-dev libbrotli1 libcairo2 libcdt5 libcgal-dev libcgal-qt5-dev libcgraph6 libclang-cpp11 libclang1-11 libcups2 libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-10-dev libgd3 libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgraphite2-3 libgts-0.7-5 libgudev-1.0-0 libgvc6 libgvpr2 libharfbuzz0b libhera-dev libice-dev libice6 libimagequant0 libinput-bin libinput10 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp24 liblab-gamut1 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libllvm11 libllvm12 libltdl7 libmagic-mgc libmagic1 libmd4c0 libmpdec3 libmpfr-dev libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpciaccess0 libpcre2-16-0 libphat-dev libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpthread-stubs0-dev libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqglviewer-dev-qt5 libqglviewer-headers libqglviewer2-qt5 libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5printsupport5 libqt5sql5 libqt5svg5 libqt5svg5-dev libqt5test5 libqt5widgets5 libqt5xml5 libraqm0 libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssh2-1 libstdc++-10-dev libsub-override-perl libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libvulkan-dev libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxkbcommon-x11-0 libxkbcommon0 libxmu-dev libxmu-headers libxmu6 libxpm4 libxrender1 libxshmfence1 libxss1 libxt-dev libxt6 libxxf86vm1 m4 mailcap man-db media-types mime-support pkg-config po-debconf procps pybind11-dev python-matplotlib-data python3 python3-all python3-all-dev python3-attr python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-eagerpy python3-importlib-metadata python3-iniconfig python3-joblib python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pil python3-pkg-resources python3-pluggy python3-pot python3-py python3-pybind11 python3-pyparsing python3-pytest python3-scipy python3-setuptools python3-six python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-tk python3-toml python3-typing-extensions python3-zipp python3.9 python3.9-dev python3.9-minimal qtbase5-dev qtbase5-dev-tools readline-common sensible-utils shared-mime-info tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo cmake-doc ninja-build cython-doc dh-make flit doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc libboost1.74-doc libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-stacktrace1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libmpfi-dev cups-common libeigen3-doc libgd-tools gmp-doc libgmp10-doc libice-doc libjs-jquery-ui-docs liblcms2-utils libmpfr-doc pciutils phat-utils qt5-image-formats-plugins qtwayland5 lm-sensors libsm-doc libstdc++-10-doc libtbb-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc xapian-tools libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser libmail-box-perl pybind11-doc python3-doc python3-venv python-attr-doc python-cycler-doc python3-torch dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gfortran python-numpy-doc python3-numpy-dbg python-pil-doc subversion python-pyparsing-doc python-scipy-doc python-setuptools-doc python3-dap python-sklearn-doc tix python3-tk-dbg python3.9-venv python3.9-doc binfmt-support default-libmysqlclient-dev firebird-dev libpq-dev libsqlite3-dev unixodbc-dev readline-doc Recommended packages: curl | wget | lynx fonts-liberation ca-certificates dbus libarchive-cpio-perl libglib2.0-data xdg-user-dirs libgts-bin javascript-common libldap-common libgpm2 publicsuffix qttranslations5-l10n qt5-gtk-platformtheme libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libwacom-bin libmail-sendmail-perl psmisc python3-simplejson python3-psutil python3-olefile python3-pygments python3-nose The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils cmake cmake-data cython3 debhelper dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism doxygen dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost-test-dev libboost-test1.74-dev libboost-test1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost-timer-dev libboost-timer1.74-dev libboost-timer1.74.0 libboost1.74-dev libbrotli1 libcairo2 libcdt5 libcgal-dev libcgal-qt5-dev libcgraph6 libclang-cpp11 libclang1-11 libcups2 libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-10-dev libgd3 libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgmp-dev libgmpxx4ldbl libgraphite2-3 libgts-0.7-5 libgudev-1.0-0 libgvc6 libgvpr2 libharfbuzz0b libhera-dev libice-dev libice6 libimagequant0 libinput-bin libinput10 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp24 liblab-gamut1 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libllvm11 libllvm12 libltdl7 libmagic-mgc libmagic1 libmd4c0 libmpdec3 libmpfr-dev libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpciaccess0 libpcre2-16-0 libphat-dev libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpthread-stubs0-dev libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqglviewer-dev-qt5 libqglviewer-headers libqglviewer2-qt5 libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5printsupport5 libqt5sql5 libqt5svg5 libqt5svg5-dev libqt5test5 libqt5widgets5 libqt5xml5 libraqm0 libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssh2-1 libstdc++-10-dev libsub-override-perl libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libvulkan-dev libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxkbcommon-x11-0 libxkbcommon0 libxmu-dev libxmu-headers libxmu6 libxpm4 libxrender1 libxshmfence1 libxss1 libxt-dev libxt6 libxxf86vm1 m4 mailcap man-db media-types mime-support pkg-config po-debconf procps pybind11-dev python-matplotlib-data python3 python3-all python3-all-dev python3-attr python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-eagerpy python3-importlib-metadata python3-iniconfig python3-joblib python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pil python3-pkg-resources python3-pluggy python3-pot python3-py python3-pybind11 python3-pyparsing python3-pytest python3-scipy python3-setuptools python3-six python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-tk python3-toml python3-typing-extensions python3-zipp python3.9 python3.9-dev python3.9-minimal qtbase5-dev qtbase5-dev-tools readline-common sbuild-build-depends-main-dummy sensible-utils shared-mime-info tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 332 newly installed, 0 to remove and 0 not upgraded. Need to get 207 MB of archives. After this operation, 1028 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1096 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdextrautils amd64 2.37.2-4 [143 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.70.0-3 [1401 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libdouble-conversion3 amd64 3.1.5-7 [40.1 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libpcre2-16-0 amd64 10.36-2 [231 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libqt5core5a amd64 5.15.2+dfsg-12 [1829 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.4.1-3 [104 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libfreetype6 amd64 2.11.0+dfsg-1 [453 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libdrm-common all 2.4.107-8 [15.3 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libdrm2 amd64 2.4.107-8 [44.0 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libglvnd0 amd64 1.3.4-2+b1 [51.7 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libwayland-server0 amd64 1.19.0-2+b1 [34.8 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libgbm1 amd64 21.2.4-1 [76.8 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libglapi-mesa amd64 21.2.4-1 [74.9 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libwayland-client0 amd64 1.19.0-2+b1 [27.3 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 libx11-data all 2:1.7.2-2 [311 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 libx11-6 amd64 2:1.7.2-2+b1 [772 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libx11-xcb1 amd64 2:1.7.2-2+b1 [203 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libegl-mesa0 amd64 21.2.4-1 [144 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 libegl1 amd64 1.3.4-2+b1 [35.4 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.107-8 [29.0 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 libdrm-intel1 amd64 2.4.107-8 [72.5 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.107-8 [27.3 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 libdrm-radeon1 amd64 2.4.107-8 [30.6 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 libllvm12 amd64 1:12.0.1-15 [19.4 MB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 libvulkan1 amd64 1.2.189.0-2 [104 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 libgl1-mesa-dri amd64 21.2.4-1 [10.3 MB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 libglx-mesa0 amd64 21.2.4-1 [184 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 libglx0 amd64 1.3.4-2+b1 [36.5 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 libgl1 amd64 1.3.4-2+b1 [89.6 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 libevdev2 amd64 1.11.0+dfsg-1 [34.0 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 libgudev-1.0-0 amd64 237-2 [15.1 kB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 libwacom-common all 1.11-1 [52.2 kB] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libwacom2 amd64 1.11-1 [22.3 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 libinput-bin amd64 1.19.1-1 [25.8 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 libinput10 amd64 1.19.1-1 [125 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 libdbus-1-3 amd64 1.12.20-3 [219 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 libqt5dbus5 amd64 5.15.2+dfsg-12 [240 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 libqt5network5 amd64 5.15.2+dfsg-12 [697 kB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:80 http://127.0.0.1:12990/debian sid/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 libxcb-image0 amd64 0.4.0-1+b3 [24.3 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libxcb-randr0 amd64 1.14-3 [113 kB] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:86 http://127.0.0.1:12990/debian sid/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:87 http://127.0.0.1:12990/debian sid/main amd64 libxcb-shape0 amd64 1.14-3 [102 kB] Get:88 http://127.0.0.1:12990/debian sid/main amd64 libxcb-xinerama0 amd64 1.14-3 [101 kB] Get:89 http://127.0.0.1:12990/debian sid/main amd64 libxcb-xinput0 amd64 1.14-3 [126 kB] Get:90 http://127.0.0.1:12990/debian sid/main amd64 libxcb-xkb1 amd64 1.14-3 [126 kB] Get:91 http://127.0.0.1:12990/debian sid/main amd64 xkb-data all 2.33-1 [748 kB] Get:92 http://127.0.0.1:12990/debian sid/main amd64 libxkbcommon0 amd64 1.3.1-1 [109 kB] Get:93 http://127.0.0.1:12990/debian sid/main amd64 libxkbcommon-x11-0 amd64 1.3.1-1 [17.5 kB] Get:94 http://127.0.0.1:12990/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:95 http://127.0.0.1:12990/debian sid/main amd64 libqt5gui5 amd64 5.15.2+dfsg-12 [3403 kB] Get:96 http://127.0.0.1:12990/debian sid/main amd64 libqt5widgets5 amd64 5.15.2+dfsg-12 [2393 kB] Get:97 http://127.0.0.1:12990/debian sid/main amd64 libqt5svg5 amd64 5.15.2-3 [132 kB] Get:98 http://127.0.0.1:12990/debian sid/main amd64 libqt5svg5-dev amd64 5.15.2-3 [15.9 kB] Get:99 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-minimal amd64 3.9.7-4 [804 kB] Get:100 http://127.0.0.1:12990/debian sid/main amd64 python3.9-minimal amd64 3.9.7-4 [1963 kB] Get:101 http://127.0.0.1:12990/debian sid/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:102 http://127.0.0.1:12990/debian sid/main amd64 media-types all 4.0.0 [30.3 kB] Get:103 http://127.0.0.1:12990/debian sid/main amd64 mailcap all 3.70 [31.8 kB] Get:104 http://127.0.0.1:12990/debian sid/main amd64 mime-support all 3.66 [10.9 kB] Get:105 http://127.0.0.1:12990/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:106 http://127.0.0.1:12990/debian sid/main amd64 libncursesw6 amd64 6.2+20210905-1 [133 kB] Get:107 http://127.0.0.1:12990/debian sid/main amd64 readline-common all 8.1-2 [73.8 kB] Get:108 http://127.0.0.1:12990/debian sid/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:109 http://127.0.0.1:12990/debian sid/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:110 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-stdlib amd64 3.9.7-4 [1688 kB] Get:111 http://127.0.0.1:12990/debian sid/main amd64 python3.9 amd64 3.9.7-4 [480 kB] Get:112 http://127.0.0.1:12990/debian sid/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:113 http://127.0.0.1:12990/debian sid/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:114 http://127.0.0.1:12990/debian sid/main amd64 libncurses6 amd64 6.2+20210905-1 [102 kB] Get:115 http://127.0.0.1:12990/debian sid/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:116 http://127.0.0.1:12990/debian sid/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:117 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:118 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:119 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:120 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:121 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:122 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:123 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:124 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:125 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.5-1 [823 kB] Get:126 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.21-4 [510 kB] Get:127 http://127.0.0.1:12990/debian sid/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:128 http://127.0.0.1:12990/debian sid/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:129 http://127.0.0.1:12990/debian sid/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:130 http://127.0.0.1:12990/debian sid/main amd64 libtk8.6 amd64 8.6.11.1-1 [779 kB] Get:131 http://127.0.0.1:12990/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:132 http://127.0.0.1:12990/debian sid/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:133 http://127.0.0.1:12990/debian sid/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get:134 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get:135 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get:136 http://127.0.0.1:12990/debian sid/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1 [232 kB] Get:137 http://127.0.0.1:12990/debian sid/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:138 http://127.0.0.1:12990/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:139 http://127.0.0.1:12990/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:140 http://127.0.0.1:12990/debian sid/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB] Get:141 http://127.0.0.1:12990/debian sid/main amd64 libcurl4 amd64 7.74.0-1.3+b1 [341 kB] Get:142 http://127.0.0.1:12990/debian sid/main amd64 libjsoncpp24 amd64 1.9.4-5 [78.8 kB] Get:143 http://127.0.0.1:12990/debian sid/main amd64 librhash0 amd64 1.4.2-1 [129 kB] Get:144 http://127.0.0.1:12990/debian sid/main amd64 libuv1 amd64 1.42.0-1 [135 kB] Get:145 http://127.0.0.1:12990/debian sid/main amd64 dh-elpa-helper all 2.0.9 [11.2 kB] Get:146 http://127.0.0.1:12990/debian sid/main amd64 emacsen-common all 3.0.4 [19.3 kB] Get:147 http://127.0.0.1:12990/debian sid/main amd64 cmake-data all 3.21.3-5 [1878 kB] Get:148 http://127.0.0.1:12990/debian sid/main amd64 cmake amd64 3.21.3-5 [7907 kB] Get:149 http://127.0.0.1:12990/debian sid/main amd64 cython3 amd64 0.29.24-1 [1314 kB] Get:150 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:151 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-15 [513 kB] Get:152 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:153 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:154 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:155 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB] Get:156 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.12.0-2 [15.5 kB] Get:157 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:158 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.21-4 [1311 kB] Get:159 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:160 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:161 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13.5.2 [1056 kB] Get:162 http://127.0.0.1:12990/debian sid/main amd64 python3-lib2to3 all 3.9.7-1 [79.4 kB] Get:163 http://127.0.0.1:12990/debian sid/main amd64 python3-distutils all 3.9.7-1 [146 kB] Get:164 http://127.0.0.1:12990/debian sid/main amd64 dh-python all 5.20211022.1 [103 kB] Get:165 http://127.0.0.1:12990/debian sid/main amd64 libllvm11 amd64 1:11.1.0-4 [17.9 MB] Get:166 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp11 amd64 1:11.1.0-4 [9662 kB] Get:167 http://127.0.0.1:12990/debian sid/main amd64 libclang1-11 amd64 1:11.1.0-4 [5522 kB] Get:168 http://127.0.0.1:12990/debian sid/main amd64 libxapian30 amd64 1.4.18-3 [1089 kB] Get:169 http://127.0.0.1:12990/debian sid/main amd64 doxygen amd64 1.9.1-2 [4234 kB] Get:170 http://127.0.0.1:12990/debian sid/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:171 http://127.0.0.1:12990/debian sid/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:172 http://127.0.0.1:12990/debian sid/main amd64 libcdt5 amd64 2.42.2-5 [62.2 kB] Get:173 http://127.0.0.1:12990/debian sid/main amd64 libcgraph6 amd64 2.42.2-5 [85.5 kB] Get:174 http://127.0.0.1:12990/debian sid/main amd64 libdeflate0 amd64 1.8-1 [53.1 kB] Get:175 http://127.0.0.1:12990/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:176 http://127.0.0.1:12990/debian sid/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get:177 http://127.0.0.1:12990/debian sid/main amd64 libtiff5 amd64 4.3.0-2 [294 kB] Get:178 http://127.0.0.1:12990/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:179 http://127.0.0.1:12990/debian sid/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:180 http://127.0.0.1:12990/debian sid/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:181 http://127.0.0.1:12990/debian sid/main amd64 libpixman-1-0 amd64 0.40.0-1 [543 kB] Get:182 http://127.0.0.1:12990/debian sid/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:183 http://127.0.0.1:12990/debian sid/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get:184 http://127.0.0.1:12990/debian sid/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get:185 http://127.0.0.1:12990/debian sid/main amd64 libthai-data all 0.1.28-4.1 [171 kB] Get:186 http://127.0.0.1:12990/debian sid/main amd64 libdatrie1 amd64 0.2.13-2 [43.0 kB] Get:187 http://127.0.0.1:12990/debian sid/main amd64 libthai0 amd64 0.1.28-4.1 [54.5 kB] Get:188 http://127.0.0.1:12990/debian sid/main amd64 libpango-1.0-0 amd64 1.48.10+ds1-1 [204 kB] Get:189 http://127.0.0.1:12990/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.48.10+ds1-1 [73.3 kB] Get:190 http://127.0.0.1:12990/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.48.10+ds1-1 [60.7 kB] Get:191 http://127.0.0.1:12990/debian sid/main amd64 libpathplan4 amd64 2.42.2-5 [64.3 kB] Get:192 http://127.0.0.1:12990/debian sid/main amd64 libgvc6 amd64 2.42.2-5 [695 kB] Get:193 http://127.0.0.1:12990/debian sid/main amd64 libgvpr2 amd64 2.42.2-5 [212 kB] Get:194 http://127.0.0.1:12990/debian sid/main amd64 liblab-gamut1 amd64 2.42.2-5 [221 kB] Get:195 http://127.0.0.1:12990/debian sid/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:196 http://127.0.0.1:12990/debian sid/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:197 http://127.0.0.1:12990/debian sid/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB] Get:198 http://127.0.0.1:12990/debian sid/main amd64 graphviz amd64 2.42.2-5 [632 kB] Get:199 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get:200 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get:201 http://127.0.0.1:12990/debian sid/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get:202 http://127.0.0.1:12990/debian sid/main amd64 libblas3 amd64 3.10.0-1 [156 kB] Get:203 http://127.0.0.1:12990/debian sid/main amd64 libgcc-10-dev amd64 10.3.0-11 [2323 kB] Get:204 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-10-dev amd64 10.3.0-11 [1750 kB] Get:205 http://127.0.0.1:12990/debian sid/main amd64 libboost1.74-dev amd64 1.74.0-11 [9533 kB] Get:206 http://127.0.0.1:12990/debian sid/main amd64 libboost-atomic1.74.0 amd64 1.74.0-11 [244 kB] Get:207 http://127.0.0.1:12990/debian sid/main amd64 libboost-atomic1.74-dev amd64 1.74.0-11 [245 kB] Get:208 http://127.0.0.1:12990/debian sid/main amd64 libboost-chrono1.74.0 amd64 1.74.0-11 [252 kB] Get:209 http://127.0.0.1:12990/debian sid/main amd64 libboost-chrono1.74-dev amd64 1.74.0-11 [260 kB] Get:210 http://127.0.0.1:12990/debian sid/main amd64 libboost-date-time1.74.0 amd64 1.74.0-11 [241 kB] Get:211 http://127.0.0.1:12990/debian sid/main amd64 libboost-serialization1.74.0 amd64 1.74.0-11 [340 kB] Get:212 http://127.0.0.1:12990/debian sid/main amd64 libboost-serialization1.74-dev amd64 1.74.0-11 [381 kB] Get:213 http://127.0.0.1:12990/debian sid/main amd64 libboost-date-time1.74-dev amd64 1.74.0-11 [251 kB] Get:214 http://127.0.0.1:12990/debian sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:215 http://127.0.0.1:12990/debian sid/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-11 [283 kB] Get:216 http://127.0.0.1:12990/debian sid/main amd64 libboost-system1.74.0 amd64 1.74.0-11 [242 kB] Get:217 http://127.0.0.1:12990/debian sid/main amd64 libboost-system1.74-dev amd64 1.74.0-11 [243 kB] Get:218 http://127.0.0.1:12990/debian sid/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-11 [303 kB] Get:219 http://127.0.0.1:12990/debian sid/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get:220 http://127.0.0.1:12990/debian sid/main amd64 libboost-program-options1.74.0 amd64 1.74.0-11 [356 kB] Get:221 http://127.0.0.1:12990/debian sid/main amd64 libboost-program-options1.74-dev amd64 1.74.0-11 [385 kB] Get:222 http://127.0.0.1:12990/debian sid/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get:223 http://127.0.0.1:12990/debian sid/main amd64 libboost-system-dev amd64 1.74.0.3 [4468 B] Get:224 http://127.0.0.1:12990/debian sid/main amd64 libboost-test1.74.0 amd64 1.74.0-11 [472 kB] Get:225 http://127.0.0.1:12990/debian sid/main amd64 libboost-test1.74-dev amd64 1.74.0-11 [544 kB] Get:226 http://127.0.0.1:12990/debian sid/main amd64 libboost-test-dev amd64 1.74.0.3 [4368 B] Get:227 http://127.0.0.1:12990/debian sid/main amd64 libboost-thread1.74.0 amd64 1.74.0-11 [280 kB] Get:228 http://127.0.0.1:12990/debian sid/main amd64 libboost-thread1.74-dev amd64 1.74.0-11 [289 kB] Get:229 http://127.0.0.1:12990/debian sid/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get:230 http://127.0.0.1:12990/debian sid/main amd64 libboost-timer1.74.0 amd64 1.74.0-11 [251 kB] Get:231 http://127.0.0.1:12990/debian sid/main amd64 libboost-timer1.74-dev amd64 1.74.0-11 [254 kB] Get:232 http://127.0.0.1:12990/debian sid/main amd64 libboost-timer-dev amd64 1.74.0.3 [4456 B] Get:233 http://127.0.0.1:12990/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.2.1+dfsg-2 [338 kB] Get:234 http://127.0.0.1:12990/debian sid/main amd64 libgmp-dev amd64 2:6.2.1+dfsg-2 [641 kB] Get:235 http://127.0.0.1:12990/debian sid/main amd64 libmpfr-dev amd64 4.1.0-3 [252 kB] Get:236 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:237 http://127.0.0.1:12990/debian sid/main amd64 libcgal-dev amd64 5.3-3+b1 [4733 kB] Get:238 http://127.0.0.1:12990/debian sid/main amd64 libqt5opengl5 amd64 5.15.2+dfsg-12 [177 kB] Get:239 http://127.0.0.1:12990/debian sid/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:240 http://127.0.0.1:12990/debian sid/main amd64 x11proto-dev all 2021.5-1 [599 kB] Get:241 http://127.0.0.1:12990/debian sid/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get:242 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:243 http://127.0.0.1:12990/debian sid/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:244 http://127.0.0.1:12990/debian sid/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get:245 http://127.0.0.1:12990/debian sid/main amd64 libxcb1-dev amd64 1.14-3 [176 kB] Get:246 http://127.0.0.1:12990/debian sid/main amd64 libx11-dev amd64 2:1.7.2-2+b1 [844 kB] Get:247 http://127.0.0.1:12990/debian sid/main amd64 libglx-dev amd64 1.3.4-2+b1 [16.9 kB] Get:248 http://127.0.0.1:12990/debian sid/main amd64 libgl-dev amd64 1.3.4-2+b1 [101 kB] Get:249 http://127.0.0.1:12990/debian sid/main amd64 libegl-dev amd64 1.3.4-2+b1 [20.4 kB] Get:250 http://127.0.0.1:12990/debian sid/main amd64 libglu1-mesa amd64 9.0.1-1 [168 kB] Get:251 http://127.0.0.1:12990/debian sid/main amd64 libglu1-mesa-dev amd64 9.0.1-1 [207 kB] Get:252 http://127.0.0.1:12990/debian sid/main amd64 libqt5concurrent5 amd64 5.15.2+dfsg-12 [71.4 kB] Get:253 http://127.0.0.1:12990/debian sid/main amd64 libcups2 amd64 2.3.3op2-7 [349 kB] Get:254 http://127.0.0.1:12990/debian sid/main amd64 libqt5printsupport5 amd64 5.15.2+dfsg-12 [231 kB] Get:255 http://127.0.0.1:12990/debian sid/main amd64 libqt5sql5 amd64 5.15.2+dfsg-12 [150 kB] Get:256 http://127.0.0.1:12990/debian sid/main amd64 libqt5test5 amd64 5.15.2+dfsg-12 [173 kB] Get:257 http://127.0.0.1:12990/debian sid/main amd64 libqt5xml5 amd64 5.15.2+dfsg-12 [150 kB] Get:258 http://127.0.0.1:12990/debian sid/main amd64 libvulkan-dev amd64 1.2.189.0-2 [783 kB] Get:259 http://127.0.0.1:12990/debian sid/main amd64 libxext-dev amd64 2:1.3.4-1 [107 kB] Get:260 http://127.0.0.1:12990/debian sid/main amd64 qtbase5-dev-tools amd64 5.15.2+dfsg-12 [775 kB] Get:261 http://127.0.0.1:12990/debian sid/main amd64 qtbase5-dev amd64 5.15.2+dfsg-12 [1150 kB] Get:262 http://127.0.0.1:12990/debian sid/main amd64 libqt5opengl5-dev amd64 5.15.2+dfsg-12 [78.4 kB] Get:263 http://127.0.0.1:12990/debian sid/main amd64 libcgal-qt5-dev amd64 5.3-3+b1 [134 kB] Get:264 http://127.0.0.1:12990/debian sid/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:265 http://127.0.0.1:12990/debian sid/main amd64 libeigen3-dev all 3.3.9-2 [858 kB] Get:266 http://127.0.0.1:12990/debian sid/main amd64 libexpat1-dev amd64 2.4.1-3 [156 kB] Get:267 http://127.0.0.1:12990/debian sid/main amd64 libgfortran5 amd64 11.2.0-10 [710 kB] Get:268 http://127.0.0.1:12990/debian sid/main amd64 libphat-dev all 1.6-2 [16.3 kB] Get:269 http://127.0.0.1:12990/debian sid/main amd64 libhera-dev all 0~git20210508+dfsg-1 [64.7 kB] Get:270 http://127.0.0.1:12990/debian sid/main amd64 libice-dev amd64 2:1.0.10-1 [67.1 kB] Get:271 http://127.0.0.1:12990/debian sid/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:272 http://127.0.0.1:12990/debian sid/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB] Get:273 http://127.0.0.1:12990/debian sid/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get:274 http://127.0.0.1:12990/debian sid/main amd64 libjs-underscore all 1.9.1~dfsg-4 [100 kB] Get:275 http://127.0.0.1:12990/debian sid/main amd64 libjs-sphinxdoc all 4.2.0-5 [137 kB] Get:276 http://127.0.0.1:12990/debian sid/main amd64 liblapack3 amd64 3.10.0-1 [2213 kB] Get:277 http://127.0.0.1:12990/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:278 http://127.0.0.1:12990/debian sid/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:279 http://127.0.0.1:12990/debian sid/main amd64 libopenjp2-7 amd64 2.4.0-3 [172 kB] Get:280 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9 amd64 3.9.7-4 [1693 kB] Get:281 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-dev amd64 3.9.7-4 [4032 kB] Get:282 http://127.0.0.1:12990/debian sid/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get:283 http://127.0.0.1:12990/debian sid/main amd64 libpython3-all-dev amd64 3.9.2-3 [1068 B] Get:284 http://127.0.0.1:12990/debian sid/main amd64 libqglviewer2-qt5 amd64 2.6.3+dfsg2-9 [206 kB] Get:285 http://127.0.0.1:12990/debian sid/main amd64 libqglviewer-headers all 2.6.3+dfsg2-9 [54.1 kB] Get:286 http://127.0.0.1:12990/debian sid/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] Get:287 http://127.0.0.1:12990/debian sid/main amd64 libxt-dev amd64 1:1.2.0-1 [407 kB] Get:288 http://127.0.0.1:12990/debian sid/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB] Get:289 http://127.0.0.1:12990/debian sid/main amd64 libxmu-dev amd64 2:1.1.2-2+b3 [66.3 kB] Get:290 http://127.0.0.1:12990/debian sid/main amd64 libqglviewer-dev-qt5 amd64 2.6.3+dfsg2-9 [9624 B] Get:291 http://127.0.0.1:12990/debian sid/main amd64 libraqm0 amd64 0.7.0-4 [11.0 kB] Get:292 http://127.0.0.1:12990/debian sid/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:293 http://127.0.0.1:12990/debian sid/main amd64 libtbb-dev amd64 2020.3-1 [313 kB] Get:294 http://127.0.0.1:12990/debian sid/main amd64 libwebpdemux2 amd64 0.6.1-2.1 [87.7 kB] Get:295 http://127.0.0.1:12990/debian sid/main amd64 libwebpmux3 amd64 0.6.1-2.1 [97.6 kB] Get:296 http://127.0.0.1:12990/debian sid/main amd64 pybind11-dev all 2.7.1-1 [162 kB] Get:297 http://127.0.0.1:12990/debian sid/main amd64 python-matplotlib-data all 3.3.4-2 [4154 kB] Get:298 http://127.0.0.1:12990/debian sid/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get:299 http://127.0.0.1:12990/debian sid/main amd64 python3.9-dev amd64 3.9.7-4 [508 kB] Get:300 http://127.0.0.1:12990/debian sid/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get:301 http://127.0.0.1:12990/debian sid/main amd64 python3-all-dev amd64 3.9.2-3 [1064 B] Get:302 http://127.0.0.1:12990/debian sid/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:303 http://127.0.0.1:12990/debian sid/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:304 http://127.0.0.1:12990/debian sid/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:305 http://127.0.0.1:12990/debian sid/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:306 http://127.0.0.1:12990/debian sid/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:307 http://127.0.0.1:12990/debian sid/main amd64 python3-pkg-resources all 58.2.0-1 [192 kB] Get:308 http://127.0.0.1:12990/debian sid/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:309 http://127.0.0.1:12990/debian sid/main amd64 python3-typing-extensions all 3.10.0.2-1 [35.2 kB] Get:310 http://127.0.0.1:12990/debian sid/main amd64 python3-eagerpy all 0.30.0-1 [18.7 kB] Get:311 http://127.0.0.1:12990/debian sid/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:312 http://127.0.0.1:12990/debian sid/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:313 http://127.0.0.1:12990/debian sid/main amd64 python3-importlib-metadata all 4.6.4-1 [22.5 kB] Get:314 http://127.0.0.1:12990/debian sid/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get:315 http://127.0.0.1:12990/debian sid/main amd64 python3-joblib all 0.17.0-4 [213 kB] Get:316 http://127.0.0.1:12990/debian sid/main amd64 python3-kiwisolver amd64 1.3.2-1 [55.6 kB] Get:317 http://127.0.0.1:12990/debian sid/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:318 http://127.0.0.1:12990/debian sid/main amd64 python3-pil amd64 8.3.2-1 [453 kB] Get:319 http://127.0.0.1:12990/debian sid/main amd64 python3-matplotlib amd64 3.3.4-2 [6265 kB] Get:320 http://127.0.0.1:12990/debian sid/main amd64 python3-packaging all 21.0-1 [33.5 kB] Get:321 http://127.0.0.1:12990/debian sid/main amd64 python3-pluggy all 0.13.0-7 [22.4 kB] Get:322 http://127.0.0.1:12990/debian sid/main amd64 python3-scipy amd64 1.7.1-1 [13.2 MB] Get:323 http://127.0.0.1:12990/debian sid/main amd64 python3-pot amd64 0.7.0+dfsg-4 [103 kB] Get:324 http://127.0.0.1:12990/debian sid/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get:325 http://127.0.0.1:12990/debian sid/main amd64 python3-pybind11 all 2.7.1-1 [173 kB] Get:326 http://127.0.0.1:12990/debian sid/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get:327 http://127.0.0.1:12990/debian sid/main amd64 python3-pytest all 6.2.5-1 [218 kB] Get:328 http://127.0.0.1:12990/debian sid/main amd64 python3-setuptools all 58.2.0-1 [396 kB] Get:329 http://127.0.0.1:12990/debian sid/main amd64 python3-sklearn-lib amd64 0.23.2-5 [1884 kB] Get:330 http://127.0.0.1:12990/debian sid/main amd64 python3-threadpoolctl all 2.1.0-1 [15.3 kB] Get:331 http://127.0.0.1:12990/debian sid/main amd64 python3-sklearn all 0.23.2-5 [1818 kB] Get:332 http://127.0.0.1:12990/debian sid/main amd64 python3-tk amd64 3.9.7-1 [109 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 207 MB in 1s (139 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14273 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-4_amd64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../05-libglib2.0-0_2.70.0-3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.70.0-3) ... 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Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all amd64 arm64 i386 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 x32) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-10-dev_10.3.0-11 libstdc++-11-dev_11.2.0-10 libstdc++6_11.2.0-10 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 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tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 ttf-bitstream-vera_1.10-8.1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-4 x11-common_1:7.7+23 x11proto-dev_2021.5-1 xkb-data_2.33-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gudhi Binary: libgudhi-dev, libgudhi-examples, libgudhi-doc, python3-gudhi, gudhui, gudhi-utils Architecture: all amd64 arm64 i386 mips64el ppc64el s390x ia64 ppc64 riscv64 sparc64 x32 Version: 3.4.1+dfsg-2 Maintainer: Gard Spreemann Homepage: https://gudhi.inria.fr/ Standards-Version: 4.5.1.0 Vcs-Browser: https://salsa.debian.org/gspr/gudhi Vcs-Git: https://salsa.debian.org/gspr/gudhi.git -b debian/sid Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-eagerpy, python3-matplotlib, python3-pot, python3-pytest, python3-scipy, python3-sklearn, python3-tk Build-Depends: cmake (>= 3.5), cython3, debhelper-compat (= 13), dh-python, libboost-filesystem-dev (>= 1.56), libboost-program-options-dev (>= 1.56), libboost-system-dev (>= 1.56), libboost-test-dev (>= 1.56), libboost-thread-dev (>= 1.56), libboost-timer-dev (>= 1.56), libcgal-dev (>= 5.0), libcgal-qt5-dev (>> 4.11.0), libeigen3-dev, libgmp-dev, libhera-dev, libqglviewer-dev-qt5, libtbb-dev, pybind11-dev, python3-all-dev, python3-eagerpy, python3-matplotlib, python3-numpy, python3-pot, python3-pybind11, python3-pytest, python3-scipy, python3-setuptools, python3-sklearn, python3-tk, qtbase5-dev Build-Depends-Indep: doxygen, graphviz Package-List: gudhi-utils deb math optional arch=amd64,arm64,i386,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,x32 gudhui deb math optional arch=amd64,arm64,i386,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,x32 libgudhi-dev deb libdevel optional arch=all libgudhi-doc deb doc optional arch=all libgudhi-examples deb misc optional arch=all python3-gudhi deb python optional arch=amd64,arm64,i386,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,x32 Checksums-Sha1: 79628884576956709a0a47912602964d985e82c1 21931610 gudhi_3.4.1+dfsg.orig.tar.gz cb57e0cfe410f23883d214ab42c80bb4d6fd29b3 11156 gudhi_3.4.1+dfsg-2.debian.tar.xz Checksums-Sha256: 5bae9791fb9f713789aa859d7330527c7dfd877d931f0ab3ed4566b41711b339 21931610 gudhi_3.4.1+dfsg.orig.tar.gz db05a7891bec123674866e380281db544de62e4f2cbd8a66e194ef1467daa289 11156 gudhi_3.4.1+dfsg-2.debian.tar.xz Files: 8251313989108e6f6d5b3c906ca6307e 21931610 gudhi_3.4.1+dfsg.orig.tar.gz 7ec2b80ec0ee9abbf0155887902610ba 11156 gudhi_3.4.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEz8XvhRCFHnNVtV6AnRFYKv1UjPoFAmEctZgSHGdzcHJAbm9u 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CFC5EF8510851E7355B55E809D11582AFD548CFA gpgv: issuer "gspr@nonempty.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gudhi_3.4.1+dfsg-2.dsc dpkg-source: info: extracting gudhi in /<> dpkg-source: info: unpacking gudhi_3.4.1+dfsg.orig.tar.gz dpkg-source: info: unpacking gudhi_3.4.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Disable-tests-that-use-DFSG-deleted-data-files.patch dpkg-source: info: applying 0002-Use-system-MathJax.patch dpkg-source: info: applying 0004-Offline-header-for-docs.patch dpkg-source: info: applying 0005-Disable-Sphinx.patch dpkg-source: info: applying 0006-Install-Python-module-in-correct-location.patch dpkg-source: info: applying 0007-Move-towards-reproducible-builds.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-06da09d2-98b5-4dac-9f0a-0fa3a141a70c SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package gudhi dpkg-buildpackage: info: source version 3.4.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Gard Spreemann dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --no-parallel --with=python3 dh_auto_clean -O--buildsystem=cmake -O--no-parallel dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel dh_clean -O--buildsystem=cmake -O--no-parallel debian/rules binary dh binary --buildsystem=cmake --no-parallel --with=python3 dh_update_autotools_config -O--buildsystem=cmake -O--no-parallel dh_autoreconf -O--buildsystem=cmake -O--no-parallel debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure --buildsystem=cmake --no-parallel --builddirectory=build -- -DWITH_GUDHI_BENCHMARK=true -DWITH_GUDHI_EXAMPLE=true -DWITH_GUDHI_PYTHON=false -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=true -DUSER_VERSION_DIR=userversion -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DWITH_GUDHI_BENCHMARK=true -DWITH_GUDHI_EXAMPLE=true -DWITH_GUDHI_PYTHON=false -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=true -DUSER_VERSION_DIR=userversion -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein .. -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- GUDHI version : 3.4.1 -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found GMPXX: /usr/lib/x86_64-linux-gnu/libgmpxx.so -- Using header-only CGAL -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.48") -- Boost include dirs: /usr/include -- Boost libraries: -- CGAL version: 5.3. -- Build type: None -- USING CXXFLAGS = '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 ' -- USING EXEFLAGS = '-Wl,-z,relro -Wl,-z,now ' -- Performing Test TBB_without_pthread -- Performing Test TBB_without_pthread - Failed -- Performing Test TBB_with_pthread -- Performing Test TBB_with_pthread - Success -- Found Intel TBB TBB found in /usr/lib/x86_64-linux-gnu -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.3.9", minimum required is "3.1.0") gprof found in /usr/bin/gprof diff found in /usr/bin/diff -- boost include dirs:/usr/include -- boost library dirs:/usr/lib/x86_64-linux-gnu -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.7") ++ Python module cython - Version 0.29.24 found ++ Python module pytest - Version 6.2.5 found ++ Python module matplotlib - Version 3.3.4 found ++ Python module numpy - Version 1.19.5 found ++ Python module scipy - Version 1.7.1 found ++ Python module sklearn - Version 0.23.2 found ++ Python module ot - Version 0.7.0 found ++ Python module pybind11 - Version 2.7.1 found PYTHON_MODULE_NAME = torch - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'torch' PYTHON_MODULE_NAME = pykeops - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pykeops' ++ Python module eagerpy - Version 0.30.0 found PYTHON_MODULE_NAME = hnswlib - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'hnswlib' PYTHON_MODULE_NAME = tensorflow - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'tensorflow' -- Checking to see if CXX compiler accepts flag -Wall -- Checking to see if CXX compiler accepts flag -Wall - yes ++ Release compilation flags are: -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -O3 -DNDEBUG ++ GUDHI_SUB_DIRECTORIES list is:";benchmark;example;test;utilities" ++ Python module will not be compiled because WITH_GUDHI_PYTHON is set to OFF ++ GUDHI_MODULES list is:"common;Alpha_complex;Bitmap_cubical_complex;Bottleneck_distance;Collapse;Contraction;Cech_complex;Hasse_complex;Persistence_representations;Persistent_cohomology;Rips_complex;Simplex_tree;Skeleton_blocker;Spatial_searching;Subsampling;Tangential_complex;Toplex_map;Witness_complex;Nerve_GIC;GudhUI;cpp-documentation" ++ GUDHI_MISSING_MODULES list is:"python" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/build make -C build user_version make[2]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 user_version make[3]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 CMakeFiles/user_version.dir/all make[4]: Entering directory '/<>/build' make -f CMakeFiles/user_version.dir/build.make CMakeFiles/user_version.dir/depend make[5]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build /<>/build /<>/build/CMakeFiles/user_version.dir/DependInfo.cmake --color= make[5]: Leaving directory '/<>/build' make -f CMakeFiles/user_version.dir/build.make CMakeFiles/user_version.dir/build make[5]: Entering directory '/<>/build' user_version creation in /<>/build/userversion /usr/bin/cmake -E make_directory /<>/build/userversion /usr/bin/cmake -E copy /<>/build/src/Doxyfile /<>/build/userversion/Doxyfile /usr/bin/cmake -E copy_directory /<>/build/biblio /<>/build/userversion/biblio /usr/bin/cmake -E copy /<>/README.md /<>/build/userversion/README.md /usr/bin/cmake -E copy /<>/LICENSE /<>/build/userversion/LICENSE /usr/bin/cmake -E copy /<>/src/CMakeLists.txt /<>/build/userversion/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/GUDHIConfigVersion.cmake.in /<>/build/userversion/GUDHIConfigVersion.cmake.in /usr/bin/cmake -E copy /<>/src/GUDHIConfig.cmake.in /<>/build/userversion/GUDHIConfig.cmake.in /usr/bin/cmake -E copy /<>/CMakeGUDHIVersion.txt /<>/build/userversion/CMakeGUDHIVersion.txt /usr/bin/cmake -E copy /<>/src/python/CMakeLists.txt /<>/build/userversion/python/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/python/CONVENTIONS /<>/build/userversion/python/CONVENTIONS /usr/bin/cmake -E copy /<>/src/python/README /<>/build/userversion/python/README /usr/bin/cmake -E copy /<>/src/python/doc/_templates/layout.html /<>/build/userversion/python/doc/_templates/layout.html /usr/bin/cmake -E copy /<>/src/python/doc/alpha_complex_ref.rst /<>/build/userversion/python/doc/alpha_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/alpha_complex_sum.inc /<>/build/userversion/python/doc/alpha_complex_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/alpha_complex_user.rst /<>/build/userversion/python/doc/alpha_complex_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/bottleneck_distance_sum.inc /<>/build/userversion/python/doc/bottleneck_distance_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/bottleneck_distance_user.rst /<>/build/userversion/python/doc/bottleneck_distance_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/citation.rst /<>/build/userversion/python/doc/citation.rst /usr/bin/cmake -E copy /<>/src/python/doc/clustering.inc /<>/build/userversion/python/doc/clustering.inc /usr/bin/cmake -E copy /<>/src/python/doc/clustering.rst /<>/build/userversion/python/doc/clustering.rst /usr/bin/cmake -E copy /<>/src/python/doc/conf.py /<>/build/userversion/python/doc/conf.py /usr/bin/cmake -E copy /<>/src/python/doc/cubical_complex_ref.rst /<>/build/userversion/python/doc/cubical_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/cubical_complex_sum.inc /<>/build/userversion/python/doc/cubical_complex_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/cubical_complex_user.rst /<>/build/userversion/python/doc/cubical_complex_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/diagram_readers_ref.rst /<>/build/userversion/python/doc/diagram_readers_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/euclidean_strong_witness_complex_ref.rst /<>/build/userversion/python/doc/euclidean_strong_witness_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/euclidean_witness_complex_ref.rst /<>/build/userversion/python/doc/euclidean_witness_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/examples.rst /<>/build/userversion/python/doc/examples.rst /usr/bin/cmake -E copy /<>/src/python/doc/fileformats.rst /<>/build/userversion/python/doc/fileformats.rst /usr/bin/cmake -E copy /<>/src/python/doc/img/barycenter.png /<>/build/userversion/python/doc/img/barycenter.png /usr/bin/cmake -E copy /<>/src/python/doc/img/graphical_tools_representation.png /<>/build/userversion/python/doc/img/graphical_tools_representation.png /usr/bin/cmake -E copy /<>/src/python/doc/img/sklearn-tda.png /<>/build/userversion/python/doc/img/sklearn-tda.png /usr/bin/cmake -E copy /<>/src/python/doc/img/spiral-color.png /<>/build/userversion/python/doc/img/spiral-color.png /usr/bin/cmake -E copy /<>/src/python/doc/index.rst /<>/build/userversion/python/doc/index.rst /usr/bin/cmake -E copy /<>/src/python/doc/installation.rst /<>/build/userversion/python/doc/installation.rst /usr/bin/cmake -E copy /<>/src/python/doc/nerve_gic_complex_ref.rst /<>/build/userversion/python/doc/nerve_gic_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/nerve_gic_complex_sum.inc /<>/build/userversion/python/doc/nerve_gic_complex_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/nerve_gic_complex_user.rst /<>/build/userversion/python/doc/nerve_gic_complex_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/periodic_cubical_complex_ref.rst /<>/build/userversion/python/doc/periodic_cubical_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/persistence_graphical_tools_ref.rst /<>/build/userversion/python/doc/persistence_graphical_tools_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/persistence_graphical_tools_sum.inc /<>/build/userversion/python/doc/persistence_graphical_tools_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/persistence_graphical_tools_user.rst /<>/build/userversion/python/doc/persistence_graphical_tools_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/persistent_cohomology_sum.inc /<>/build/userversion/python/doc/persistent_cohomology_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/persistent_cohomology_user.rst /<>/build/userversion/python/doc/persistent_cohomology_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/point_cloud.rst /<>/build/userversion/python/doc/point_cloud.rst /usr/bin/cmake -E copy /<>/src/python/doc/point_cloud_sum.inc /<>/build/userversion/python/doc/point_cloud_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/representations.rst /<>/build/userversion/python/doc/representations.rst /usr/bin/cmake -E copy /<>/src/python/doc/representations_sum.inc /<>/build/userversion/python/doc/representations_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/rips_complex_ref.rst /<>/build/userversion/python/doc/rips_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/rips_complex_sum.inc /<>/build/userversion/python/doc/rips_complex_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/rips_complex_user.rst /<>/build/userversion/python/doc/rips_complex_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/simplex_tree_ref.rst /<>/build/userversion/python/doc/simplex_tree_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/simplex_tree_sum.inc /<>/build/userversion/python/doc/simplex_tree_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/simplex_tree_user.rst 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-E copy /<>/src/Witness_complex/include/gudhi/Euclidean_witness_complex.h /<>/build/userversion/include/gudhi/Euclidean_witness_complex.h /usr/bin/cmake -E copy /<>/src/Witness_complex/include/gudhi/Strong_witness_complex.h /<>/build/userversion/include/gudhi/Strong_witness_complex.h /usr/bin/cmake -E copy_directory /<>/src/Witness_complex/include/gudhi/Witness_complex /<>/build/userversion/include/gudhi/Witness_complex /usr/bin/cmake -E copy /<>/src/Witness_complex/include/gudhi/Witness_complex.h /<>/build/userversion/include/gudhi/Witness_complex.h /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/COPYRIGHT /<>/build/userversion/doc/Nerve_GIC/COPYRIGHT /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/GIC.jpg /<>/build/userversion/doc/Nerve_GIC/GIC.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/GIC.pdf /<>/build/userversion/doc/Nerve_GIC/GIC.pdf /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/Intro_graph_induced_complex.h /<>/build/userversion/doc/Nerve_GIC/Intro_graph_induced_complex.h /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/coordGICvisu.pdf /<>/build/userversion/doc/Nerve_GIC/coordGICvisu.pdf /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/coordGICvisu2.jpg /<>/build/userversion/doc/Nerve_GIC/coordGICvisu2.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/funcGICvisu.jpg /<>/build/userversion/doc/Nerve_GIC/funcGICvisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/funcGICvisu.pdf /<>/build/userversion/doc/Nerve_GIC/funcGICvisu.pdf /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/gicvisu.jpg /<>/build/userversion/doc/Nerve_GIC/gicvisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/gicvoronoivisu.jpg /<>/build/userversion/doc/Nerve_GIC/gicvoronoivisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/nerve.png /<>/build/userversion/doc/Nerve_GIC/nerve.png /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/nervevisu.jpg /<>/build/userversion/doc/Nerve_GIC/nervevisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/example/CMakeLists.txt /<>/build/userversion/example/Nerve_GIC/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Nerve_GIC/example/CoordGIC.cpp /<>/build/userversion/example/Nerve_GIC/CoordGIC.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/example/FuncGIC.cpp /<>/build/userversion/example/Nerve_GIC/FuncGIC.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/CMakeLists.txt /<>/build/userversion/utilities/Nerve_GIC/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/KeplerMapperVisuFromTxtFile.py /<>/build/userversion/utilities/Nerve_GIC/KeplerMapperVisuFromTxtFile.py /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/Nerve.cpp /<>/build/userversion/utilities/Nerve_GIC/Nerve.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/Nerve.txt /<>/build/userversion/utilities/Nerve_GIC/Nerve.txt /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/VoronoiGIC.cpp /<>/build/userversion/utilities/Nerve_GIC/VoronoiGIC.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/covercomplex.md /<>/build/userversion/utilities/Nerve_GIC/covercomplex.md /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/km.py /<>/build/userversion/utilities/Nerve_GIC/km.py /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/km.py.COPYRIGHT /<>/build/userversion/utilities/Nerve_GIC/km.py.COPYRIGHT /usr/bin/cmake -E copy /<>/src/Nerve_GIC/include/gudhi/GIC.h /<>/build/userversion/include/gudhi/GIC.h make[5]: Leaving directory '/<>/build' Built target user_version make[4]: Leaving directory '/<>/build' /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles 0 make[3]: Leaving directory '/<>/build' make[2]: Leaving directory '/<>/build' for py3ver in 3.9 ; do \ dh_auto_configure --buildsystem=cmake --no-parallel --builddirectory=build-py$py3ver -- -DWITH_GUDHI_BENCHMARK=false -DWITH_GUDHI_EXAMPLE=false -DWITH_GUDHI_PYTHON=true -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=false -DPython_ADDITIONAL_VERSIONS=$py3ver -DUSER_VERSION_DIR=userversion -DWITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS=false -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein ; \ make -C build-py$py3ver user_version ; \ done cd build-py3.9 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DWITH_GUDHI_BENCHMARK=false -DWITH_GUDHI_EXAMPLE=false -DWITH_GUDHI_PYTHON=true -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=false -DPython_ADDITIONAL_VERSIONS=3.9 -DUSER_VERSION_DIR=userversion -DWITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS=false -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein .. -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- GUDHI version : 3.4.1 -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found GMPXX: /usr/lib/x86_64-linux-gnu/libgmpxx.so -- Using header-only CGAL -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.48") -- Boost include dirs: /usr/include -- Boost libraries: -- CGAL version: 5.3. -- Build type: None -- USING CXXFLAGS = '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 ' -- USING EXEFLAGS = '-Wl,-z,relro -Wl,-z,now ' -- Performing Test TBB_without_pthread -- Performing Test TBB_without_pthread - Failed -- Performing Test TBB_with_pthread -- Performing Test TBB_with_pthread - Success -- Found Intel TBB TBB found in /usr/lib/x86_64-linux-gnu -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.3.9", minimum required is "3.1.0") gprof found in /usr/bin/gprof diff found in /usr/bin/diff -- boost include dirs:/usr/include -- boost library dirs:/usr/lib/x86_64-linux-gnu -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.7") ++ Python module cython - Version 0.29.24 found ++ Python module pytest - Version 6.2.5 found ++ Python module matplotlib - Version 3.3.4 found ++ Python module numpy - Version 1.19.5 found ++ Python module scipy - Version 1.7.1 found ++ Python module sklearn - Version 0.23.2 found ++ Python module ot - Version 0.7.0 found ++ Python module pybind11 - Version 2.7.1 found PYTHON_MODULE_NAME = torch - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'torch' PYTHON_MODULE_NAME = pykeops - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pykeops' ++ Python module eagerpy - Version 0.30.0 found PYTHON_MODULE_NAME = hnswlib - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'hnswlib' PYTHON_MODULE_NAME = tensorflow - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'tensorflow' -- Checking to see if CXX compiler accepts flag -Wall -- Checking to see if CXX compiler accepts flag -Wall - yes ++ Release compilation flags are: -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -O3 -DNDEBUG ++ GUDHI_SUB_DIRECTORIES list is:";test" add_GUDHI_PYTHON_lib_dir - '' does not exist ** Add CGAL ** Add Boost /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libgmp.so => UNIX_LIB_FILE_NAME = gmp ** Add gmp /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libgmpxx.so => UNIX_LIB_FILE_NAME = gmpxx ** Add gmpxx /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libmpfr.so => UNIX_LIB_FILE_NAME = mpfr ** Add mpfr /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libtbb.so => UNIX_LIB_FILE_NAME = tbb ++ /usr/lib/x86_64-linux-gnu/libtbbmalloc.so => UNIX_LIB_FILE_NAME = tbbmalloc ** Add tbb /usr/lib/x86_64-linux-gnu ++ Python documentation module will not be compiled because sphinx and sphinxcontrib-bibtex were not found ++ GUDHI_MODULES list is:"common;Alpha_complex;Bitmap_cubical_complex;Bottleneck_distance;Collapse;Contraction;Cech_complex;Hasse_complex;Persistence_representations;Persistent_cohomology;Rips_complex;Simplex_tree;Skeleton_blocker;Spatial_searching;Subsampling;Tangential_complex;Toplex_map;Witness_complex;Nerve_GIC;GudhUI;python;cpp-documentation" ++ GUDHI_MISSING_MODULES list is:"python-documentation" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/build-py3.9 make[2]: Entering directory '/<>/build-py3.9' /usr/bin/cmake -S/<> -B/<>/build-py3.9 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 user_version make[3]: Entering directory '/<>/build-py3.9' /usr/bin/cmake -S/<> 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copy /<>/src/python/doc/conf.py /<>/build-py3.9/userversion/python/doc/conf.py /usr/bin/cmake -E copy /<>/src/python/doc/cubical_complex_ref.rst /<>/build-py3.9/userversion/python/doc/cubical_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/cubical_complex_sum.inc /<>/build-py3.9/userversion/python/doc/cubical_complex_sum.inc /usr/bin/cmake -E copy /<>/src/python/doc/cubical_complex_user.rst /<>/build-py3.9/userversion/python/doc/cubical_complex_user.rst /usr/bin/cmake -E copy /<>/src/python/doc/diagram_readers_ref.rst /<>/build-py3.9/userversion/python/doc/diagram_readers_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/euclidean_strong_witness_complex_ref.rst /<>/build-py3.9/userversion/python/doc/euclidean_strong_witness_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/euclidean_witness_complex_ref.rst /<>/build-py3.9/userversion/python/doc/euclidean_witness_complex_ref.rst /usr/bin/cmake -E copy /<>/src/python/doc/examples.rst 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/<>/build-py3.9/userversion/doc/Tangential_complex/Intro_tangential_complex.h /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_01.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_01.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_02.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_02.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_03.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_03.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_05.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_05.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_06.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_06.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_07.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_07.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_07_after.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_07_after.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_07_before.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_07_before.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_08.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_08.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_example_09.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_example_09.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/doc/tc_examples.png /<>/build-py3.9/userversion/doc/Tangential_complex/tc_examples.png /usr/bin/cmake -E copy /<>/src/Tangential_complex/example/CMakeLists.txt /<>/build-py3.9/userversion/example/Tangential_complex/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Tangential_complex/example/example_basic.cpp /<>/build-py3.9/userversion/example/Tangential_complex/example_basic.cpp /usr/bin/cmake -E copy /<>/src/Tangential_complex/example/example_with_perturb.cpp /<>/build-py3.9/userversion/example/Tangential_complex/example_with_perturb.cpp /usr/bin/cmake -E copy_directory /<>/src/Tangential_complex/include/gudhi/Tangential_complex /<>/build-py3.9/userversion/include/gudhi/Tangential_complex /usr/bin/cmake -E copy /<>/src/Tangential_complex/include/gudhi/Tangential_complex.h /<>/build-py3.9/userversion/include/gudhi/Tangential_complex.h /usr/bin/cmake -E copy /<>/src/Toplex_map/doc/Intro_Toplex_map.h /<>/build-py3.9/userversion/doc/Toplex_map/Intro_Toplex_map.h /usr/bin/cmake -E copy /<>/src/Toplex_map/doc/map.png /<>/build-py3.9/userversion/doc/Toplex_map/map.png /usr/bin/cmake -E copy /<>/src/Toplex_map/example/CMakeLists.txt /<>/build-py3.9/userversion/example/Toplex_map/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Toplex_map/example/simple_toplex_map.cpp /<>/build-py3.9/userversion/example/Toplex_map/simple_toplex_map.cpp /usr/bin/cmake -E copy /<>/src/Toplex_map/include/gudhi/Lazy_toplex_map.h /<>/build-py3.9/userversion/include/gudhi/Lazy_toplex_map.h /usr/bin/cmake -E copy /<>/src/Toplex_map/include/gudhi/Toplex_map.h /<>/build-py3.9/userversion/include/gudhi/Toplex_map.h /usr/bin/cmake -E copy /<>/src/Witness_complex/doc/COPYRIGHT /<>/build-py3.9/userversion/doc/Witness_complex/COPYRIGHT /usr/bin/cmake -E copy /<>/src/Witness_complex/doc/Witness_complex_doc.h /<>/build-py3.9/userversion/doc/Witness_complex/Witness_complex_doc.h /usr/bin/cmake -E copy /<>/src/Witness_complex/doc/Witness_complex_representation.ipe /<>/build-py3.9/userversion/doc/Witness_complex/Witness_complex_representation.ipe /usr/bin/cmake -E copy /<>/src/Witness_complex/doc/Witness_complex_representation.png /<>/build-py3.9/userversion/doc/Witness_complex/Witness_complex_representation.png /usr/bin/cmake -E copy /<>/src/Witness_complex/doc/bench_Cy8.png /<>/build-py3.9/userversion/doc/Witness_complex/bench_Cy8.png /usr/bin/cmake -E copy /<>/src/Witness_complex/doc/bench_sphere.png /<>/build-py3.9/userversion/doc/Witness_complex/bench_sphere.png /usr/bin/cmake -E copy /<>/src/Witness_complex/doc/swit.svg /<>/build-py3.9/userversion/doc/Witness_complex/swit.svg /usr/bin/cmake -E copy /<>/src/Witness_complex/example/CMakeLists.txt /<>/build-py3.9/userversion/example/Witness_complex/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Witness_complex/example/example_nearest_landmark_table.cpp /<>/build-py3.9/userversion/example/Witness_complex/example_nearest_landmark_table.cpp /usr/bin/cmake -E copy /<>/src/Witness_complex/example/example_strong_witness_complex_off.cpp /<>/build-py3.9/userversion/example/Witness_complex/example_strong_witness_complex_off.cpp /usr/bin/cmake -E copy /<>/src/Witness_complex/example/example_witness_complex_off.cpp /<>/build-py3.9/userversion/example/Witness_complex/example_witness_complex_off.cpp /usr/bin/cmake -E copy /<>/src/Witness_complex/example/example_witness_complex_sphere.cpp /<>/build-py3.9/userversion/example/Witness_complex/example_witness_complex_sphere.cpp /usr/bin/cmake -E copy /<>/src/Witness_complex/example/generators.h /<>/build-py3.9/userversion/example/Witness_complex/generators.h /usr/bin/cmake -E copy /<>/src/Witness_complex/concept/SimplicialComplexForWitness.h /<>/build-py3.9/userversion/concept/Witness_complex/SimplicialComplexForWitness.h /usr/bin/cmake -E copy /<>/src/Witness_complex/utilities/CMakeLists.txt /<>/build-py3.9/userversion/utilities/Witness_complex/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Witness_complex/utilities/strong_witness_persistence.cpp /<>/build-py3.9/userversion/utilities/Witness_complex/strong_witness_persistence.cpp /usr/bin/cmake -E copy /<>/src/Witness_complex/utilities/weak_witness_persistence.cpp /<>/build-py3.9/userversion/utilities/Witness_complex/weak_witness_persistence.cpp /usr/bin/cmake -E copy /<>/src/Witness_complex/utilities/witnesscomplex.md /<>/build-py3.9/userversion/utilities/Witness_complex/witnesscomplex.md /usr/bin/cmake -E copy_directory /<>/src/Witness_complex/include/gudhi/Active_witness /<>/build-py3.9/userversion/include/gudhi/Active_witness /usr/bin/cmake -E copy /<>/src/Witness_complex/include/gudhi/Euclidean_strong_witness_complex.h /<>/build-py3.9/userversion/include/gudhi/Euclidean_strong_witness_complex.h /usr/bin/cmake -E copy /<>/src/Witness_complex/include/gudhi/Euclidean_witness_complex.h /<>/build-py3.9/userversion/include/gudhi/Euclidean_witness_complex.h /usr/bin/cmake -E copy /<>/src/Witness_complex/include/gudhi/Strong_witness_complex.h /<>/build-py3.9/userversion/include/gudhi/Strong_witness_complex.h /usr/bin/cmake -E copy_directory /<>/src/Witness_complex/include/gudhi/Witness_complex /<>/build-py3.9/userversion/include/gudhi/Witness_complex /usr/bin/cmake -E copy /<>/src/Witness_complex/include/gudhi/Witness_complex.h /<>/build-py3.9/userversion/include/gudhi/Witness_complex.h /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/COPYRIGHT /<>/build-py3.9/userversion/doc/Nerve_GIC/COPYRIGHT /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/GIC.jpg /<>/build-py3.9/userversion/doc/Nerve_GIC/GIC.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/GIC.pdf /<>/build-py3.9/userversion/doc/Nerve_GIC/GIC.pdf /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/Intro_graph_induced_complex.h /<>/build-py3.9/userversion/doc/Nerve_GIC/Intro_graph_induced_complex.h /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/coordGICvisu.pdf /<>/build-py3.9/userversion/doc/Nerve_GIC/coordGICvisu.pdf /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/coordGICvisu2.jpg /<>/build-py3.9/userversion/doc/Nerve_GIC/coordGICvisu2.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/funcGICvisu.jpg /<>/build-py3.9/userversion/doc/Nerve_GIC/funcGICvisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/funcGICvisu.pdf /<>/build-py3.9/userversion/doc/Nerve_GIC/funcGICvisu.pdf /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/gicvisu.jpg /<>/build-py3.9/userversion/doc/Nerve_GIC/gicvisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/gicvoronoivisu.jpg /<>/build-py3.9/userversion/doc/Nerve_GIC/gicvoronoivisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/nerve.png /<>/build-py3.9/userversion/doc/Nerve_GIC/nerve.png /usr/bin/cmake -E copy /<>/src/Nerve_GIC/doc/nervevisu.jpg /<>/build-py3.9/userversion/doc/Nerve_GIC/nervevisu.jpg /usr/bin/cmake -E copy /<>/src/Nerve_GIC/example/CMakeLists.txt /<>/build-py3.9/userversion/example/Nerve_GIC/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Nerve_GIC/example/CoordGIC.cpp /<>/build-py3.9/userversion/example/Nerve_GIC/CoordGIC.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/example/FuncGIC.cpp /<>/build-py3.9/userversion/example/Nerve_GIC/FuncGIC.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/CMakeLists.txt /<>/build-py3.9/userversion/utilities/Nerve_GIC/CMakeLists.txt /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/KeplerMapperVisuFromTxtFile.py /<>/build-py3.9/userversion/utilities/Nerve_GIC/KeplerMapperVisuFromTxtFile.py /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/Nerve.cpp /<>/build-py3.9/userversion/utilities/Nerve_GIC/Nerve.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/Nerve.txt /<>/build-py3.9/userversion/utilities/Nerve_GIC/Nerve.txt /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/VoronoiGIC.cpp /<>/build-py3.9/userversion/utilities/Nerve_GIC/VoronoiGIC.cpp /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/covercomplex.md /<>/build-py3.9/userversion/utilities/Nerve_GIC/covercomplex.md /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/km.py /<>/build-py3.9/userversion/utilities/Nerve_GIC/km.py /usr/bin/cmake -E copy /<>/src/Nerve_GIC/utilities/km.py.COPYRIGHT /<>/build-py3.9/userversion/utilities/Nerve_GIC/km.py.COPYRIGHT /usr/bin/cmake -E copy /<>/src/Nerve_GIC/include/gudhi/GIC.h /<>/build-py3.9/userversion/include/gudhi/GIC.h make[5]: Leaving directory '/<>/build-py3.9' Built target user_version make[4]: Leaving directory '/<>/build-py3.9' /usr/bin/cmake -E cmake_progress_start /<>/build-py3.9/CMakeFiles 0 make[3]: Leaving directory '/<>/build-py3.9' make[2]: Leaving directory '/<>/build-py3.9' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure --buildsystem=cmake --no-parallel --builddirectory=build/userversion -- -DWITH_GUDHI_BENCHMARK=true -DWITH_GUDHI_EXAMPLE=true -DWITH_GUDHI_PYTHON=false -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=true -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein cd build/userversion && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DWITH_GUDHI_BENCHMARK=true -DWITH_GUDHI_EXAMPLE=true -DWITH_GUDHI_PYTHON=false -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=true -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein ../.. -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- GUDHI version : 3.4.1 -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found GMPXX: /usr/lib/x86_64-linux-gnu/libgmpxx.so -- Using header-only CGAL -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.48") -- Boost include dirs: /usr/include -- Boost libraries: -- CGAL version: 5.3. -- Build type: None -- USING CXXFLAGS = '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 ' -- USING EXEFLAGS = '-Wl,-z,relro -Wl,-z,now ' -- Performing Test TBB_without_pthread -- Performing Test TBB_without_pthread - Failed -- Performing Test TBB_with_pthread -- Performing Test TBB_with_pthread - Success -- Found Intel TBB TBB found in /usr/lib/x86_64-linux-gnu -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.3.9", minimum required is "3.1.0") gprof found in /usr/bin/gprof diff found in /usr/bin/diff -- boost include dirs:/usr/include -- boost library dirs:/usr/lib/x86_64-linux-gnu -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.7") ++ Python module cython - Version 0.29.24 found ++ Python module pytest - Version 6.2.5 found ++ Python module matplotlib - Version 3.3.4 found ++ Python module numpy - Version 1.19.5 found ++ Python module scipy - Version 1.7.1 found ++ Python module sklearn - Version 0.23.2 found ++ Python module ot - Version 0.7.0 found ++ Python module pybind11 - Version 2.7.1 found PYTHON_MODULE_NAME = torch - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'torch' PYTHON_MODULE_NAME = pykeops - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pykeops' ++ Python module eagerpy - Version 0.30.0 found PYTHON_MODULE_NAME = hnswlib - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'hnswlib' PYTHON_MODULE_NAME = tensorflow - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'tensorflow' -- Checking to see if CXX compiler accepts flag -Wall -- Checking to see if CXX compiler accepts flag -Wall - yes ++ Release compilation flags are: -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -O3 -DNDEBUG ++ GUDHI_SUB_DIRECTORIES list is:";benchmark;example;test;utilities" ++ Python module will not be compiled because WITH_GUDHI_PYTHON is set to OFF ++ GUDHI_MODULES list is:"common;Alpha_complex;Bitmap_cubical_complex;Bottleneck_distance;Collapse;Contraction;Cech_complex;Hasse_complex;Persistence_representations;Persistent_cohomology;Rips_complex;Simplex_tree;Skeleton_blocker;Spatial_searching;Subsampling;Tangential_complex;Toplex_map;Witness_complex;Nerve_GIC;GudhUI;cpp-documentation" ++ GUDHI_MISSING_MODULES list is:"python" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/build/userversion for py3ver in 3.9 ; do \ dh_auto_configure --buildsystem=cmake --no-parallel --builddirectory=build-py$py3ver/userversion -- -DWITH_GUDHI_BENCHMARK=false -DWITH_GUDHI_EXAMPLE=false -DWITH_GUDHI_PYTHON=true -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=false -DPython_ADDITIONAL_VERSIONS=$py3ver -DWITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS=false -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein ; \ done cd build-py3.9/userversion && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DWITH_GUDHI_BENCHMARK=false -DWITH_GUDHI_EXAMPLE=false -DWITH_GUDHI_PYTHON=true -DWITH_GUDHI_TEST=true -DWITH_GUDHI_UTILITIES=false -DPython_ADDITIONAL_VERSIONS=3.9 -DWITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS=false -DHERA_BOTTLENECK_INCLUDE_DIR=/usr/include/hera/bottleneck -DHERA_WASSERSTEIN_INCLUDE_DIR=/usr/include/hera/wasserstein ../.. -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- GUDHI version : 3.4.1 -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found GMPXX: /usr/lib/x86_64-linux-gnu/libgmpxx.so -- Using header-only CGAL -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.48") -- Boost include dirs: /usr/include -- Boost libraries: -- CGAL version: 5.3. -- Build type: None -- USING CXXFLAGS = '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 ' -- USING EXEFLAGS = '-Wl,-z,relro -Wl,-z,now ' -- Performing Test TBB_without_pthread -- Performing Test TBB_without_pthread - Failed -- Performing Test TBB_with_pthread -- Performing Test TBB_with_pthread - Success -- Found Intel TBB TBB found in /usr/lib/x86_64-linux-gnu -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.3.9", minimum required is "3.1.0") gprof found in /usr/bin/gprof diff found in /usr/bin/diff -- boost include dirs:/usr/include -- boost library dirs:/usr/lib/x86_64-linux-gnu -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.7") ++ Python module cython - Version 0.29.24 found ++ Python module pytest - Version 6.2.5 found ++ Python module matplotlib - Version 3.3.4 found ++ Python module numpy - Version 1.19.5 found ++ Python module scipy - Version 1.7.1 found ++ Python module sklearn - Version 0.23.2 found ++ Python module ot - Version 0.7.0 found ++ Python module pybind11 - Version 2.7.1 found PYTHON_MODULE_NAME = torch - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'torch' PYTHON_MODULE_NAME = pykeops - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pykeops' ++ Python module eagerpy - Version 0.30.0 found PYTHON_MODULE_NAME = hnswlib - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'hnswlib' PYTHON_MODULE_NAME = tensorflow - PYTHON_MODULE_RESULT = 1 - PYTHON_MODULE_VERSION = - PYTHON_MODULE_ERROR = Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'tensorflow' -- Checking to see if CXX compiler accepts flag -Wall -- Checking to see if CXX compiler accepts flag -Wall - yes ++ Release compilation flags are: -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -O3 -DNDEBUG ++ GUDHI_SUB_DIRECTORIES list is:";test" add_GUDHI_PYTHON_lib_dir - '' does not exist ** Add CGAL ** Add Boost /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libgmp.so => UNIX_LIB_FILE_NAME = gmp ** Add gmp /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libgmpxx.so => UNIX_LIB_FILE_NAME = gmpxx ** Add gmpxx /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libmpfr.so => UNIX_LIB_FILE_NAME = mpfr ** Add mpfr /usr/lib/x86_64-linux-gnu ++ /usr/lib/x86_64-linux-gnu/libtbb.so => UNIX_LIB_FILE_NAME = tbb ++ /usr/lib/x86_64-linux-gnu/libtbbmalloc.so => UNIX_LIB_FILE_NAME = tbbmalloc ** Add tbb /usr/lib/x86_64-linux-gnu ++ Python documentation module will not be compiled because sphinx and sphinxcontrib-bibtex were not found ++ GUDHI_MODULES list is:"common;Alpha_complex;Bitmap_cubical_complex;Bottleneck_distance;Collapse;Contraction;Cech_complex;Hasse_complex;Persistence_representations;Persistent_cohomology;Rips_complex;Simplex_tree;Skeleton_blocker;Spatial_searching;Subsampling;Tangential_complex;Toplex_map;Witness_complex;Nerve_GIC;GudhUI;python;cpp-documentation" ++ GUDHI_MISSING_MODULES list is:"python-documentation" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/build-py3.9/userversion make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build --buildsystem=cmake --no-parallel --builddirectory=build/userversion cd build/userversion && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build/userversion' /usr/bin/cmake -S/<> -B/<>/build/userversion --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/userversion/CMakeFiles /<>/build/userversion//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build/userversion' make -f src/common/benchmark/CMakeFiles/Graph_simplicial_complex_benchmark.dir/build.make src/common/benchmark/CMakeFiles/Graph_simplicial_complex_benchmark.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/common/benchmark /<>/build/userversion /<>/build/userversion/src/common/benchmark /<>/build/userversion/src/common/benchmark/CMakeFiles/Graph_simplicial_complex_benchmark.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/common/benchmark/CMakeFiles/Graph_simplicial_complex_benchmark.dir/build.make src/common/benchmark/CMakeFiles/Graph_simplicial_complex_benchmark.dir/build make[4]: Entering directory '/<>/build/userversion' [ 0%] Building CXX object src/common/benchmark/CMakeFiles/Graph_simplicial_complex_benchmark.dir/Graph_simplicial_complex_benchmark.cpp.o cd /<>/build/userversion/src/common/benchmark && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/common/benchmark/CMakeFiles/Graph_simplicial_complex_benchmark.dir/Graph_simplicial_complex_benchmark.cpp.o -MF CMakeFiles/Graph_simplicial_complex_benchmark.dir/Graph_simplicial_complex_benchmark.cpp.o.d -o CMakeFiles/Graph_simplicial_complex_benchmark.dir/Graph_simplicial_complex_benchmark.cpp.o -c /<>/src/common/benchmark/Graph_simplicial_complex_benchmark.cpp [ 1%] Linking CXX executable Graph_simplicial_complex_benchmark cd /<>/build/userversion/src/common/benchmark && /usr/bin/cmake -E cmake_link_script CMakeFiles/Graph_simplicial_complex_benchmark.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Graph_simplicial_complex_benchmark.dir/Graph_simplicial_complex_benchmark.cpp.o -o Graph_simplicial_complex_benchmark /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 1%] Built target Graph_simplicial_complex_benchmark make -f src/common/example/CMakeFiles/cgal_off_reader.dir/build.make src/common/example/CMakeFiles/cgal_off_reader.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/common/example /<>/build/userversion /<>/build/userversion/src/common/example /<>/build/userversion/src/common/example/CMakeFiles/cgal_off_reader.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/common/example/CMakeFiles/cgal_off_reader.dir/build.make src/common/example/CMakeFiles/cgal_off_reader.dir/build make[4]: Entering directory '/<>/build/userversion' [ 1%] Building CXX object src/common/example/CMakeFiles/cgal_off_reader.dir/example_CGAL_points_off_reader.cpp.o cd /<>/build/userversion/src/common/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/common/example/CMakeFiles/cgal_off_reader.dir/example_CGAL_points_off_reader.cpp.o -MF CMakeFiles/cgal_off_reader.dir/example_CGAL_points_off_reader.cpp.o.d -o CMakeFiles/cgal_off_reader.dir/example_CGAL_points_off_reader.cpp.o -c /<>/src/common/example/example_CGAL_points_off_reader.cpp [ 2%] Linking CXX executable cgal_off_reader cd /<>/build/userversion/src/common/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/cgal_off_reader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/cgal_off_reader.dir/example_CGAL_points_off_reader.cpp.o -o cgal_off_reader /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 2%] Built target cgal_off_reader make -f src/common/example/CMakeFiles/cgal_3D_off_reader.dir/build.make src/common/example/CMakeFiles/cgal_3D_off_reader.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/common/example /<>/build/userversion /<>/build/userversion/src/common/example /<>/build/userversion/src/common/example/CMakeFiles/cgal_3D_off_reader.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/common/example/CMakeFiles/cgal_3D_off_reader.dir/build.make src/common/example/CMakeFiles/cgal_3D_off_reader.dir/build make[4]: Entering directory '/<>/build/userversion' [ 3%] Building CXX object src/common/example/CMakeFiles/cgal_3D_off_reader.dir/example_CGAL_3D_points_off_reader.cpp.o cd /<>/build/userversion/src/common/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/common/example/CMakeFiles/cgal_3D_off_reader.dir/example_CGAL_3D_points_off_reader.cpp.o -MF CMakeFiles/cgal_3D_off_reader.dir/example_CGAL_3D_points_off_reader.cpp.o.d -o CMakeFiles/cgal_3D_off_reader.dir/example_CGAL_3D_points_off_reader.cpp.o -c /<>/src/common/example/example_CGAL_3D_points_off_reader.cpp [ 3%] Linking CXX executable cgal_3D_off_reader cd /<>/build/userversion/src/common/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/cgal_3D_off_reader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/cgal_3D_off_reader.dir/example_CGAL_3D_points_off_reader.cpp.o -o cgal_3D_off_reader /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 3%] Built target cgal_3D_off_reader make -f src/common/example/CMakeFiles/vector_double_off_reader.dir/build.make src/common/example/CMakeFiles/vector_double_off_reader.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/common/example /<>/build/userversion /<>/build/userversion/src/common/example /<>/build/userversion/src/common/example/CMakeFiles/vector_double_off_reader.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/common/example/CMakeFiles/vector_double_off_reader.dir/build.make src/common/example/CMakeFiles/vector_double_off_reader.dir/build make[4]: Entering directory '/<>/build/userversion' [ 3%] Building CXX object src/common/example/CMakeFiles/vector_double_off_reader.dir/example_vector_double_points_off_reader.cpp.o cd /<>/build/userversion/src/common/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/common/example/CMakeFiles/vector_double_off_reader.dir/example_vector_double_points_off_reader.cpp.o -MF CMakeFiles/vector_double_off_reader.dir/example_vector_double_points_off_reader.cpp.o.d -o CMakeFiles/vector_double_off_reader.dir/example_vector_double_points_off_reader.cpp.o -c /<>/src/common/example/example_vector_double_points_off_reader.cpp [ 4%] Linking CXX executable vector_double_off_reader cd /<>/build/userversion/src/common/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/vector_double_off_reader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/vector_double_off_reader.dir/example_vector_double_points_off_reader.cpp.o -o vector_double_off_reader /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 4%] Built target vector_double_off_reader make -f src/common/test/CMakeFiles/Common_test_persistence_intervals_reader.dir/build.make src/common/test/CMakeFiles/Common_test_persistence_intervals_reader.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/common/test /<>/build/userversion /<>/build/userversion/src/common/test /<>/build/userversion/src/common/test/CMakeFiles/Common_test_persistence_intervals_reader.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/common/test/CMakeFiles/Common_test_persistence_intervals_reader.dir/build.make src/common/test/CMakeFiles/Common_test_persistence_intervals_reader.dir/build make[4]: Entering directory '/<>/build/userversion' [ 4%] Building CXX object src/common/test/CMakeFiles/Common_test_persistence_intervals_reader.dir/test_persistence_intervals_reader.cpp.o cd /<>/build/userversion/src/common/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/common/test/CMakeFiles/Common_test_persistence_intervals_reader.dir/test_persistence_intervals_reader.cpp.o -MF CMakeFiles/Common_test_persistence_intervals_reader.dir/test_persistence_intervals_reader.cpp.o.d -o CMakeFiles/Common_test_persistence_intervals_reader.dir/test_persistence_intervals_reader.cpp.o -c /<>/src/common/test/test_persistence_intervals_reader.cpp [ 5%] Linking CXX executable Common_test_persistence_intervals_reader cd /<>/build/userversion/src/common/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Common_test_persistence_intervals_reader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Common_test_persistence_intervals_reader.dir/test_persistence_intervals_reader.cpp.o -o Common_test_persistence_intervals_reader /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 5%] Built target Common_test_persistence_intervals_reader make -f src/common/test/CMakeFiles/Common_test_distance_matrix_reader.dir/build.make src/common/test/CMakeFiles/Common_test_distance_matrix_reader.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> 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-I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/common/test/CMakeFiles/Common_test_points_off_reader.dir/test_points_off_reader.cpp.o -MF CMakeFiles/Common_test_points_off_reader.dir/test_points_off_reader.cpp.o.d -o 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-DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/common/utilities/CMakeFiles/off_file_from_shape_generator.dir/off_file_from_shape_generator.cpp.o -MF 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src/Alpha_complex/benchmark/CMakeFiles/Alpha_complex_3d_benchmark.dir/Alpha_complex_3d_benchmark.cpp.o -MF CMakeFiles/Alpha_complex_3d_benchmark.dir/Alpha_complex_3d_benchmark.cpp.o.d -o CMakeFiles/Alpha_complex_3d_benchmark.dir/Alpha_complex_3d_benchmark.cpp.o -c /<>/src/Alpha_complex/benchmark/Alpha_complex_3d_benchmark.cpp [ 5%] Linking CXX executable Alpha_complex_3d_benchmark cd /<>/build/userversion/src/Alpha_complex/benchmark && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alpha_complex_3d_benchmark.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Alpha_complex_3d_benchmark.dir/Alpha_complex_3d_benchmark.cpp.o -o Alpha_complex_3d_benchmark /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 5%] Built target Alpha_complex_3d_benchmark make -f src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/build.make src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/example /<>/build/userversion /<>/build/userversion/src/Alpha_complex/example /<>/build/userversion/src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/build.make src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/build make[4]: Entering directory 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-I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/Weighted_alpha_complex_3d_from_points.cpp.o -MF CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/Weighted_alpha_complex_3d_from_points.cpp.o.d -o CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/Weighted_alpha_complex_3d_from_points.cpp.o -c /<>/src/Alpha_complex/example/Weighted_alpha_complex_3d_from_points.cpp [ 6%] Linking CXX executable Alpha_complex_example_weighted_3d_from_points cd /<>/build/userversion/src/Alpha_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Alpha_complex_example_weighted_3d_from_points.dir/Weighted_alpha_complex_3d_from_points.cpp.o -o Alpha_complex_example_weighted_3d_from_points /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 6%] Built target Alpha_complex_example_weighted_3d_from_points make -f src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_3d_from_points.dir/build.make src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_3d_from_points.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/example /<>/build/userversion 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-I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_3d_from_points.dir/Alpha_complex_3d_from_points.cpp.o -MF CMakeFiles/Alpha_complex_example_3d_from_points.dir/Alpha_complex_3d_from_points.cpp.o.d -o CMakeFiles/Alpha_complex_example_3d_from_points.dir/Alpha_complex_3d_from_points.cpp.o -c /<>/src/Alpha_complex/example/Alpha_complex_3d_from_points.cpp [ 6%] Linking CXX executable Alpha_complex_example_3d_from_points cd /<>/build/userversion/src/Alpha_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alpha_complex_example_3d_from_points.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Alpha_complex_example_3d_from_points.dir/Alpha_complex_3d_from_points.cpp.o -o Alpha_complex_example_3d_from_points /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 6%] Built target Alpha_complex_example_3d_from_points make -f src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_fast_from_off.dir/build.make 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src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_fast_from_off.dir/Fast_alpha_complex_from_off.cpp.o -MF CMakeFiles/Alpha_complex_example_fast_from_off.dir/Fast_alpha_complex_from_off.cpp.o.d -o CMakeFiles/Alpha_complex_example_fast_from_off.dir/Fast_alpha_complex_from_off.cpp.o -c /<>/src/Alpha_complex/example/Fast_alpha_complex_from_off.cpp [ 7%] Linking CXX executable Alpha_complex_example_fast_from_off cd /<>/build/userversion/src/Alpha_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alpha_complex_example_fast_from_off.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Alpha_complex_example_fast_from_off.dir/Fast_alpha_complex_from_off.cpp.o -o Alpha_complex_example_fast_from_off /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 7%] Built target Alpha_complex_example_fast_from_off make -f src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_off.dir/build.make src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_off.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/example /<>/build/userversion /<>/build/userversion/src/Alpha_complex/example /<>/build/userversion/src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_off.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_off.dir/build.make src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_off.dir/build make[4]: Entering directory '/<>/build/userversion' [ 7%] Building CXX object src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_off.dir/Alpha_complex_from_off.cpp.o cd /<>/build/userversion/src/Alpha_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_off.dir/Alpha_complex_from_off.cpp.o -MF CMakeFiles/Alpha_complex_example_from_off.dir/Alpha_complex_from_off.cpp.o.d -o CMakeFiles/Alpha_complex_example_from_off.dir/Alpha_complex_from_off.cpp.o -c /<>/src/Alpha_complex/example/Alpha_complex_from_off.cpp [ 8%] Linking CXX executable Alpha_complex_example_from_off cd /<>/build/userversion/src/Alpha_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alpha_complex_example_from_off.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now 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'/<>/build/userversion' make -f src/Alpha_complex/example/CMakeFiles/Weighted_alpha_complex_example_from_points.dir/build.make src/Alpha_complex/example/CMakeFiles/Weighted_alpha_complex_example_from_points.dir/build make[4]: Entering directory '/<>/build/userversion' [ 9%] Building CXX object src/Alpha_complex/example/CMakeFiles/Weighted_alpha_complex_example_from_points.dir/Weighted_alpha_complex_from_points.cpp.o cd /<>/build/userversion/src/Alpha_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/example/CMakeFiles/Weighted_alpha_complex_example_from_points.dir/Weighted_alpha_complex_from_points.cpp.o -MF CMakeFiles/Weighted_alpha_complex_example_from_points.dir/Weighted_alpha_complex_from_points.cpp.o.d -o CMakeFiles/Weighted_alpha_complex_example_from_points.dir/Weighted_alpha_complex_from_points.cpp.o -c /<>/src/Alpha_complex/example/Weighted_alpha_complex_from_points.cpp [ 9%] Linking CXX executable Weighted_alpha_complex_example_from_points cd /<>/build/userversion/src/Alpha_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Weighted_alpha_complex_example_from_points.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Weighted_alpha_complex_example_from_points.dir/Weighted_alpha_complex_from_points.cpp.o -o Weighted_alpha_complex_example_from_points /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 9%] Built target Weighted_alpha_complex_example_from_points make -f src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_points.dir/build.make src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_points.dir/depend make[4]: Entering directory 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-I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/example/CMakeFiles/Alpha_complex_example_from_points.dir/Alpha_complex_from_points.cpp.o -MF 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-DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Alpha_complex_test_unit.dir/Alpha_complex_unit_test.cpp.o -MF CMakeFiles/Alpha_complex_test_unit.dir/Alpha_complex_unit_test.cpp.o.d -o CMakeFiles/Alpha_complex_test_unit.dir/Alpha_complex_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Alpha_complex_unit_test.cpp [ 9%] Linking CXX executable Alpha_complex_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alpha_complex_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Alpha_complex_test_unit.dir/Alpha_complex_unit_test.cpp.o -o Alpha_complex_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 9%] Built target Alpha_complex_test_unit make -f src/Alpha_complex/test/CMakeFiles/Delaunay_complex_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Delaunay_complex_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Delaunay_complex_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Delaunay_complex_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Delaunay_complex_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 9%] Building CXX object 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-I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Delaunay_complex_test_unit.dir/Delaunay_complex_unit_test.cpp.o -MF CMakeFiles/Delaunay_complex_test_unit.dir/Delaunay_complex_unit_test.cpp.o.d -o CMakeFiles/Delaunay_complex_test_unit.dir/Delaunay_complex_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Delaunay_complex_unit_test.cpp [ 10%] Linking CXX executable Delaunay_complex_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Delaunay_complex_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Delaunay_complex_test_unit.dir/Delaunay_complex_unit_test.cpp.o -o Delaunay_complex_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 10%] Built target Delaunay_complex_test_unit make -f src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 10%] Building CXX object src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/Weighted_alpha_complex_3d_unit_test.cpp.o cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/Weighted_alpha_complex_3d_unit_test.cpp.o -MF CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/Weighted_alpha_complex_3d_unit_test.cpp.o.d -o CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/Weighted_alpha_complex_3d_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Weighted_alpha_complex_3d_unit_test.cpp [ 10%] Linking CXX executable Weighted_alpha_complex_3d_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Weighted_alpha_complex_3d_test_unit.dir/Weighted_alpha_complex_3d_unit_test.cpp.o -o Weighted_alpha_complex_3d_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 10%] Built target Weighted_alpha_complex_3d_test_unit make -f src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 10%] Building CXX object src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_test_unit.dir/Weighted_alpha_complex_unit_test.cpp.o cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_test_unit.dir/Weighted_alpha_complex_unit_test.cpp.o -MF CMakeFiles/Weighted_alpha_complex_test_unit.dir/Weighted_alpha_complex_unit_test.cpp.o.d -o CMakeFiles/Weighted_alpha_complex_test_unit.dir/Weighted_alpha_complex_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Weighted_alpha_complex_unit_test.cpp [ 10%] Linking CXX executable Weighted_alpha_complex_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Weighted_alpha_complex_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Weighted_alpha_complex_test_unit.dir/Weighted_alpha_complex_unit_test.cpp.o -o Weighted_alpha_complex_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 10%] Built target Weighted_alpha_complex_test_unit make -f src/Alpha_complex/test/CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 10%] Building CXX object src/Alpha_complex/test/CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/Periodic_alpha_complex_3d_unit_test.cpp.o cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/Periodic_alpha_complex_3d_unit_test.cpp.o -MF CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/Periodic_alpha_complex_3d_unit_test.cpp.o.d -o CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/Periodic_alpha_complex_3d_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Periodic_alpha_complex_3d_unit_test.cpp [ 10%] Linking CXX executable Periodic_alpha_complex_3d_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Periodic_alpha_complex_3d_test_unit.dir/Periodic_alpha_complex_3d_unit_test.cpp.o -o Periodic_alpha_complex_3d_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 10%] Built target Periodic_alpha_complex_3d_test_unit make -f src/Alpha_complex/test/CMakeFiles/Alpha_kernel_d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Alpha_kernel_d_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Alpha_kernel_d_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Alpha_kernel_d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Alpha_kernel_d_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 11%] Building CXX object src/Alpha_complex/test/CMakeFiles/Alpha_kernel_d_test_unit.dir/Alpha_kernel_d_unit_test.cpp.o cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Alpha_kernel_d_test_unit.dir/Alpha_kernel_d_unit_test.cpp.o -MF CMakeFiles/Alpha_kernel_d_test_unit.dir/Alpha_kernel_d_unit_test.cpp.o.d -o CMakeFiles/Alpha_kernel_d_test_unit.dir/Alpha_kernel_d_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Alpha_kernel_d_unit_test.cpp [ 11%] Linking CXX executable Alpha_kernel_d_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alpha_kernel_d_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Alpha_kernel_d_test_unit.dir/Alpha_kernel_d_unit_test.cpp.o -o Alpha_kernel_d_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 11%] Built target Alpha_kernel_d_test_unit make -f src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 11%] Building CXX object src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/Weighted_alpha_complex_non_visible_points_unit_test.cpp.o cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/Weighted_alpha_complex_non_visible_points_unit_test.cpp.o -MF CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/Weighted_alpha_complex_non_visible_points_unit_test.cpp.o.d -o CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/Weighted_alpha_complex_non_visible_points_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Weighted_alpha_complex_non_visible_points_unit_test.cpp [ 12%] Linking CXX executable Weighted_alpha_complex_non_visible_points_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Weighted_alpha_complex_non_visible_points_test_unit.dir/Weighted_alpha_complex_non_visible_points_unit_test.cpp.o -o Weighted_alpha_complex_non_visible_points_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 12%] Built target Weighted_alpha_complex_non_visible_points_test_unit make -f src/Alpha_complex/test/CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 13%] Building CXX object src/Alpha_complex/test/CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/Weighted_periodic_alpha_complex_3d_unit_test.cpp.o cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/Weighted_periodic_alpha_complex_3d_unit_test.cpp.o -MF CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/Weighted_periodic_alpha_complex_3d_unit_test.cpp.o.d -o CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/Weighted_periodic_alpha_complex_3d_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Weighted_periodic_alpha_complex_3d_unit_test.cpp [ 13%] Linking CXX executable Weighted_periodic_alpha_complex_3d_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Weighted_periodic_alpha_complex_3d_test_unit.dir/Weighted_periodic_alpha_complex_3d_unit_test.cpp.o -o Weighted_periodic_alpha_complex_3d_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 13%] Built target Weighted_periodic_alpha_complex_3d_test_unit make -f src/Alpha_complex/test/CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test /<>/build/userversion/src/Alpha_complex/test/CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Alpha_complex/test/CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 13%] Building CXX object src/Alpha_complex/test/CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/Zero_weighted_alpha_complex_unit_test.cpp.o cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/Zero_weighted_alpha_complex_unit_test.cpp.o -MF CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/Zero_weighted_alpha_complex_unit_test.cpp.o.d -o CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/Zero_weighted_alpha_complex_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Zero_weighted_alpha_complex_unit_test.cpp [ 13%] Linking CXX executable Zero_weighted_alpha_complex_test_unit cd /<>/build/userversion/src/Alpha_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Zero_weighted_alpha_complex_test_unit.dir/Zero_weighted_alpha_complex_unit_test.cpp.o -o Zero_weighted_alpha_complex_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 13%] Built target Zero_weighted_alpha_complex_test_unit make -f src/Alpha_complex/test/CMakeFiles/Alpha_complex_3d_test_unit.dir/build.make src/Alpha_complex/test/CMakeFiles/Alpha_complex_3d_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Alpha_complex/test /<>/build/userversion /<>/build/userversion/src/Alpha_complex/test 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-I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/test/CMakeFiles/Alpha_complex_3d_test_unit.dir/Alpha_complex_3d_unit_test.cpp.o -MF CMakeFiles/Alpha_complex_3d_test_unit.dir/Alpha_complex_3d_unit_test.cpp.o.d -o CMakeFiles/Alpha_complex_3d_test_unit.dir/Alpha_complex_3d_unit_test.cpp.o -c /<>/src/Alpha_complex/test/Alpha_complex_3d_unit_test.cpp [ 14%] Linking CXX executable 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-DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/utilities/CMakeFiles/alpha_complex_3d_persistence.dir/alpha_complex_3d_persistence.cpp.o -MF 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src/Alpha_complex/utilities/CMakeFiles/alpha_complex_persistence.dir/alpha_complex_persistence.cpp.o cd /<>/build/userversion/src/Alpha_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Alpha_complex/utilities/CMakeFiles/alpha_complex_persistence.dir/alpha_complex_persistence.cpp.o -MF CMakeFiles/alpha_complex_persistence.dir/alpha_complex_persistence.cpp.o.d -o CMakeFiles/alpha_complex_persistence.dir/alpha_complex_persistence.cpp.o -c /<>/src/Alpha_complex/utilities/alpha_complex_persistence.cpp [ 15%] Linking CXX executable alpha_complex_persistence cd /<>/build/userversion/src/Alpha_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/alpha_complex_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/alpha_complex_persistence.dir/alpha_complex_persistence.cpp.o -o alpha_complex_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 15%] Built target alpha_complex_persistence make -f src/Bitmap_cubical_complex/example/CMakeFiles/Random_bitmap_cubical_complex.dir/build.make src/Bitmap_cubical_complex/example/CMakeFiles/Random_bitmap_cubical_complex.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bitmap_cubical_complex/example /<>/build/userversion /<>/build/userversion/src/Bitmap_cubical_complex/example /<>/build/userversion/src/Bitmap_cubical_complex/example/CMakeFiles/Random_bitmap_cubical_complex.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bitmap_cubical_complex/example/CMakeFiles/Random_bitmap_cubical_complex.dir/build.make src/Bitmap_cubical_complex/example/CMakeFiles/Random_bitmap_cubical_complex.dir/build make[4]: Entering directory '/<>/build/userversion' [ 15%] Building CXX object src/Bitmap_cubical_complex/example/CMakeFiles/Random_bitmap_cubical_complex.dir/Random_bitmap_cubical_complex.cpp.o cd /<>/build/userversion/src/Bitmap_cubical_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bitmap_cubical_complex/example/CMakeFiles/Random_bitmap_cubical_complex.dir/Random_bitmap_cubical_complex.cpp.o -MF CMakeFiles/Random_bitmap_cubical_complex.dir/Random_bitmap_cubical_complex.cpp.o.d -o CMakeFiles/Random_bitmap_cubical_complex.dir/Random_bitmap_cubical_complex.cpp.o -c /<>/src/Bitmap_cubical_complex/example/Random_bitmap_cubical_complex.cpp [ 16%] Linking CXX executable Random_bitmap_cubical_complex cd /<>/build/userversion/src/Bitmap_cubical_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Random_bitmap_cubical_complex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Random_bitmap_cubical_complex.dir/Random_bitmap_cubical_complex.cpp.o -o Random_bitmap_cubical_complex /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 16%] Built target Random_bitmap_cubical_complex make -f src/Bitmap_cubical_complex/test/CMakeFiles/Bitmap_cubical_complex_test_unit.dir/build.make src/Bitmap_cubical_complex/test/CMakeFiles/Bitmap_cubical_complex_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bitmap_cubical_complex/test /<>/build/userversion /<>/build/userversion/src/Bitmap_cubical_complex/test /<>/build/userversion/src/Bitmap_cubical_complex/test/CMakeFiles/Bitmap_cubical_complex_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bitmap_cubical_complex/test/CMakeFiles/Bitmap_cubical_complex_test_unit.dir/build.make src/Bitmap_cubical_complex/test/CMakeFiles/Bitmap_cubical_complex_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 16%] Building CXX object src/Bitmap_cubical_complex/test/CMakeFiles/Bitmap_cubical_complex_test_unit.dir/Bitmap_test.cpp.o cd /<>/build/userversion/src/Bitmap_cubical_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bitmap_cubical_complex/test/CMakeFiles/Bitmap_cubical_complex_test_unit.dir/Bitmap_test.cpp.o -MF CMakeFiles/Bitmap_cubical_complex_test_unit.dir/Bitmap_test.cpp.o.d -o CMakeFiles/Bitmap_cubical_complex_test_unit.dir/Bitmap_test.cpp.o -c /<>/src/Bitmap_cubical_complex/test/Bitmap_test.cpp [ 17%] Linking CXX executable Bitmap_cubical_complex_test_unit cd /<>/build/userversion/src/Bitmap_cubical_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bitmap_cubical_complex_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Bitmap_cubical_complex_test_unit.dir/Bitmap_test.cpp.o -o Bitmap_cubical_complex_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 17%] Built target Bitmap_cubical_complex_test_unit make -f src/Bitmap_cubical_complex/utilities/CMakeFiles/periodic_cubical_complex_persistence.dir/build.make src/Bitmap_cubical_complex/utilities/CMakeFiles/periodic_cubical_complex_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bitmap_cubical_complex/utilities /<>/build/userversion /<>/build/userversion/src/Bitmap_cubical_complex/utilities /<>/build/userversion/src/Bitmap_cubical_complex/utilities/CMakeFiles/periodic_cubical_complex_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bitmap_cubical_complex/utilities/CMakeFiles/periodic_cubical_complex_persistence.dir/build.make src/Bitmap_cubical_complex/utilities/CMakeFiles/periodic_cubical_complex_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 17%] Building CXX object src/Bitmap_cubical_complex/utilities/CMakeFiles/periodic_cubical_complex_persistence.dir/periodic_cubical_complex_persistence.cpp.o cd /<>/build/userversion/src/Bitmap_cubical_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bitmap_cubical_complex/utilities/CMakeFiles/periodic_cubical_complex_persistence.dir/periodic_cubical_complex_persistence.cpp.o -MF CMakeFiles/periodic_cubical_complex_persistence.dir/periodic_cubical_complex_persistence.cpp.o.d -o CMakeFiles/periodic_cubical_complex_persistence.dir/periodic_cubical_complex_persistence.cpp.o -c /<>/src/Bitmap_cubical_complex/utilities/periodic_cubical_complex_persistence.cpp [ 18%] Linking CXX executable periodic_cubical_complex_persistence cd /<>/build/userversion/src/Bitmap_cubical_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/periodic_cubical_complex_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/periodic_cubical_complex_persistence.dir/periodic_cubical_complex_persistence.cpp.o -o periodic_cubical_complex_persistence /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 18%] Built target periodic_cubical_complex_persistence make -f src/Bitmap_cubical_complex/utilities/CMakeFiles/cubical_complex_persistence.dir/build.make src/Bitmap_cubical_complex/utilities/CMakeFiles/cubical_complex_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bitmap_cubical_complex/utilities /<>/build/userversion /<>/build/userversion/src/Bitmap_cubical_complex/utilities /<>/build/userversion/src/Bitmap_cubical_complex/utilities/CMakeFiles/cubical_complex_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bitmap_cubical_complex/utilities/CMakeFiles/cubical_complex_persistence.dir/build.make src/Bitmap_cubical_complex/utilities/CMakeFiles/cubical_complex_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 18%] Building CXX object src/Bitmap_cubical_complex/utilities/CMakeFiles/cubical_complex_persistence.dir/cubical_complex_persistence.cpp.o cd /<>/build/userversion/src/Bitmap_cubical_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bitmap_cubical_complex/utilities/CMakeFiles/cubical_complex_persistence.dir/cubical_complex_persistence.cpp.o -MF CMakeFiles/cubical_complex_persistence.dir/cubical_complex_persistence.cpp.o.d -o CMakeFiles/cubical_complex_persistence.dir/cubical_complex_persistence.cpp.o -c /<>/src/Bitmap_cubical_complex/utilities/cubical_complex_persistence.cpp [ 19%] Linking CXX executable cubical_complex_persistence cd /<>/build/userversion/src/Bitmap_cubical_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/cubical_complex_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/cubical_complex_persistence.dir/cubical_complex_persistence.cpp.o -o cubical_complex_persistence /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 19%] Built target cubical_complex_persistence make -f src/Bottleneck_distance/benchmark/CMakeFiles/bottleneck_chrono.dir/build.make src/Bottleneck_distance/benchmark/CMakeFiles/bottleneck_chrono.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bottleneck_distance/benchmark /<>/build/userversion /<>/build/userversion/src/Bottleneck_distance/benchmark /<>/build/userversion/src/Bottleneck_distance/benchmark/CMakeFiles/bottleneck_chrono.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bottleneck_distance/benchmark/CMakeFiles/bottleneck_chrono.dir/build.make src/Bottleneck_distance/benchmark/CMakeFiles/bottleneck_chrono.dir/build make[4]: Entering directory '/<>/build/userversion' [ 19%] Building CXX object src/Bottleneck_distance/benchmark/CMakeFiles/bottleneck_chrono.dir/bottleneck_chrono.cpp.o cd /<>/build/userversion/src/Bottleneck_distance/benchmark && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bottleneck_distance/benchmark/CMakeFiles/bottleneck_chrono.dir/bottleneck_chrono.cpp.o -MF CMakeFiles/bottleneck_chrono.dir/bottleneck_chrono.cpp.o.d -o CMakeFiles/bottleneck_chrono.dir/bottleneck_chrono.cpp.o -c /<>/src/Bottleneck_distance/benchmark/bottleneck_chrono.cpp [ 20%] Linking CXX executable bottleneck_chrono cd /<>/build/userversion/src/Bottleneck_distance/benchmark && /usr/bin/cmake -E cmake_link_script CMakeFiles/bottleneck_chrono.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/bottleneck_chrono.dir/bottleneck_chrono.cpp.o -o bottleneck_chrono /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 20%] Built target bottleneck_chrono make -f src/Bottleneck_distance/example/CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/build.make src/Bottleneck_distance/example/CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bottleneck_distance/example /<>/build/userversion /<>/build/userversion/src/Bottleneck_distance/example /<>/build/userversion/src/Bottleneck_distance/example/CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bottleneck_distance/example/CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/build.make src/Bottleneck_distance/example/CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/build make[4]: Entering directory '/<>/build/userversion' [ 21%] Building CXX object src/Bottleneck_distance/example/CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/alpha_rips_persistence_bottleneck_distance.cpp.o cd /<>/build/userversion/src/Bottleneck_distance/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bottleneck_distance/example/CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/alpha_rips_persistence_bottleneck_distance.cpp.o -MF CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/alpha_rips_persistence_bottleneck_distance.cpp.o.d -o CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/alpha_rips_persistence_bottleneck_distance.cpp.o -c /<>/src/Bottleneck_distance/example/alpha_rips_persistence_bottleneck_distance.cpp [ 21%] Linking CXX executable alpha_rips_persistence_bottleneck_distance cd /<>/build/userversion/src/Bottleneck_distance/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/alpha_rips_persistence_bottleneck_distance.dir/alpha_rips_persistence_bottleneck_distance.cpp.o -o alpha_rips_persistence_bottleneck_distance /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 21%] Built target alpha_rips_persistence_bottleneck_distance make -f src/Bottleneck_distance/example/CMakeFiles/bottleneck_basic_example.dir/build.make src/Bottleneck_distance/example/CMakeFiles/bottleneck_basic_example.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bottleneck_distance/example /<>/build/userversion /<>/build/userversion/src/Bottleneck_distance/example /<>/build/userversion/src/Bottleneck_distance/example/CMakeFiles/bottleneck_basic_example.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bottleneck_distance/example/CMakeFiles/bottleneck_basic_example.dir/build.make src/Bottleneck_distance/example/CMakeFiles/bottleneck_basic_example.dir/build make[4]: Entering directory '/<>/build/userversion' [ 22%] Building CXX object src/Bottleneck_distance/example/CMakeFiles/bottleneck_basic_example.dir/bottleneck_basic_example.cpp.o cd /<>/build/userversion/src/Bottleneck_distance/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bottleneck_distance/example/CMakeFiles/bottleneck_basic_example.dir/bottleneck_basic_example.cpp.o -MF CMakeFiles/bottleneck_basic_example.dir/bottleneck_basic_example.cpp.o.d -o CMakeFiles/bottleneck_basic_example.dir/bottleneck_basic_example.cpp.o -c /<>/src/Bottleneck_distance/example/bottleneck_basic_example.cpp [ 22%] Linking CXX executable bottleneck_basic_example cd /<>/build/userversion/src/Bottleneck_distance/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/bottleneck_basic_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/bottleneck_basic_example.dir/bottleneck_basic_example.cpp.o -o bottleneck_basic_example /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 22%] Built target bottleneck_basic_example make -f src/Bottleneck_distance/test/CMakeFiles/Bottleneck_distance_test_unit.dir/build.make src/Bottleneck_distance/test/CMakeFiles/Bottleneck_distance_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bottleneck_distance/test /<>/build/userversion /<>/build/userversion/src/Bottleneck_distance/test /<>/build/userversion/src/Bottleneck_distance/test/CMakeFiles/Bottleneck_distance_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bottleneck_distance/test/CMakeFiles/Bottleneck_distance_test_unit.dir/build.make src/Bottleneck_distance/test/CMakeFiles/Bottleneck_distance_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 22%] Building CXX object src/Bottleneck_distance/test/CMakeFiles/Bottleneck_distance_test_unit.dir/bottleneck_unit_test.cpp.o cd /<>/build/userversion/src/Bottleneck_distance/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bottleneck_distance/test/CMakeFiles/Bottleneck_distance_test_unit.dir/bottleneck_unit_test.cpp.o -MF CMakeFiles/Bottleneck_distance_test_unit.dir/bottleneck_unit_test.cpp.o.d -o CMakeFiles/Bottleneck_distance_test_unit.dir/bottleneck_unit_test.cpp.o -c /<>/src/Bottleneck_distance/test/bottleneck_unit_test.cpp [ 22%] Linking CXX executable Bottleneck_distance_test_unit cd /<>/build/userversion/src/Bottleneck_distance/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bottleneck_distance_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Bottleneck_distance_test_unit.dir/bottleneck_unit_test.cpp.o -o Bottleneck_distance_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 22%] Built target Bottleneck_distance_test_unit make -f src/Bottleneck_distance/utilities/CMakeFiles/bottleneck_distance.dir/build.make src/Bottleneck_distance/utilities/CMakeFiles/bottleneck_distance.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Bottleneck_distance/utilities /<>/build/userversion /<>/build/userversion/src/Bottleneck_distance/utilities /<>/build/userversion/src/Bottleneck_distance/utilities/CMakeFiles/bottleneck_distance.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Bottleneck_distance/utilities/CMakeFiles/bottleneck_distance.dir/build.make src/Bottleneck_distance/utilities/CMakeFiles/bottleneck_distance.dir/build make[4]: Entering directory '/<>/build/userversion' [ 22%] Building CXX object src/Bottleneck_distance/utilities/CMakeFiles/bottleneck_distance.dir/bottleneck_distance.cpp.o cd /<>/build/userversion/src/Bottleneck_distance/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Bottleneck_distance/utilities/CMakeFiles/bottleneck_distance.dir/bottleneck_distance.cpp.o -MF CMakeFiles/bottleneck_distance.dir/bottleneck_distance.cpp.o.d -o CMakeFiles/bottleneck_distance.dir/bottleneck_distance.cpp.o -c /<>/src/Bottleneck_distance/utilities/bottleneck_distance.cpp [ 22%] Linking CXX executable bottleneck_distance cd /<>/build/userversion/src/Bottleneck_distance/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/bottleneck_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/bottleneck_distance.dir/bottleneck_distance.cpp.o -o bottleneck_distance /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 22%] Built target bottleneck_distance make -f src/Collapse/example/CMakeFiles/Edge_collapse_conserve_persistence.dir/build.make src/Collapse/example/CMakeFiles/Edge_collapse_conserve_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Collapse/example /<>/build/userversion /<>/build/userversion/src/Collapse/example /<>/build/userversion/src/Collapse/example/CMakeFiles/Edge_collapse_conserve_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Collapse/example/CMakeFiles/Edge_collapse_conserve_persistence.dir/build.make src/Collapse/example/CMakeFiles/Edge_collapse_conserve_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 22%] Building CXX object src/Collapse/example/CMakeFiles/Edge_collapse_conserve_persistence.dir/edge_collapse_conserve_persistence.cpp.o cd /<>/build/userversion/src/Collapse/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Collapse/example/CMakeFiles/Edge_collapse_conserve_persistence.dir/edge_collapse_conserve_persistence.cpp.o -MF CMakeFiles/Edge_collapse_conserve_persistence.dir/edge_collapse_conserve_persistence.cpp.o.d -o CMakeFiles/Edge_collapse_conserve_persistence.dir/edge_collapse_conserve_persistence.cpp.o -c /<>/src/Collapse/example/edge_collapse_conserve_persistence.cpp [ 22%] Linking CXX executable Edge_collapse_conserve_persistence cd /<>/build/userversion/src/Collapse/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Edge_collapse_conserve_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Edge_collapse_conserve_persistence.dir/edge_collapse_conserve_persistence.cpp.o -o Edge_collapse_conserve_persistence /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 22%] Built target Edge_collapse_conserve_persistence make -f src/Collapse/example/CMakeFiles/Edge_collapse_example_basic.dir/build.make src/Collapse/example/CMakeFiles/Edge_collapse_example_basic.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Collapse/example /<>/build/userversion /<>/build/userversion/src/Collapse/example /<>/build/userversion/src/Collapse/example/CMakeFiles/Edge_collapse_example_basic.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Collapse/example/CMakeFiles/Edge_collapse_example_basic.dir/build.make src/Collapse/example/CMakeFiles/Edge_collapse_example_basic.dir/build make[4]: Entering directory '/<>/build/userversion' [ 22%] Building CXX object src/Collapse/example/CMakeFiles/Edge_collapse_example_basic.dir/edge_collapse_basic_example.cpp.o cd /<>/build/userversion/src/Collapse/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Collapse/example/CMakeFiles/Edge_collapse_example_basic.dir/edge_collapse_basic_example.cpp.o -MF CMakeFiles/Edge_collapse_example_basic.dir/edge_collapse_basic_example.cpp.o.d -o CMakeFiles/Edge_collapse_example_basic.dir/edge_collapse_basic_example.cpp.o -c /<>/src/Collapse/example/edge_collapse_basic_example.cpp [ 23%] Linking CXX executable Edge_collapse_example_basic cd /<>/build/userversion/src/Collapse/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Edge_collapse_example_basic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Edge_collapse_example_basic.dir/edge_collapse_basic_example.cpp.o -o Edge_collapse_example_basic /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 23%] Built target Edge_collapse_example_basic make -f src/Collapse/test/CMakeFiles/Collapse_test_unit.dir/build.make src/Collapse/test/CMakeFiles/Collapse_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Collapse/test /<>/build/userversion /<>/build/userversion/src/Collapse/test /<>/build/userversion/src/Collapse/test/CMakeFiles/Collapse_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Collapse/test/CMakeFiles/Collapse_test_unit.dir/build.make src/Collapse/test/CMakeFiles/Collapse_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 23%] Building CXX object src/Collapse/test/CMakeFiles/Collapse_test_unit.dir/collapse_unit_test.cpp.o cd /<>/build/userversion/src/Collapse/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Collapse/test/CMakeFiles/Collapse_test_unit.dir/collapse_unit_test.cpp.o -MF CMakeFiles/Collapse_test_unit.dir/collapse_unit_test.cpp.o.d -o CMakeFiles/Collapse_test_unit.dir/collapse_unit_test.cpp.o -c /<>/src/Collapse/test/collapse_unit_test.cpp [ 24%] Linking CXX executable Collapse_test_unit cd /<>/build/userversion/src/Collapse/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Collapse_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Collapse_test_unit.dir/collapse_unit_test.cpp.o -o Collapse_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 24%] Built target Collapse_test_unit make -f src/Collapse/utilities/CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/build.make src/Collapse/utilities/CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Collapse/utilities /<>/build/userversion /<>/build/userversion/src/Collapse/utilities /<>/build/userversion/src/Collapse/utilities/CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Collapse/utilities/CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/build.make src/Collapse/utilities/CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 25%] Building CXX object src/Collapse/utilities/CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/distance_matrix_edge_collapse_rips_persistence.cpp.o cd /<>/build/userversion/src/Collapse/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Collapse/utilities/CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/distance_matrix_edge_collapse_rips_persistence.cpp.o -MF CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/distance_matrix_edge_collapse_rips_persistence.cpp.o.d -o CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/distance_matrix_edge_collapse_rips_persistence.cpp.o -c /<>/src/Collapse/utilities/distance_matrix_edge_collapse_rips_persistence.cpp [ 25%] Linking CXX executable distance_matrix_edge_collapse_rips_persistence cd /<>/build/userversion/src/Collapse/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/distance_matrix_edge_collapse_rips_persistence.dir/distance_matrix_edge_collapse_rips_persistence.cpp.o -o distance_matrix_edge_collapse_rips_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 25%] Built target distance_matrix_edge_collapse_rips_persistence make -f src/Collapse/utilities/CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/build.make src/Collapse/utilities/CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Collapse/utilities /<>/build/userversion /<>/build/userversion/src/Collapse/utilities /<>/build/userversion/src/Collapse/utilities/CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Collapse/utilities/CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/build.make src/Collapse/utilities/CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 25%] Building CXX object src/Collapse/utilities/CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/point_cloud_edge_collapse_rips_persistence.cpp.o cd /<>/build/userversion/src/Collapse/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Collapse/utilities/CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/point_cloud_edge_collapse_rips_persistence.cpp.o -MF CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/point_cloud_edge_collapse_rips_persistence.cpp.o.d -o CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/point_cloud_edge_collapse_rips_persistence.cpp.o -c /<>/src/Collapse/utilities/point_cloud_edge_collapse_rips_persistence.cpp [ 26%] Linking CXX executable point_cloud_edge_collapse_rips_persistence cd /<>/build/userversion/src/Collapse/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/point_cloud_edge_collapse_rips_persistence.dir/point_cloud_edge_collapse_rips_persistence.cpp.o -o point_cloud_edge_collapse_rips_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 26%] Built target point_cloud_edge_collapse_rips_persistence make -f src/Contraction/example/CMakeFiles/GarlandHeckbert.dir/build.make src/Contraction/example/CMakeFiles/GarlandHeckbert.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Contraction/example /<>/build/userversion /<>/build/userversion/src/Contraction/example /<>/build/userversion/src/Contraction/example/CMakeFiles/GarlandHeckbert.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Contraction/example/CMakeFiles/GarlandHeckbert.dir/build.make src/Contraction/example/CMakeFiles/GarlandHeckbert.dir/build make[4]: Entering directory '/<>/build/userversion' [ 27%] Building CXX object src/Contraction/example/CMakeFiles/GarlandHeckbert.dir/Garland_heckbert.cpp.o cd /<>/build/userversion/src/Contraction/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Contraction/example/CMakeFiles/GarlandHeckbert.dir/Garland_heckbert.cpp.o -MF CMakeFiles/GarlandHeckbert.dir/Garland_heckbert.cpp.o.d -o CMakeFiles/GarlandHeckbert.dir/Garland_heckbert.cpp.o -c /<>/src/Contraction/example/Garland_heckbert.cpp [ 27%] Linking CXX executable 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/<>/build/userversion/src/Contraction/example/CMakeFiles/RipsContraction.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Contraction/example/CMakeFiles/RipsContraction.dir/build.make src/Contraction/example/CMakeFiles/RipsContraction.dir/build make[4]: Entering directory '/<>/build/userversion' [ 28%] Building CXX object src/Contraction/example/CMakeFiles/RipsContraction.dir/Rips_contraction.cpp.o cd /<>/build/userversion/src/Contraction/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Contraction/example/CMakeFiles/RipsContraction.dir/Rips_contraction.cpp.o -MF CMakeFiles/RipsContraction.dir/Rips_contraction.cpp.o.d -o CMakeFiles/RipsContraction.dir/Rips_contraction.cpp.o -c /<>/src/Contraction/example/Rips_contraction.cpp [ 28%] Linking CXX executable RipsContraction cd /<>/build/userversion/src/Contraction/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/RipsContraction.dir/link.txt --verbose=1 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make -f src/Cech_complex/benchmark/CMakeFiles/cech_complex_benchmark.dir/build.make src/Cech_complex/benchmark/CMakeFiles/cech_complex_benchmark.dir/build make[4]: Entering directory '/<>/build/userversion' [ 29%] Building CXX object src/Cech_complex/benchmark/CMakeFiles/cech_complex_benchmark.dir/cech_complex_benchmark.cpp.o cd /<>/build/userversion/src/Cech_complex/benchmark && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Cech_complex/benchmark/CMakeFiles/cech_complex_benchmark.dir/cech_complex_benchmark.cpp.o -MF CMakeFiles/cech_complex_benchmark.dir/cech_complex_benchmark.cpp.o.d -o CMakeFiles/cech_complex_benchmark.dir/cech_complex_benchmark.cpp.o -c /<>/src/Cech_complex/benchmark/cech_complex_benchmark.cpp [ 29%] Linking CXX executable cech_complex_benchmark cd /<>/build/userversion/src/Cech_complex/benchmark && /usr/bin/cmake -E cmake_link_script CMakeFiles/cech_complex_benchmark.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/cech_complex_benchmark.dir/cech_complex_benchmark.cpp.o -o cech_complex_benchmark /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 29%] Built target cech_complex_benchmark make -f src/Cech_complex/example/CMakeFiles/Cech_complex_example_from_points.dir/build.make src/Cech_complex/example/CMakeFiles/Cech_complex_example_from_points.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Cech_complex/example /<>/build/userversion /<>/build/userversion/src/Cech_complex/example /<>/build/userversion/src/Cech_complex/example/CMakeFiles/Cech_complex_example_from_points.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Cech_complex/example/CMakeFiles/Cech_complex_example_from_points.dir/build.make src/Cech_complex/example/CMakeFiles/Cech_complex_example_from_points.dir/build make[4]: Entering directory '/<>/build/userversion' [ 29%] Building CXX object src/Cech_complex/example/CMakeFiles/Cech_complex_example_from_points.dir/cech_complex_example_from_points.cpp.o cd /<>/build/userversion/src/Cech_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Cech_complex/example/CMakeFiles/Cech_complex_example_from_points.dir/cech_complex_example_from_points.cpp.o -MF CMakeFiles/Cech_complex_example_from_points.dir/cech_complex_example_from_points.cpp.o.d -o CMakeFiles/Cech_complex_example_from_points.dir/cech_complex_example_from_points.cpp.o -c /<>/src/Cech_complex/example/cech_complex_example_from_points.cpp [ 30%] Linking CXX executable Cech_complex_example_from_points cd /<>/build/userversion/src/Cech_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cech_complex_example_from_points.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Cech_complex_example_from_points.dir/cech_complex_example_from_points.cpp.o -o Cech_complex_example_from_points /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 30%] Built target Cech_complex_example_from_points make -f src/Cech_complex/example/CMakeFiles/Cech_complex_example_step_by_step.dir/build.make src/Cech_complex/example/CMakeFiles/Cech_complex_example_step_by_step.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Cech_complex/example /<>/build/userversion /<>/build/userversion/src/Cech_complex/example /<>/build/userversion/src/Cech_complex/example/CMakeFiles/Cech_complex_example_step_by_step.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Cech_complex/example/CMakeFiles/Cech_complex_example_step_by_step.dir/build.make src/Cech_complex/example/CMakeFiles/Cech_complex_example_step_by_step.dir/build make[4]: Entering directory '/<>/build/userversion' [ 30%] Building CXX object src/Cech_complex/example/CMakeFiles/Cech_complex_example_step_by_step.dir/cech_complex_step_by_step.cpp.o cd /<>/build/userversion/src/Cech_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Cech_complex/example/CMakeFiles/Cech_complex_example_step_by_step.dir/cech_complex_step_by_step.cpp.o -MF CMakeFiles/Cech_complex_example_step_by_step.dir/cech_complex_step_by_step.cpp.o.d -o CMakeFiles/Cech_complex_example_step_by_step.dir/cech_complex_step_by_step.cpp.o -c /<>/src/Cech_complex/example/cech_complex_step_by_step.cpp [ 30%] Linking CXX executable Cech_complex_example_step_by_step cd /<>/build/userversion/src/Cech_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cech_complex_example_step_by_step.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Cech_complex_example_step_by_step.dir/cech_complex_step_by_step.cpp.o -o Cech_complex_example_step_by_step /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 30%] Built target Cech_complex_example_step_by_step make -f src/Cech_complex/test/CMakeFiles/Cech_complex_test_unit.dir/build.make src/Cech_complex/test/CMakeFiles/Cech_complex_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Cech_complex/test /<>/build/userversion /<>/build/userversion/src/Cech_complex/test /<>/build/userversion/src/Cech_complex/test/CMakeFiles/Cech_complex_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Cech_complex/test/CMakeFiles/Cech_complex_test_unit.dir/build.make src/Cech_complex/test/CMakeFiles/Cech_complex_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 31%] Building CXX object src/Cech_complex/test/CMakeFiles/Cech_complex_test_unit.dir/test_cech_complex.cpp.o cd /<>/build/userversion/src/Cech_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Cech_complex/test/CMakeFiles/Cech_complex_test_unit.dir/test_cech_complex.cpp.o -MF CMakeFiles/Cech_complex_test_unit.dir/test_cech_complex.cpp.o.d -o CMakeFiles/Cech_complex_test_unit.dir/test_cech_complex.cpp.o -c /<>/src/Cech_complex/test/test_cech_complex.cpp [ 31%] Linking CXX executable Cech_complex_test_unit cd /<>/build/userversion/src/Cech_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cech_complex_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Cech_complex_test_unit.dir/test_cech_complex.cpp.o -o Cech_complex_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 31%] Built target Cech_complex_test_unit make -f src/Cech_complex/utilities/CMakeFiles/cech_persistence.dir/build.make src/Cech_complex/utilities/CMakeFiles/cech_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Cech_complex/utilities /<>/build/userversion /<>/build/userversion/src/Cech_complex/utilities /<>/build/userversion/src/Cech_complex/utilities/CMakeFiles/cech_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Cech_complex/utilities/CMakeFiles/cech_persistence.dir/build.make src/Cech_complex/utilities/CMakeFiles/cech_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 31%] Building CXX object src/Cech_complex/utilities/CMakeFiles/cech_persistence.dir/cech_persistence.cpp.o cd /<>/build/userversion/src/Cech_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Cech_complex/utilities/CMakeFiles/cech_persistence.dir/cech_persistence.cpp.o -MF CMakeFiles/cech_persistence.dir/cech_persistence.cpp.o.d -o CMakeFiles/cech_persistence.dir/cech_persistence.cpp.o -c /<>/src/Cech_complex/utilities/cech_persistence.cpp [ 31%] Linking CXX executable cech_persistence cd /<>/build/userversion/src/Cech_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/cech_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/cech_persistence.dir/cech_persistence.cpp.o -o cech_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 31%] Built target cech_persistence make -f src/Persistence_representations/example/CMakeFiles/Sliced_Wasserstein.dir/build.make src/Persistence_representations/example/CMakeFiles/Sliced_Wasserstein.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/example /<>/build/userversion /<>/build/userversion/src/Persistence_representations/example /<>/build/userversion/src/Persistence_representations/example/CMakeFiles/Sliced_Wasserstein.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/example/CMakeFiles/Sliced_Wasserstein.dir/build.make src/Persistence_representations/example/CMakeFiles/Sliced_Wasserstein.dir/build make[4]: Entering directory '/<>/build/userversion' [ 32%] Building CXX object src/Persistence_representations/example/CMakeFiles/Sliced_Wasserstein.dir/sliced_wasserstein.cpp.o cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/example/CMakeFiles/Sliced_Wasserstein.dir/sliced_wasserstein.cpp.o -MF CMakeFiles/Sliced_Wasserstein.dir/sliced_wasserstein.cpp.o.d -o CMakeFiles/Sliced_Wasserstein.dir/sliced_wasserstein.cpp.o -c /<>/src/Persistence_representations/example/sliced_wasserstein.cpp [ 32%] Linking CXX executable Sliced_Wasserstein cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Sliced_Wasserstein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Sliced_Wasserstein.dir/sliced_wasserstein.cpp.o -o Sliced_Wasserstein /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 32%] Built target Sliced_Wasserstein make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_heat_maps.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_heat_maps.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/example /<>/build/userversion /<>/build/userversion/src/Persistence_representations/example /<>/build/userversion/src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_heat_maps.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_heat_maps.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_heat_maps.dir/build make[4]: Entering directory '/<>/build/userversion' [ 33%] Building CXX object src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_heat_maps.dir/persistence_heat_maps.cpp.o cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_heat_maps.dir/persistence_heat_maps.cpp.o -MF CMakeFiles/Persistence_representations_example_heat_maps.dir/persistence_heat_maps.cpp.o.d -o CMakeFiles/Persistence_representations_example_heat_maps.dir/persistence_heat_maps.cpp.o -c /<>/src/Persistence_representations/example/persistence_heat_maps.cpp [ 33%] Linking CXX executable Persistence_representations_example_heat_maps cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_representations_example_heat_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_representations_example_heat_maps.dir/persistence_heat_maps.cpp.o -o Persistence_representations_example_heat_maps /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 33%] Built target Persistence_representations_example_heat_maps make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_vectors.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_vectors.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/example /<>/build/userversion /<>/build/userversion/src/Persistence_representations/example /<>/build/userversion/src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_vectors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_vectors.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_vectors.dir/build make[4]: Entering directory '/<>/build/userversion' [ 33%] Building CXX object src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_vectors.dir/persistence_vectors.cpp.o cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_vectors.dir/persistence_vectors.cpp.o -MF CMakeFiles/Persistence_representations_example_vectors.dir/persistence_vectors.cpp.o.d -o CMakeFiles/Persistence_representations_example_vectors.dir/persistence_vectors.cpp.o -c /<>/src/Persistence_representations/example/persistence_vectors.cpp [ 33%] Linking CXX executable Persistence_representations_example_vectors cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_representations_example_vectors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_representations_example_vectors.dir/persistence_vectors.cpp.o -o Persistence_representations_example_vectors /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 33%] Built target Persistence_representations_example_vectors make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/example /<>/build/userversion /<>/build/userversion/src/Persistence_representations/example /<>/build/userversion/src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape.dir/build make[4]: Entering directory '/<>/build/userversion' [ 33%] Building CXX object src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape.dir/persistence_landscape.cpp.o cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape.dir/persistence_landscape.cpp.o -MF CMakeFiles/Persistence_representations_example_landscape.dir/persistence_landscape.cpp.o.d -o CMakeFiles/Persistence_representations_example_landscape.dir/persistence_landscape.cpp.o -c /<>/src/Persistence_representations/example/persistence_landscape.cpp [ 33%] Linking CXX executable Persistence_representations_example_landscape cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_representations_example_landscape.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_representations_example_landscape.dir/persistence_landscape.cpp.o -o Persistence_representations_example_landscape /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 33%] Built target Persistence_representations_example_landscape make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_intervals.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_intervals.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/example /<>/build/userversion /<>/build/userversion/src/Persistence_representations/example /<>/build/userversion/src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_intervals.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_intervals.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_intervals.dir/build make[4]: Entering directory '/<>/build/userversion' [ 33%] Building CXX object src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_intervals.dir/persistence_intervals.cpp.o cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_intervals.dir/persistence_intervals.cpp.o -MF CMakeFiles/Persistence_representations_example_intervals.dir/persistence_intervals.cpp.o.d -o CMakeFiles/Persistence_representations_example_intervals.dir/persistence_intervals.cpp.o -c /<>/src/Persistence_representations/example/persistence_intervals.cpp [ 34%] Linking CXX executable Persistence_representations_example_intervals cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_representations_example_intervals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_representations_example_intervals.dir/persistence_intervals.cpp.o -o Persistence_representations_example_intervals /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 34%] Built target Persistence_representations_example_intervals make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/example /<>/build/userversion /<>/build/userversion/src/Persistence_representations/example /<>/build/userversion/src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/build.make src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/build make[4]: Entering directory '/<>/build/userversion' [ 34%] Building CXX object src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/persistence_landscape_on_grid.cpp.o cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/example/CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/persistence_landscape_on_grid.cpp.o -MF CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/persistence_landscape_on_grid.cpp.o.d -o CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/persistence_landscape_on_grid.cpp.o -c /<>/src/Persistence_representations/example/persistence_landscape_on_grid.cpp [ 35%] Linking CXX executable Persistence_representations_example_landscape_on_grid cd /<>/build/userversion/src/Persistence_representations/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_representations_example_landscape_on_grid.dir/persistence_landscape_on_grid.cpp.o -o Persistence_representations_example_landscape_on_grid /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 35%] Built target Persistence_representations_example_landscape_on_grid make -f src/Persistence_representations/test/CMakeFiles/Persistence_intervals_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_intervals_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/Persistence_intervals_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/Persistence_intervals_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_intervals_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 35%] Building CXX object src/Persistence_representations/test/CMakeFiles/Persistence_intervals_test_unit.dir/persistence_intervals_test.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/Persistence_intervals_test_unit.dir/persistence_intervals_test.cpp.o -MF CMakeFiles/Persistence_intervals_test_unit.dir/persistence_intervals_test.cpp.o.d -o CMakeFiles/Persistence_intervals_test_unit.dir/persistence_intervals_test.cpp.o -c /<>/src/Persistence_representations/test/persistence_intervals_test.cpp [ 35%] Linking CXX executable Persistence_intervals_test_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_intervals_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_intervals_test_unit.dir/persistence_intervals_test.cpp.o -o Persistence_intervals_test_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 35%] Built target Persistence_intervals_test_unit make -f src/Persistence_representations/test/CMakeFiles/Vector_representation_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Vector_representation_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/Vector_representation_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/Vector_representation_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Vector_representation_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 35%] Building CXX object src/Persistence_representations/test/CMakeFiles/Vector_representation_test_unit.dir/vector_representation_test.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/Vector_representation_test_unit.dir/vector_representation_test.cpp.o -MF CMakeFiles/Vector_representation_test_unit.dir/vector_representation_test.cpp.o.d -o CMakeFiles/Vector_representation_test_unit.dir/vector_representation_test.cpp.o -c /<>/src/Persistence_representations/test/vector_representation_test.cpp [ 35%] Linking CXX executable Vector_representation_test_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Vector_representation_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Vector_representation_test_unit.dir/vector_representation_test.cpp.o -o Vector_representation_test_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 35%] Built target Vector_representation_test_unit make -f src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 35%] Building CXX object src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_test_unit.dir/persistence_lanscapes_test.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_test_unit.dir/persistence_lanscapes_test.cpp.o -MF CMakeFiles/Persistence_lanscapes_test_unit.dir/persistence_lanscapes_test.cpp.o.d -o CMakeFiles/Persistence_lanscapes_test_unit.dir/persistence_lanscapes_test.cpp.o -c /<>/src/Persistence_representations/test/persistence_lanscapes_test.cpp [ 35%] Linking CXX executable Persistence_lanscapes_test_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_lanscapes_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_lanscapes_test_unit.dir/persistence_lanscapes_test.cpp.o -o Persistence_lanscapes_test_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 35%] Built target Persistence_lanscapes_test_unit make -f src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 35%] Building CXX object src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/persistence_lanscapes_on_grid_test.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/persistence_lanscapes_on_grid_test.cpp.o -MF CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/persistence_lanscapes_on_grid_test.cpp.o.d -o CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/persistence_lanscapes_on_grid_test.cpp.o -c /<>/src/Persistence_representations/test/persistence_lanscapes_on_grid_test.cpp [ 36%] Linking CXX executable Persistence_lanscapes_on_grid_test_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_lanscapes_on_grid_test_unit.dir/persistence_lanscapes_on_grid_test.cpp.o -o Persistence_lanscapes_on_grid_test_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 36%] Built target Persistence_lanscapes_on_grid_test_unit make -f src/Persistence_representations/test/CMakeFiles/kernels_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/kernels_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/kernels_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/kernels_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/kernels_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 37%] Building CXX object src/Persistence_representations/test/CMakeFiles/kernels_unit.dir/kernels.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/kernels_unit.dir/kernels.cpp.o -MF CMakeFiles/kernels_unit.dir/kernels.cpp.o.d -o CMakeFiles/kernels_unit.dir/kernels.cpp.o -c /<>/src/Persistence_representations/test/kernels.cpp [ 37%] Linking CXX executable kernels_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/kernels_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/kernels_unit.dir/kernels.cpp.o -o kernels_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 37%] Built target kernels_unit make -f src/Persistence_representations/test/CMakeFiles/Persistence_heat_maps_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_heat_maps_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/Persistence_heat_maps_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/Persistence_heat_maps_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_heat_maps_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 38%] Building CXX object src/Persistence_representations/test/CMakeFiles/Persistence_heat_maps_test_unit.dir/persistence_heat_maps_test.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/Persistence_heat_maps_test_unit.dir/persistence_heat_maps_test.cpp.o -MF CMakeFiles/Persistence_heat_maps_test_unit.dir/persistence_heat_maps_test.cpp.o.d -o CMakeFiles/Persistence_heat_maps_test_unit.dir/persistence_heat_maps_test.cpp.o -c /<>/src/Persistence_representations/test/persistence_heat_maps_test.cpp /<>/src/Persistence_representations/test/persistence_heat_maps_test.cpp:81:86: warning: implicit conversion from 'double' to 'size_t' (aka 'unsigned long') changes value from 0.1 to 0 [-Wliteral-conversion] percentage_of_active.compute_percentage_of_active(to_compute_percentage_of_active, 0.1); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^~~ 1 warning generated. [ 38%] Linking CXX executable Persistence_heat_maps_test_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_heat_maps_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_heat_maps_test_unit.dir/persistence_heat_maps_test.cpp.o -o Persistence_heat_maps_test_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 38%] Built target Persistence_heat_maps_test_unit make -f src/Persistence_representations/test/CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 39%] Building CXX object src/Persistence_representations/test/CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/persistence_intervals_with_distances_test.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/persistence_intervals_with_distances_test.cpp.o -MF CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/persistence_intervals_with_distances_test.cpp.o.d -o CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/persistence_intervals_with_distances_test.cpp.o -c /<>/src/Persistence_representations/test/persistence_intervals_with_distances_test.cpp [ 39%] Linking CXX executable Persistence_intervals_with_distances_test_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistence_intervals_with_distances_test_unit.dir/persistence_intervals_with_distances_test.cpp.o -o Persistence_intervals_with_distances_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 39%] Built target Persistence_intervals_with_distances_test_unit make -f src/Persistence_representations/test/CMakeFiles/Read_persistence_from_file_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Read_persistence_from_file_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/test /<>/build/userversion /<>/build/userversion/src/Persistence_representations/test /<>/build/userversion/src/Persistence_representations/test/CMakeFiles/Read_persistence_from_file_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/test/CMakeFiles/Read_persistence_from_file_test_unit.dir/build.make src/Persistence_representations/test/CMakeFiles/Read_persistence_from_file_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 39%] Building CXX object src/Persistence_representations/test/CMakeFiles/Read_persistence_from_file_test_unit.dir/read_persistence_from_file_test.cpp.o cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/test/CMakeFiles/Read_persistence_from_file_test_unit.dir/read_persistence_from_file_test.cpp.o -MF CMakeFiles/Read_persistence_from_file_test_unit.dir/read_persistence_from_file_test.cpp.o.d -o CMakeFiles/Read_persistence_from_file_test_unit.dir/read_persistence_from_file_test.cpp.o -c /<>/src/Persistence_representations/test/read_persistence_from_file_test.cpp [ 39%] Linking CXX executable Read_persistence_from_file_test_unit cd /<>/build/userversion/src/Persistence_representations/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Read_persistence_from_file_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Read_persistence_from_file_test_unit.dir/read_persistence_from_file_test.cpp.o -o Read_persistence_from_file_test_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 39%] Built target Read_persistence_from_file_test_unit make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_pssk.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_pssk.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_pssk.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_pssk.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_pssk.dir/build make[4]: Entering directory '/<>/build/userversion' [ 39%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_pssk.dir/create_pssk.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_pssk.dir/create_pssk.cpp.o -MF CMakeFiles/create_pssk.dir/create_pssk.cpp.o.d -o CMakeFiles/create_pssk.dir/create_pssk.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp [ 39%] Linking CXX executable create_pssk cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_pssk.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_pssk.dir/create_pssk.cpp.o -o create_pssk /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 39%] Built target create_pssk make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 39%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp.o -MF CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp.o.d -o CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp [ 39%] Linking CXX executable create_p_h_m_weighted_by_arctan_of_their_persistence cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_p_h_m_weighted_by_arctan_of_their_persistence.dir/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp.o -o create_p_h_m_weighted_by_arctan_of_their_persistence /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 39%] Built target create_p_h_m_weighted_by_arctan_of_their_persistence make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/build make[4]: Entering directory '/<>/build/userversion' [ 39%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/compute_scalar_product_of_persistence_heat_maps.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/compute_scalar_product_of_persistence_heat_maps.cpp.o -MF CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/compute_scalar_product_of_persistence_heat_maps.cpp.o.d -o CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/compute_scalar_product_of_persistence_heat_maps.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/compute_scalar_product_of_persistence_heat_maps.cpp [ 40%] Linking CXX executable compute_scalar_product_of_persistence_heat_maps cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_scalar_product_of_persistence_heat_maps.dir/compute_scalar_product_of_persistence_heat_maps.cpp.o -o compute_scalar_product_of_persistence_heat_maps /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 40%] Built target compute_scalar_product_of_persistence_heat_maps make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/plot_persistence_heat_map.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/plot_persistence_heat_map.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/plot_persistence_heat_map.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/plot_persistence_heat_map.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/plot_persistence_heat_map.dir/build make[4]: Entering directory '/<>/build/userversion' [ 41%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/plot_persistence_heat_map.dir/plot_persistence_heat_map.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/plot_persistence_heat_map.dir/plot_persistence_heat_map.cpp.o -MF CMakeFiles/plot_persistence_heat_map.dir/plot_persistence_heat_map.cpp.o.d -o CMakeFiles/plot_persistence_heat_map.dir/plot_persistence_heat_map.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp [ 41%] Linking CXX executable plot_persistence_heat_map cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/plot_persistence_heat_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plot_persistence_heat_map.dir/plot_persistence_heat_map.cpp.o -o plot_persistence_heat_map /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 41%] Built target plot_persistence_heat_map make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/average_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/average_persistence_heat_maps.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/average_persistence_heat_maps.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/average_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/average_persistence_heat_maps.dir/build make[4]: Entering directory '/<>/build/userversion' [ 42%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/average_persistence_heat_maps.dir/average_persistence_heat_maps.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/average_persistence_heat_maps.dir/average_persistence_heat_maps.cpp.o -MF CMakeFiles/average_persistence_heat_maps.dir/average_persistence_heat_maps.cpp.o.d -o CMakeFiles/average_persistence_heat_maps.dir/average_persistence_heat_maps.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/average_persistence_heat_maps.cpp [ 42%] Linking CXX executable average_persistence_heat_maps cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_persistence_heat_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/average_persistence_heat_maps.dir/average_persistence_heat_maps.cpp.o -o average_persistence_heat_maps /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 42%] Built target average_persistence_heat_maps make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/build make[4]: Entering directory '/<>/build/userversion' [ 42%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/create_p_h_m_weighted_by_distance_from_diagonal.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/create_p_h_m_weighted_by_distance_from_diagonal.cpp.o -MF CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/create_p_h_m_weighted_by_distance_from_diagonal.cpp.o.d -o CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/create_p_h_m_weighted_by_distance_from_diagonal.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp [ 43%] Linking CXX executable create_p_h_m_weighted_by_distance_from_diagonal cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_p_h_m_weighted_by_distance_from_diagonal.dir/create_p_h_m_weighted_by_distance_from_diagonal.cpp.o -o create_p_h_m_weighted_by_distance_from_diagonal /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 43%] Built target create_p_h_m_weighted_by_distance_from_diagonal make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_distance_of_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_distance_of_persistence_heat_maps.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_distance_of_persistence_heat_maps.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_distance_of_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_distance_of_persistence_heat_maps.dir/build make[4]: Entering directory '/<>/build/userversion' [ 43%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_distance_of_persistence_heat_maps.dir/compute_distance_of_persistence_heat_maps.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/compute_distance_of_persistence_heat_maps.dir/compute_distance_of_persistence_heat_maps.cpp.o -MF CMakeFiles/compute_distance_of_persistence_heat_maps.dir/compute_distance_of_persistence_heat_maps.cpp.o.d -o CMakeFiles/compute_distance_of_persistence_heat_maps.dir/compute_distance_of_persistence_heat_maps.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp [ 44%] Linking CXX executable compute_distance_of_persistence_heat_maps cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance_of_persistence_heat_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_distance_of_persistence_heat_maps.dir/compute_distance_of_persistence_heat_maps.cpp.o -o compute_distance_of_persistence_heat_maps /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 44%] Built target compute_distance_of_persistence_heat_maps make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/build make[4]: Entering directory '/<>/build/userversion' [ 44%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/create_p_h_m_weighted_by_squared_diag_distance.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/create_p_h_m_weighted_by_squared_diag_distance.cpp.o -MF CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/create_p_h_m_weighted_by_squared_diag_distance.cpp.o.d -o CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/create_p_h_m_weighted_by_squared_diag_distance.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp [ 44%] Linking CXX executable create_p_h_m_weighted_by_squared_diag_distance cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_p_h_m_weighted_by_squared_diag_distance.dir/create_p_h_m_weighted_by_squared_diag_distance.cpp.o -o create_p_h_m_weighted_by_squared_diag_distance /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 44%] Built target create_p_h_m_weighted_by_squared_diag_distance make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_persistence_heat_maps.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_persistence_heat_maps.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_persistence_heat_maps.dir/build.make src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_persistence_heat_maps.dir/build make[4]: Entering directory '/<>/build/userversion' [ 45%] Building CXX object src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_persistence_heat_maps.dir/create_persistence_heat_maps.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_heat_maps/CMakeFiles/create_persistence_heat_maps.dir/create_persistence_heat_maps.cpp.o -MF CMakeFiles/create_persistence_heat_maps.dir/create_persistence_heat_maps.cpp.o.d -o CMakeFiles/create_persistence_heat_maps.dir/create_persistence_heat_maps.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp [ 45%] Linking CXX executable create_persistence_heat_maps cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_heat_maps && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_persistence_heat_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_persistence_heat_maps.dir/create_persistence_heat_maps.cpp.o -o create_persistence_heat_maps /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 45%] Built target create_persistence_heat_maps make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_bottleneck_distance.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_bottleneck_distance.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_bottleneck_distance.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_bottleneck_distance.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_bottleneck_distance.dir/build make[4]: Entering directory '/<>/build/userversion' [ 46%] Building CXX object src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_bottleneck_distance.dir/compute_bottleneck_distance.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_bottleneck_distance.dir/compute_bottleneck_distance.cpp.o -MF CMakeFiles/compute_bottleneck_distance.dir/compute_bottleneck_distance.cpp.o.d -o CMakeFiles/compute_bottleneck_distance.dir/compute_bottleneck_distance.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp [ 46%] Linking CXX executable compute_bottleneck_distance cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_bottleneck_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_bottleneck_distance.dir/compute_bottleneck_distance.cpp.o -o compute_bottleneck_distance /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 46%] Built target compute_bottleneck_distance make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_number_of_dominant_intervals.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_number_of_dominant_intervals.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_number_of_dominant_intervals.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_number_of_dominant_intervals.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_number_of_dominant_intervals.dir/build make[4]: Entering directory '/<>/build/userversion' [ 47%] Building CXX object src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_number_of_dominant_intervals.dir/compute_number_of_dominant_intervals.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_number_of_dominant_intervals.dir/compute_number_of_dominant_intervals.cpp.o -MF CMakeFiles/compute_number_of_dominant_intervals.dir/compute_number_of_dominant_intervals.cpp.o.d -o CMakeFiles/compute_number_of_dominant_intervals.dir/compute_number_of_dominant_intervals.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_intervals/compute_number_of_dominant_intervals.cpp [ 47%] Linking CXX executable compute_number_of_dominant_intervals cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_number_of_dominant_intervals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_number_of_dominant_intervals.dir/compute_number_of_dominant_intervals.cpp.o -o compute_number_of_dominant_intervals /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 47%] Built target compute_number_of_dominant_intervals make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/build make[4]: Entering directory '/<>/build/userversion' [ 47%] Building CXX object src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/compute_birth_death_range_in_persistence_diagram.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/compute_birth_death_range_in_persistence_diagram.cpp.o -MF CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/compute_birth_death_range_in_persistence_diagram.cpp.o.d -o CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/compute_birth_death_range_in_persistence_diagram.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_intervals/compute_birth_death_range_in_persistence_diagram.cpp [ 47%] Linking CXX executable compute_birth_death_range_in_persistence_diagram cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_birth_death_range_in_persistence_diagram.dir/compute_birth_death_range_in_persistence_diagram.cpp.o -o compute_birth_death_range_in_persistence_diagram /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 47%] Built target compute_birth_death_range_in_persistence_diagram make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_Betti_numbers.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_Betti_numbers.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_Betti_numbers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_Betti_numbers.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_Betti_numbers.dir/build make[4]: Entering directory '/<>/build/userversion' [ 47%] Building CXX object src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_Betti_numbers.dir/plot_persistence_Betti_numbers.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_Betti_numbers.dir/plot_persistence_Betti_numbers.cpp.o -MF CMakeFiles/plot_persistence_Betti_numbers.dir/plot_persistence_Betti_numbers.cpp.o.d -o CMakeFiles/plot_persistence_Betti_numbers.dir/plot_persistence_Betti_numbers.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_intervals/plot_persistence_Betti_numbers.cpp [ 47%] Linking CXX executable plot_persistence_Betti_numbers cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/cmake -E cmake_link_script CMakeFiles/plot_persistence_Betti_numbers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plot_persistence_Betti_numbers.dir/plot_persistence_Betti_numbers.cpp.o -o plot_persistence_Betti_numbers /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 47%] Built target plot_persistence_Betti_numbers make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_intervals.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_intervals.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_intervals.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_intervals.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_intervals.dir/build make[4]: Entering directory '/<>/build/userversion' [ 47%] Building CXX object src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_intervals.dir/plot_persistence_intervals.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_persistence_intervals.dir/plot_persistence_intervals.cpp.o -MF CMakeFiles/plot_persistence_intervals.dir/plot_persistence_intervals.cpp.o.d -o CMakeFiles/plot_persistence_intervals.dir/plot_persistence_intervals.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_intervals/plot_persistence_intervals.cpp [ 47%] Linking CXX executable plot_persistence_intervals cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/cmake -E cmake_link_script CMakeFiles/plot_persistence_intervals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plot_persistence_intervals.dir/plot_persistence_intervals.cpp.o -o plot_persistence_intervals /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 47%] Built target plot_persistence_intervals make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_histogram_of_intervals_lengths.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_histogram_of_intervals_lengths.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_histogram_of_intervals_lengths.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_histogram_of_intervals_lengths.dir/build.make src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_histogram_of_intervals_lengths.dir/build make[4]: Entering directory '/<>/build/userversion' [ 47%] Building CXX object src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_histogram_of_intervals_lengths.dir/plot_histogram_of_intervals_lengths.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_intervals/CMakeFiles/plot_histogram_of_intervals_lengths.dir/plot_histogram_of_intervals_lengths.cpp.o -MF CMakeFiles/plot_histogram_of_intervals_lengths.dir/plot_histogram_of_intervals_lengths.cpp.o.d -o CMakeFiles/plot_histogram_of_intervals_lengths.dir/plot_histogram_of_intervals_lengths.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_intervals/plot_histogram_of_intervals_lengths.cpp [ 47%] Linking CXX executable plot_histogram_of_intervals_lengths cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_intervals && /usr/bin/cmake -E cmake_link_script CMakeFiles/plot_histogram_of_intervals_lengths.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plot_histogram_of_intervals_lengths.dir/plot_histogram_of_intervals_lengths.cpp.o -o plot_histogram_of_intervals_lengths /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 47%] Built target plot_histogram_of_intervals_lengths make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_scalar_product_of_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_scalar_product_of_landscapes.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_scalar_product_of_landscapes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_scalar_product_of_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_scalar_product_of_landscapes.dir/build make[4]: Entering directory '/<>/build/userversion' [ 47%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_scalar_product_of_landscapes.dir/compute_scalar_product_of_landscapes.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_scalar_product_of_landscapes.dir/compute_scalar_product_of_landscapes.cpp.o -MF CMakeFiles/compute_scalar_product_of_landscapes.dir/compute_scalar_product_of_landscapes.cpp.o.d -o CMakeFiles/compute_scalar_product_of_landscapes.dir/compute_scalar_product_of_landscapes.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes/compute_scalar_product_of_landscapes.cpp [ 48%] Linking CXX executable compute_scalar_product_of_landscapes cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_scalar_product_of_landscapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_scalar_product_of_landscapes.dir/compute_scalar_product_of_landscapes.cpp.o -o compute_scalar_product_of_landscapes /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 48%] Built target compute_scalar_product_of_landscapes make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_distance_of_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_distance_of_landscapes.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_distance_of_landscapes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_distance_of_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_distance_of_landscapes.dir/build make[4]: Entering directory '/<>/build/userversion' [ 48%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_distance_of_landscapes.dir/compute_distance_of_landscapes.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/compute_distance_of_landscapes.dir/compute_distance_of_landscapes.cpp.o -MF CMakeFiles/compute_distance_of_landscapes.dir/compute_distance_of_landscapes.cpp.o.d -o CMakeFiles/compute_distance_of_landscapes.dir/compute_distance_of_landscapes.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp [ 49%] Linking CXX executable compute_distance_of_landscapes cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance_of_landscapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_distance_of_landscapes.dir/compute_distance_of_landscapes.cpp.o -o compute_distance_of_landscapes /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 49%] Built target compute_distance_of_landscapes make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/plot_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/plot_landscapes.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/plot_landscapes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/plot_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/plot_landscapes.dir/build make[4]: Entering directory '/<>/build/userversion' [ 50%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/plot_landscapes.dir/plot_landscapes.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/plot_landscapes.dir/plot_landscapes.cpp.o -MF CMakeFiles/plot_landscapes.dir/plot_landscapes.cpp.o.d -o CMakeFiles/plot_landscapes.dir/plot_landscapes.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes/plot_landscapes.cpp [ 50%] Linking CXX executable plot_landscapes cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/cmake -E cmake_link_script CMakeFiles/plot_landscapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plot_landscapes.dir/plot_landscapes.cpp.o -o plot_landscapes /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 50%] Built target plot_landscapes make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/average_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/average_landscapes.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/average_landscapes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/average_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/average_landscapes.dir/build make[4]: Entering directory '/<>/build/userversion' [ 50%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/average_landscapes.dir/average_landscapes.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/average_landscapes.dir/average_landscapes.cpp.o -MF CMakeFiles/average_landscapes.dir/average_landscapes.cpp.o.d -o CMakeFiles/average_landscapes.dir/average_landscapes.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes/average_landscapes.cpp [ 51%] Linking CXX executable average_landscapes cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_landscapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/average_landscapes.dir/average_landscapes.cpp.o -o average_landscapes /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 51%] Built target average_landscapes make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/create_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/create_landscapes.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/create_landscapes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/create_landscapes.dir/build.make src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/create_landscapes.dir/build make[4]: Entering directory '/<>/build/userversion' [ 52%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/create_landscapes.dir/create_landscapes.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes/CMakeFiles/create_landscapes.dir/create_landscapes.cpp.o -MF CMakeFiles/create_landscapes.dir/create_landscapes.cpp.o.d -o CMakeFiles/create_landscapes.dir/create_landscapes.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes/create_landscapes.cpp [ 52%] Linking CXX executable create_landscapes cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_landscapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_landscapes.dir/create_landscapes.cpp.o -o create_landscapes /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 52%] Built target create_landscapes make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/build make[4]: Entering directory '/<>/build/userversion' [ 52%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/compute_scalar_product_of_landscapes_on_grid.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/compute_scalar_product_of_landscapes_on_grid.cpp.o -MF CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/compute_scalar_product_of_landscapes_on_grid.cpp.o.d -o CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/compute_scalar_product_of_landscapes_on_grid.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid/compute_scalar_product_of_landscapes_on_grid.cpp [ 52%] Linking CXX executable compute_scalar_product_of_landscapes_on_grid cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_scalar_product_of_landscapes_on_grid.dir/compute_scalar_product_of_landscapes_on_grid.cpp.o -o compute_scalar_product_of_landscapes_on_grid /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 52%] Built target compute_scalar_product_of_landscapes_on_grid make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_distance_of_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_distance_of_landscapes_on_grid.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_distance_of_landscapes_on_grid.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_distance_of_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_distance_of_landscapes_on_grid.dir/build make[4]: Entering directory '/<>/build/userversion' [ 52%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_distance_of_landscapes_on_grid.dir/compute_distance_of_landscapes_on_grid.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/compute_distance_of_landscapes_on_grid.dir/compute_distance_of_landscapes_on_grid.cpp.o -MF CMakeFiles/compute_distance_of_landscapes_on_grid.dir/compute_distance_of_landscapes_on_grid.cpp.o.d -o CMakeFiles/compute_distance_of_landscapes_on_grid.dir/compute_distance_of_landscapes_on_grid.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid/compute_distance_of_landscapes_on_grid.cpp [ 52%] Linking CXX executable compute_distance_of_landscapes_on_grid cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance_of_landscapes_on_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_distance_of_landscapes_on_grid.dir/compute_distance_of_landscapes_on_grid.cpp.o -o compute_distance_of_landscapes_on_grid /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 52%] Built target compute_distance_of_landscapes_on_grid make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/plot_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/plot_landscapes_on_grid.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/plot_landscapes_on_grid.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/plot_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/plot_landscapes_on_grid.dir/build make[4]: Entering directory '/<>/build/userversion' [ 52%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/plot_landscapes_on_grid.dir/plot_landscapes_on_grid.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/plot_landscapes_on_grid.dir/plot_landscapes_on_grid.cpp.o -MF CMakeFiles/plot_landscapes_on_grid.dir/plot_landscapes_on_grid.cpp.o.d -o CMakeFiles/plot_landscapes_on_grid.dir/plot_landscapes_on_grid.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid/plot_landscapes_on_grid.cpp [ 53%] Linking CXX executable plot_landscapes_on_grid cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/plot_landscapes_on_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plot_landscapes_on_grid.dir/plot_landscapes_on_grid.cpp.o -o plot_landscapes_on_grid /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 53%] Built target plot_landscapes_on_grid make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/average_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/average_landscapes_on_grid.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/average_landscapes_on_grid.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/average_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/average_landscapes_on_grid.dir/build make[4]: Entering directory '/<>/build/userversion' [ 53%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/average_landscapes_on_grid.dir/average_landscapes_on_grid.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/average_landscapes_on_grid.dir/average_landscapes_on_grid.cpp.o -MF CMakeFiles/average_landscapes_on_grid.dir/average_landscapes_on_grid.cpp.o.d -o CMakeFiles/average_landscapes_on_grid.dir/average_landscapes_on_grid.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid/average_landscapes_on_grid.cpp [ 53%] Linking CXX executable average_landscapes_on_grid cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_landscapes_on_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/average_landscapes_on_grid.dir/average_landscapes_on_grid.cpp.o -o average_landscapes_on_grid /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 53%] Built target average_landscapes_on_grid make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/create_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/create_landscapes_on_grid.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/create_landscapes_on_grid.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/create_landscapes_on_grid.dir/build.make src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/create_landscapes_on_grid.dir/build make[4]: Entering directory '/<>/build/userversion' [ 53%] Building CXX object src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/create_landscapes_on_grid.dir/create_landscapes_on_grid.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_landscapes_on_grid/CMakeFiles/create_landscapes_on_grid.dir/create_landscapes_on_grid.cpp.o -MF CMakeFiles/create_landscapes_on_grid.dir/create_landscapes_on_grid.cpp.o.d -o CMakeFiles/create_landscapes_on_grid.dir/create_landscapes_on_grid.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_landscapes_on_grid/create_landscapes_on_grid.cpp [ 54%] Linking CXX executable create_landscapes_on_grid cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_landscapes_on_grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_landscapes_on_grid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_landscapes_on_grid.dir/create_landscapes_on_grid.cpp.o -o create_landscapes_on_grid /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 54%] Built target create_landscapes_on_grid make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/build make[4]: Entering directory '/<>/build/userversion' [ 54%] Building CXX object src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/compute_scalar_product_of_persistence_vectors.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/compute_scalar_product_of_persistence_vectors.cpp.o -MF CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/compute_scalar_product_of_persistence_vectors.cpp.o.d -o CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/compute_scalar_product_of_persistence_vectors.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_vectors/compute_scalar_product_of_persistence_vectors.cpp [ 54%] Linking CXX executable compute_scalar_product_of_persistence_vectors cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_scalar_product_of_persistence_vectors.dir/compute_scalar_product_of_persistence_vectors.cpp.o -o compute_scalar_product_of_persistence_vectors /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 54%] Built target compute_scalar_product_of_persistence_vectors make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_distance_of_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_distance_of_persistence_vectors.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_distance_of_persistence_vectors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_distance_of_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_distance_of_persistence_vectors.dir/build make[4]: Entering directory '/<>/build/userversion' [ 54%] Building CXX object src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_distance_of_persistence_vectors.dir/compute_distance_of_persistence_vectors.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/compute_distance_of_persistence_vectors.dir/compute_distance_of_persistence_vectors.cpp.o -MF CMakeFiles/compute_distance_of_persistence_vectors.dir/compute_distance_of_persistence_vectors.cpp.o.d -o CMakeFiles/compute_distance_of_persistence_vectors.dir/compute_distance_of_persistence_vectors.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_vectors/compute_distance_of_persistence_vectors.cpp [ 54%] Linking CXX executable compute_distance_of_persistence_vectors cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance_of_persistence_vectors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/compute_distance_of_persistence_vectors.dir/compute_distance_of_persistence_vectors.cpp.o -o compute_distance_of_persistence_vectors /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 54%] Built target compute_distance_of_persistence_vectors make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/average_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/average_persistence_vectors.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/average_persistence_vectors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/average_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/average_persistence_vectors.dir/build make[4]: Entering directory '/<>/build/userversion' [ 54%] Building CXX object src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/average_persistence_vectors.dir/average_persistence_vectors.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/average_persistence_vectors.dir/average_persistence_vectors.cpp.o -MF CMakeFiles/average_persistence_vectors.dir/average_persistence_vectors.cpp.o.d -o CMakeFiles/average_persistence_vectors.dir/average_persistence_vectors.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_vectors/average_persistence_vectors.cpp [ 54%] Linking CXX executable average_persistence_vectors cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_persistence_vectors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/average_persistence_vectors.dir/average_persistence_vectors.cpp.o -o average_persistence_vectors /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 54%] Built target average_persistence_vectors make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/plot_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/plot_persistence_vectors.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/plot_persistence_vectors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/plot_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/plot_persistence_vectors.dir/build make[4]: Entering directory '/<>/build/userversion' [ 55%] Building CXX object src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/plot_persistence_vectors.dir/plot_persistence_vectors.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/plot_persistence_vectors.dir/plot_persistence_vectors.cpp.o -MF CMakeFiles/plot_persistence_vectors.dir/plot_persistence_vectors.cpp.o.d -o CMakeFiles/plot_persistence_vectors.dir/plot_persistence_vectors.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_vectors/plot_persistence_vectors.cpp [ 55%] Linking CXX executable plot_persistence_vectors cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/cmake -E cmake_link_script CMakeFiles/plot_persistence_vectors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plot_persistence_vectors.dir/plot_persistence_vectors.cpp.o -o plot_persistence_vectors /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 55%] Built target plot_persistence_vectors make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/create_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/create_persistence_vectors.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/create_persistence_vectors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/create_persistence_vectors.dir/build.make src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/create_persistence_vectors.dir/build make[4]: Entering directory '/<>/build/userversion' [ 55%] Building CXX object src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/create_persistence_vectors.dir/create_persistence_vectors.cpp.o cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistence_representations/utilities/persistence_vectors/CMakeFiles/create_persistence_vectors.dir/create_persistence_vectors.cpp.o -MF CMakeFiles/create_persistence_vectors.dir/create_persistence_vectors.cpp.o.d -o CMakeFiles/create_persistence_vectors.dir/create_persistence_vectors.cpp.o -c /<>/src/Persistence_representations/utilities/persistence_vectors/create_persistence_vectors.cpp [ 56%] Linking CXX executable create_persistence_vectors cd /<>/build/userversion/src/Persistence_representations/utilities/persistence_vectors && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_persistence_vectors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/create_persistence_vectors.dir/create_persistence_vectors.cpp.o -o create_persistence_vectors /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 56%] Built target create_persistence_vectors make -f src/Persistent_cohomology/example/CMakeFiles/rips_multifield_persistence.dir/build.make src/Persistent_cohomology/example/CMakeFiles/rips_multifield_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/example /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/example /<>/build/userversion/src/Persistent_cohomology/example/CMakeFiles/rips_multifield_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/example/CMakeFiles/rips_multifield_persistence.dir/build.make src/Persistent_cohomology/example/CMakeFiles/rips_multifield_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 56%] Building CXX object src/Persistent_cohomology/example/CMakeFiles/rips_multifield_persistence.dir/rips_multifield_persistence.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/example/CMakeFiles/rips_multifield_persistence.dir/rips_multifield_persistence.cpp.o -MF CMakeFiles/rips_multifield_persistence.dir/rips_multifield_persistence.cpp.o.d -o CMakeFiles/rips_multifield_persistence.dir/rips_multifield_persistence.cpp.o -c /<>/src/Persistent_cohomology/example/rips_multifield_persistence.cpp [ 56%] Linking CXX executable rips_multifield_persistence cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/rips_multifield_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/rips_multifield_persistence.dir/rips_multifield_persistence.cpp.o -o rips_multifield_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 56%] Built target rips_multifield_persistence make -f src/Persistent_cohomology/example/CMakeFiles/rips_persistence_via_boundary_matrix.dir/build.make src/Persistent_cohomology/example/CMakeFiles/rips_persistence_via_boundary_matrix.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/example /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/example /<>/build/userversion/src/Persistent_cohomology/example/CMakeFiles/rips_persistence_via_boundary_matrix.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/example/CMakeFiles/rips_persistence_via_boundary_matrix.dir/build.make src/Persistent_cohomology/example/CMakeFiles/rips_persistence_via_boundary_matrix.dir/build make[4]: Entering directory '/<>/build/userversion' [ 56%] Building CXX object src/Persistent_cohomology/example/CMakeFiles/rips_persistence_via_boundary_matrix.dir/rips_persistence_via_boundary_matrix.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/example/CMakeFiles/rips_persistence_via_boundary_matrix.dir/rips_persistence_via_boundary_matrix.cpp.o -MF CMakeFiles/rips_persistence_via_boundary_matrix.dir/rips_persistence_via_boundary_matrix.cpp.o.d -o CMakeFiles/rips_persistence_via_boundary_matrix.dir/rips_persistence_via_boundary_matrix.cpp.o -c /<>/src/Persistent_cohomology/example/rips_persistence_via_boundary_matrix.cpp [ 56%] Linking CXX executable rips_persistence_via_boundary_matrix cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/rips_persistence_via_boundary_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/rips_persistence_via_boundary_matrix.dir/rips_persistence_via_boundary_matrix.cpp.o -o rips_persistence_via_boundary_matrix /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 56%] Built target rips_persistence_via_boundary_matrix make -f src/Persistent_cohomology/example/CMakeFiles/custom_persistence_sort.dir/build.make src/Persistent_cohomology/example/CMakeFiles/custom_persistence_sort.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/example /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/example /<>/build/userversion/src/Persistent_cohomology/example/CMakeFiles/custom_persistence_sort.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/example/CMakeFiles/custom_persistence_sort.dir/build.make src/Persistent_cohomology/example/CMakeFiles/custom_persistence_sort.dir/build make[4]: Entering directory '/<>/build/userversion' [ 56%] Building CXX object src/Persistent_cohomology/example/CMakeFiles/custom_persistence_sort.dir/custom_persistence_sort.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/example/CMakeFiles/custom_persistence_sort.dir/custom_persistence_sort.cpp.o -MF CMakeFiles/custom_persistence_sort.dir/custom_persistence_sort.cpp.o.d -o CMakeFiles/custom_persistence_sort.dir/custom_persistence_sort.cpp.o -c /<>/src/Persistent_cohomology/example/custom_persistence_sort.cpp [ 56%] Linking CXX executable custom_persistence_sort cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/custom_persistence_sort.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/custom_persistence_sort.dir/custom_persistence_sort.cpp.o -o custom_persistence_sort /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 56%] Built target custom_persistence_sort make -f src/Persistent_cohomology/example/CMakeFiles/rips_persistence_step_by_step.dir/build.make src/Persistent_cohomology/example/CMakeFiles/rips_persistence_step_by_step.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/example /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/example /<>/build/userversion/src/Persistent_cohomology/example/CMakeFiles/rips_persistence_step_by_step.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/example/CMakeFiles/rips_persistence_step_by_step.dir/build.make src/Persistent_cohomology/example/CMakeFiles/rips_persistence_step_by_step.dir/build make[4]: Entering directory '/<>/build/userversion' [ 56%] Building CXX object src/Persistent_cohomology/example/CMakeFiles/rips_persistence_step_by_step.dir/rips_persistence_step_by_step.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/example/CMakeFiles/rips_persistence_step_by_step.dir/rips_persistence_step_by_step.cpp.o -MF CMakeFiles/rips_persistence_step_by_step.dir/rips_persistence_step_by_step.cpp.o.d -o CMakeFiles/rips_persistence_step_by_step.dir/rips_persistence_step_by_step.cpp.o -c /<>/src/Persistent_cohomology/example/rips_persistence_step_by_step.cpp [ 57%] Linking CXX executable rips_persistence_step_by_step cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/rips_persistence_step_by_step.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/rips_persistence_step_by_step.dir/rips_persistence_step_by_step.cpp.o -o rips_persistence_step_by_step /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 57%] Built target rips_persistence_step_by_step make -f src/Persistent_cohomology/example/CMakeFiles/persistence_from_simple_simplex_tree.dir/build.make src/Persistent_cohomology/example/CMakeFiles/persistence_from_simple_simplex_tree.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/example /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/example /<>/build/userversion/src/Persistent_cohomology/example/CMakeFiles/persistence_from_simple_simplex_tree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/example/CMakeFiles/persistence_from_simple_simplex_tree.dir/build.make src/Persistent_cohomology/example/CMakeFiles/persistence_from_simple_simplex_tree.dir/build make[4]: Entering directory '/<>/build/userversion' [ 57%] Building CXX object src/Persistent_cohomology/example/CMakeFiles/persistence_from_simple_simplex_tree.dir/persistence_from_simple_simplex_tree.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/example/CMakeFiles/persistence_from_simple_simplex_tree.dir/persistence_from_simple_simplex_tree.cpp.o -MF CMakeFiles/persistence_from_simple_simplex_tree.dir/persistence_from_simple_simplex_tree.cpp.o.d -o CMakeFiles/persistence_from_simple_simplex_tree.dir/persistence_from_simple_simplex_tree.cpp.o -c /<>/src/Persistent_cohomology/example/persistence_from_simple_simplex_tree.cpp [ 57%] Linking CXX executable persistence_from_simple_simplex_tree cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/persistence_from_simple_simplex_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/persistence_from_simple_simplex_tree.dir/persistence_from_simple_simplex_tree.cpp.o -o persistence_from_simple_simplex_tree /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 57%] Built target persistence_from_simple_simplex_tree make -f src/Persistent_cohomology/example/CMakeFiles/plain_homology.dir/build.make src/Persistent_cohomology/example/CMakeFiles/plain_homology.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/example /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/example /<>/build/userversion/src/Persistent_cohomology/example/CMakeFiles/plain_homology.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/example/CMakeFiles/plain_homology.dir/build.make src/Persistent_cohomology/example/CMakeFiles/plain_homology.dir/build make[4]: Entering directory '/<>/build/userversion' [ 58%] Building CXX object src/Persistent_cohomology/example/CMakeFiles/plain_homology.dir/plain_homology.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/example/CMakeFiles/plain_homology.dir/plain_homology.cpp.o -MF CMakeFiles/plain_homology.dir/plain_homology.cpp.o.d -o CMakeFiles/plain_homology.dir/plain_homology.cpp.o -c /<>/src/Persistent_cohomology/example/plain_homology.cpp [ 58%] Linking CXX executable plain_homology cd /<>/build/userversion/src/Persistent_cohomology/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/plain_homology.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/plain_homology.dir/plain_homology.cpp.o -o plain_homology /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 58%] Built target plain_homology make -f src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/build.make src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/test /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/test /<>/build/userversion/src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/build.make src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/build make[4]: Entering directory '/<>/build/userversion' [ 58%] Building CXX object src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/persistent_cohomology_unit_test_multi_field.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/persistent_cohomology_unit_test_multi_field.cpp.o -MF CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/persistent_cohomology_unit_test_multi_field.cpp.o.d -o CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/persistent_cohomology_unit_test_multi_field.cpp.o -c /<>/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp [ 58%] Linking CXX executable Persistent_cohomology_test_unit_multi_field cd /<>/build/userversion/src/Persistent_cohomology/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistent_cohomology_test_unit_multi_field.dir/persistent_cohomology_unit_test_multi_field.cpp.o -o Persistent_cohomology_test_unit_multi_field /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 58%] Built target Persistent_cohomology_test_unit_multi_field make -f src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/build.make src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/test /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/test /<>/build/userversion/src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/build.make src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/build make[4]: Entering directory '/<>/build/userversion' [ 59%] Building CXX object src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/betti_numbers_unit_test.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/betti_numbers_unit_test.cpp.o -MF CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/betti_numbers_unit_test.cpp.o.d -o CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/betti_numbers_unit_test.cpp.o -c /<>/src/Persistent_cohomology/test/betti_numbers_unit_test.cpp [ 59%] Linking CXX executable Persistent_cohomology_test_betti_numbers cd /<>/build/userversion/src/Persistent_cohomology/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistent_cohomology_test_betti_numbers.dir/betti_numbers_unit_test.cpp.o -o Persistent_cohomology_test_betti_numbers /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 59%] Built target Persistent_cohomology_test_betti_numbers make -f src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit.dir/build.make src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Persistent_cohomology/test /<>/build/userversion /<>/build/userversion/src/Persistent_cohomology/test /<>/build/userversion/src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit.dir/build.make src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 59%] Building CXX object src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit.dir/persistent_cohomology_unit_test.cpp.o cd /<>/build/userversion/src/Persistent_cohomology/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Persistent_cohomology/test/CMakeFiles/Persistent_cohomology_test_unit.dir/persistent_cohomology_unit_test.cpp.o -MF CMakeFiles/Persistent_cohomology_test_unit.dir/persistent_cohomology_unit_test.cpp.o.d -o CMakeFiles/Persistent_cohomology_test_unit.dir/persistent_cohomology_unit_test.cpp.o -c /<>/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp [ 60%] Linking CXX executable Persistent_cohomology_test_unit cd /<>/build/userversion/src/Persistent_cohomology/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Persistent_cohomology_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Persistent_cohomology_test_unit.dir/persistent_cohomology_unit_test.cpp.o -o Persistent_cohomology_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 60%] Built target Persistent_cohomology_test_unit make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_sparse.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_sparse.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/example /<>/build/userversion /<>/build/userversion/src/Rips_complex/example /<>/build/userversion/src/Rips_complex/example/CMakeFiles/Rips_complex_example_sparse.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_sparse.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_sparse.dir/build make[4]: Entering directory '/<>/build/userversion' [ 60%] Building CXX object src/Rips_complex/example/CMakeFiles/Rips_complex_example_sparse.dir/example_sparse_rips.cpp.o cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/example/CMakeFiles/Rips_complex_example_sparse.dir/example_sparse_rips.cpp.o -MF CMakeFiles/Rips_complex_example_sparse.dir/example_sparse_rips.cpp.o.d -o CMakeFiles/Rips_complex_example_sparse.dir/example_sparse_rips.cpp.o -c /<>/src/Rips_complex/example/example_sparse_rips.cpp [ 61%] Linking CXX executable Rips_complex_example_sparse cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rips_complex_example_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Rips_complex_example_sparse.dir/example_sparse_rips.cpp.o -o Rips_complex_example_sparse /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 61%] Built target Rips_complex_example_sparse make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/example /<>/build/userversion /<>/build/userversion/src/Rips_complex/example /<>/build/userversion/src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/build make[4]: Entering directory '/<>/build/userversion' [ 61%] Building CXX object src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/example_rips_complex_from_csv_distance_matrix_file.cpp.o cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/example_rips_complex_from_csv_distance_matrix_file.cpp.o -MF CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/example_rips_complex_from_csv_distance_matrix_file.cpp.o.d -o CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/example_rips_complex_from_csv_distance_matrix_file.cpp.o -c /<>/src/Rips_complex/example/example_rips_complex_from_csv_distance_matrix_file.cpp [ 62%] Linking CXX executable Rips_complex_example_from_csv_distance_matrix cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Rips_complex_example_from_csv_distance_matrix.dir/example_rips_complex_from_csv_distance_matrix_file.cpp.o -o Rips_complex_example_from_csv_distance_matrix /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 62%] Built target Rips_complex_example_from_csv_distance_matrix make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/example /<>/build/userversion /<>/build/userversion/src/Rips_complex/example /<>/build/userversion/src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/build make[4]: Entering directory '/<>/build/userversion' [ 62%] Building CXX object src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/example_one_skeleton_rips_from_points.cpp.o cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/example_one_skeleton_rips_from_points.cpp.o -MF CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/example_one_skeleton_rips_from_points.cpp.o.d -o CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/example_one_skeleton_rips_from_points.cpp.o -c /<>/src/Rips_complex/example/example_one_skeleton_rips_from_points.cpp [ 62%] Linking CXX executable Rips_complex_example_one_skeleton_from_points cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Rips_complex_example_one_skeleton_from_points.dir/example_one_skeleton_rips_from_points.cpp.o -o Rips_complex_example_one_skeleton_from_points /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 62%] Built target Rips_complex_example_one_skeleton_from_points make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/example /<>/build/userversion /<>/build/userversion/src/Rips_complex/example /<>/build/userversion/src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/build make[4]: Entering directory '/<>/build/userversion' [ 63%] Building CXX object src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/example_one_skeleton_rips_from_correlation_matrix.cpp.o cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/example_one_skeleton_rips_from_correlation_matrix.cpp.o -MF CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/example_one_skeleton_rips_from_correlation_matrix.cpp.o.d -o CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/example_one_skeleton_rips_from_correlation_matrix.cpp.o -c /<>/src/Rips_complex/example/example_one_skeleton_rips_from_correlation_matrix.cpp [ 63%] Linking CXX executable Rips_complex_example_one_skeleton_rips_from_correlation_matrix cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Rips_complex_example_one_skeleton_rips_from_correlation_matrix.dir/example_one_skeleton_rips_from_correlation_matrix.cpp.o -o Rips_complex_example_one_skeleton_rips_from_correlation_matrix /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 63%] Built target Rips_complex_example_one_skeleton_rips_from_correlation_matrix make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/example /<>/build/userversion /<>/build/userversion/src/Rips_complex/example /<>/build/userversion/src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/build make[4]: Entering directory '/<>/build/userversion' [ 63%] Building CXX object src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/example_one_skeleton_rips_from_distance_matrix.cpp.o cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/example/CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/example_one_skeleton_rips_from_distance_matrix.cpp.o -MF CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/example_one_skeleton_rips_from_distance_matrix.cpp.o.d -o CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/example_one_skeleton_rips_from_distance_matrix.cpp.o -c /<>/src/Rips_complex/example/example_one_skeleton_rips_from_distance_matrix.cpp [ 64%] Linking CXX executable Rips_complex_example_one_skeleton_from_distance_matrix cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Rips_complex_example_one_skeleton_from_distance_matrix.dir/example_one_skeleton_rips_from_distance_matrix.cpp.o -o Rips_complex_example_one_skeleton_from_distance_matrix /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 64%] Built target Rips_complex_example_one_skeleton_from_distance_matrix make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_off.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_off.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/example /<>/build/userversion /<>/build/userversion/src/Rips_complex/example /<>/build/userversion/src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_off.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_off.dir/build.make src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_off.dir/build make[4]: Entering directory '/<>/build/userversion' [ 64%] Building CXX object src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_off.dir/example_rips_complex_from_off_file.cpp.o cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/example/CMakeFiles/Rips_complex_example_from_off.dir/example_rips_complex_from_off_file.cpp.o -MF CMakeFiles/Rips_complex_example_from_off.dir/example_rips_complex_from_off_file.cpp.o.d -o CMakeFiles/Rips_complex_example_from_off.dir/example_rips_complex_from_off_file.cpp.o -c /<>/src/Rips_complex/example/example_rips_complex_from_off_file.cpp [ 64%] Linking CXX executable Rips_complex_example_from_off cd /<>/build/userversion/src/Rips_complex/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rips_complex_example_from_off.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Rips_complex_example_from_off.dir/example_rips_complex_from_off_file.cpp.o -o Rips_complex_example_from_off /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 64%] Built target Rips_complex_example_from_off make -f src/Rips_complex/test/CMakeFiles/Rips_complex_test_unit.dir/build.make src/Rips_complex/test/CMakeFiles/Rips_complex_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/test /<>/build/userversion /<>/build/userversion/src/Rips_complex/test /<>/build/userversion/src/Rips_complex/test/CMakeFiles/Rips_complex_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/test/CMakeFiles/Rips_complex_test_unit.dir/build.make src/Rips_complex/test/CMakeFiles/Rips_complex_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 64%] Building CXX object src/Rips_complex/test/CMakeFiles/Rips_complex_test_unit.dir/test_rips_complex.cpp.o cd /<>/build/userversion/src/Rips_complex/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/test/CMakeFiles/Rips_complex_test_unit.dir/test_rips_complex.cpp.o -MF CMakeFiles/Rips_complex_test_unit.dir/test_rips_complex.cpp.o.d -o CMakeFiles/Rips_complex_test_unit.dir/test_rips_complex.cpp.o -c /<>/src/Rips_complex/test/test_rips_complex.cpp [ 64%] Linking CXX executable Rips_complex_test_unit cd /<>/build/userversion/src/Rips_complex/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rips_complex_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Rips_complex_test_unit.dir/test_rips_complex.cpp.o -o Rips_complex_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 64%] Built target Rips_complex_test_unit make -f src/Rips_complex/utilities/CMakeFiles/sparse_rips_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/sparse_rips_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/utilities /<>/build/userversion /<>/build/userversion/src/Rips_complex/utilities /<>/build/userversion/src/Rips_complex/utilities/CMakeFiles/sparse_rips_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/utilities/CMakeFiles/sparse_rips_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/sparse_rips_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 65%] Building CXX object src/Rips_complex/utilities/CMakeFiles/sparse_rips_persistence.dir/sparse_rips_persistence.cpp.o cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/utilities/CMakeFiles/sparse_rips_persistence.dir/sparse_rips_persistence.cpp.o -MF CMakeFiles/sparse_rips_persistence.dir/sparse_rips_persistence.cpp.o.d -o CMakeFiles/sparse_rips_persistence.dir/sparse_rips_persistence.cpp.o -c /<>/src/Rips_complex/utilities/sparse_rips_persistence.cpp [ 65%] Linking CXX executable sparse_rips_persistence cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/sparse_rips_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/sparse_rips_persistence.dir/sparse_rips_persistence.cpp.o -o sparse_rips_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 65%] Built target sparse_rips_persistence make -f src/Rips_complex/utilities/CMakeFiles/rips_correlation_matrix_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/rips_correlation_matrix_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/utilities /<>/build/userversion /<>/build/userversion/src/Rips_complex/utilities /<>/build/userversion/src/Rips_complex/utilities/CMakeFiles/rips_correlation_matrix_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/utilities/CMakeFiles/rips_correlation_matrix_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/rips_correlation_matrix_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 65%] Building CXX object src/Rips_complex/utilities/CMakeFiles/rips_correlation_matrix_persistence.dir/rips_correlation_matrix_persistence.cpp.o cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/utilities/CMakeFiles/rips_correlation_matrix_persistence.dir/rips_correlation_matrix_persistence.cpp.o -MF CMakeFiles/rips_correlation_matrix_persistence.dir/rips_correlation_matrix_persistence.cpp.o.d -o CMakeFiles/rips_correlation_matrix_persistence.dir/rips_correlation_matrix_persistence.cpp.o -c /<>/src/Rips_complex/utilities/rips_correlation_matrix_persistence.cpp [ 65%] Linking CXX executable rips_correlation_matrix_persistence cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/rips_correlation_matrix_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/rips_correlation_matrix_persistence.dir/rips_correlation_matrix_persistence.cpp.o -o rips_correlation_matrix_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 65%] Built target rips_correlation_matrix_persistence make -f src/Rips_complex/utilities/CMakeFiles/rips_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/rips_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/utilities /<>/build/userversion /<>/build/userversion/src/Rips_complex/utilities /<>/build/userversion/src/Rips_complex/utilities/CMakeFiles/rips_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/utilities/CMakeFiles/rips_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/rips_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 66%] Building CXX object src/Rips_complex/utilities/CMakeFiles/rips_persistence.dir/rips_persistence.cpp.o cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/utilities/CMakeFiles/rips_persistence.dir/rips_persistence.cpp.o -MF CMakeFiles/rips_persistence.dir/rips_persistence.cpp.o.d -o CMakeFiles/rips_persistence.dir/rips_persistence.cpp.o -c /<>/src/Rips_complex/utilities/rips_persistence.cpp [ 66%] Linking CXX executable rips_persistence cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/rips_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/rips_persistence.dir/rips_persistence.cpp.o -o rips_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 66%] Built target rips_persistence make -f src/Rips_complex/utilities/CMakeFiles/rips_distance_matrix_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/rips_distance_matrix_persistence.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Rips_complex/utilities /<>/build/userversion /<>/build/userversion/src/Rips_complex/utilities /<>/build/userversion/src/Rips_complex/utilities/CMakeFiles/rips_distance_matrix_persistence.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Rips_complex/utilities/CMakeFiles/rips_distance_matrix_persistence.dir/build.make src/Rips_complex/utilities/CMakeFiles/rips_distance_matrix_persistence.dir/build make[4]: Entering directory '/<>/build/userversion' [ 67%] Building CXX object src/Rips_complex/utilities/CMakeFiles/rips_distance_matrix_persistence.dir/rips_distance_matrix_persistence.cpp.o cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Rips_complex/utilities/CMakeFiles/rips_distance_matrix_persistence.dir/rips_distance_matrix_persistence.cpp.o -MF CMakeFiles/rips_distance_matrix_persistence.dir/rips_distance_matrix_persistence.cpp.o.d -o CMakeFiles/rips_distance_matrix_persistence.dir/rips_distance_matrix_persistence.cpp.o -c /<>/src/Rips_complex/utilities/rips_distance_matrix_persistence.cpp [ 67%] Linking CXX executable rips_distance_matrix_persistence cd /<>/build/userversion/src/Rips_complex/utilities && /usr/bin/cmake -E cmake_link_script CMakeFiles/rips_distance_matrix_persistence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/rips_distance_matrix_persistence.dir/rips_distance_matrix_persistence.cpp.o -o rips_distance_matrix_persistence /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 67%] Built target rips_distance_matrix_persistence make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/example /<>/build/userversion /<>/build/userversion/src/Simplex_tree/example /<>/build/userversion/src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/build make[4]: Entering directory '/<>/build/userversion' [ 67%] Building CXX object src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/graph_expansion_with_blocker.cpp.o cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/graph_expansion_with_blocker.cpp.o -MF CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/graph_expansion_with_blocker.cpp.o.d -o CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/graph_expansion_with_blocker.cpp.o -c /<>/src/Simplex_tree/example/graph_expansion_with_blocker.cpp [ 67%] Linking CXX executable Simplex_tree_example_graph_expansion_with_blocker cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_example_graph_expansion_with_blocker.dir/graph_expansion_with_blocker.cpp.o -o Simplex_tree_example_graph_expansion_with_blocker /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 67%] Built target Simplex_tree_example_graph_expansion_with_blocker make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/example /<>/build/userversion /<>/build/userversion/src/Simplex_tree/example /<>/build/userversion/src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/build make[4]: Entering directory '/<>/build/userversion' [ 68%] Building CXX object src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/cech_complex_cgal_mini_sphere_3d.cpp.o cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/cech_complex_cgal_mini_sphere_3d.cpp.o -MF CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/cech_complex_cgal_mini_sphere_3d.cpp.o.d -o CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/cech_complex_cgal_mini_sphere_3d.cpp.o -c /<>/src/Simplex_tree/example/cech_complex_cgal_mini_sphere_3d.cpp [ 68%] Linking CXX executable Simplex_tree_example_cech_complex_cgal_mini_sphere_3d cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_example_cech_complex_cgal_mini_sphere_3d.dir/cech_complex_cgal_mini_sphere_3d.cpp.o -o Simplex_tree_example_cech_complex_cgal_mini_sphere_3d /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 68%] Built target Simplex_tree_example_cech_complex_cgal_mini_sphere_3d make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/example /<>/build/userversion /<>/build/userversion/src/Simplex_tree/example /<>/build/userversion/src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/build make[4]: Entering directory '/<>/build/userversion' [ 68%] Building CXX object src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/example_alpha_shapes_3_simplex_tree_from_off_file.cpp.o cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/example_alpha_shapes_3_simplex_tree_from_off_file.cpp.o -MF CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/example_alpha_shapes_3_simplex_tree_from_off_file.cpp.o.d -o CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/example_alpha_shapes_3_simplex_tree_from_off_file.cpp.o -c /<>/src/Simplex_tree/example/example_alpha_shapes_3_simplex_tree_from_off_file.cpp [ 68%] Linking CXX executable Simplex_tree_example_alpha_shapes_3_from_off cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_example_alpha_shapes_3_from_off.dir/example_alpha_shapes_3_simplex_tree_from_off_file.cpp.o -o Simplex_tree_example_alpha_shapes_3_from_off /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 68%] Built target Simplex_tree_example_alpha_shapes_3_from_off make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/example /<>/build/userversion /<>/build/userversion/src/Simplex_tree/example /<>/build/userversion/src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/build make[4]: Entering directory '/<>/build/userversion' [ 68%] Building CXX object src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/mini_simplex_tree.cpp.o cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/mini_simplex_tree.cpp.o -MF CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/mini_simplex_tree.cpp.o.d -o CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/mini_simplex_tree.cpp.o -c /<>/src/Simplex_tree/example/mini_simplex_tree.cpp [ 69%] Linking CXX executable Simplex_tree_example_mini_simplex_tree cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_example_mini_simplex_tree.dir/mini_simplex_tree.cpp.o -o Simplex_tree_example_mini_simplex_tree /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 69%] Built target Simplex_tree_example_mini_simplex_tree make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/example /<>/build/userversion /<>/build/userversion/src/Simplex_tree/example /<>/build/userversion/src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/build make[4]: Entering directory '/<>/build/userversion' [ 69%] Building CXX object src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/simple_simplex_tree.cpp.o cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/simple_simplex_tree.cpp.o -MF CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/simple_simplex_tree.cpp.o.d -o CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/simple_simplex_tree.cpp.o -c /<>/src/Simplex_tree/example/simple_simplex_tree.cpp [ 69%] Linking CXX executable Simplex_tree_example_simple_simplex_tree cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_example_simple_simplex_tree.dir/simple_simplex_tree.cpp.o -o Simplex_tree_example_simple_simplex_tree /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 69%] Built target Simplex_tree_example_simple_simplex_tree make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/example /<>/build/userversion /<>/build/userversion/src/Simplex_tree/example /<>/build/userversion/src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/build.make src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/build make[4]: Entering directory '/<>/build/userversion' [ 69%] Building CXX object src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/simplex_tree_from_cliques_of_graph.cpp.o cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/example/CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/simplex_tree_from_cliques_of_graph.cpp.o -MF CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/simplex_tree_from_cliques_of_graph.cpp.o.d -o CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/simplex_tree_from_cliques_of_graph.cpp.o -c /<>/src/Simplex_tree/example/simplex_tree_from_cliques_of_graph.cpp [ 70%] Linking CXX executable Simplex_tree_example_from_cliques_of_graph cd /<>/build/userversion/src/Simplex_tree/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_example_from_cliques_of_graph.dir/simplex_tree_from_cliques_of_graph.cpp.o -o Simplex_tree_example_from_cliques_of_graph /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 70%] Built target Simplex_tree_example_from_cliques_of_graph make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/test /<>/build/userversion /<>/build/userversion/src/Simplex_tree/test /<>/build/userversion/src/Simplex_tree/test/CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 70%] Building CXX object src/Simplex_tree/test/CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/simplex_tree_make_filtration_non_decreasing_unit_test.cpp.o cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/test/CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/simplex_tree_make_filtration_non_decreasing_unit_test.cpp.o -MF CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/simplex_tree_make_filtration_non_decreasing_unit_test.cpp.o.d -o CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/simplex_tree_make_filtration_non_decreasing_unit_test.cpp.o -c /<>/src/Simplex_tree/test/simplex_tree_make_filtration_non_decreasing_unit_test.cpp [ 71%] Linking CXX executable Simplex_tree_make_filtration_non_decreasing_test_unit cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_make_filtration_non_decreasing_test_unit.dir/simplex_tree_make_filtration_non_decreasing_unit_test.cpp.o -o Simplex_tree_make_filtration_non_decreasing_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 71%] Built target Simplex_tree_make_filtration_non_decreasing_test_unit make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/test /<>/build/userversion /<>/build/userversion/src/Simplex_tree/test /<>/build/userversion/src/Simplex_tree/test/CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 72%] Building CXX object src/Simplex_tree/test/CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/simplex_tree_iostream_operator_unit_test.cpp.o cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/test/CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/simplex_tree_iostream_operator_unit_test.cpp.o -MF CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/simplex_tree_iostream_operator_unit_test.cpp.o.d -o CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/simplex_tree_iostream_operator_unit_test.cpp.o -c /<>/src/Simplex_tree/test/simplex_tree_iostream_operator_unit_test.cpp [ 72%] Linking CXX executable Simplex_tree_iostream_operator_test_unit cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_iostream_operator_test_unit.dir/simplex_tree_iostream_operator_unit_test.cpp.o -o Simplex_tree_iostream_operator_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 72%] Built target Simplex_tree_iostream_operator_test_unit make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/test /<>/build/userversion /<>/build/userversion/src/Simplex_tree/test /<>/build/userversion/src/Simplex_tree/test/CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 72%] Building CXX object src/Simplex_tree/test/CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/simplex_tree_ctor_and_move_unit_test.cpp.o cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/test/CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/simplex_tree_ctor_and_move_unit_test.cpp.o -MF CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/simplex_tree_ctor_and_move_unit_test.cpp.o.d -o CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/simplex_tree_ctor_and_move_unit_test.cpp.o -c /<>/src/Simplex_tree/test/simplex_tree_ctor_and_move_unit_test.cpp /<>/src/Simplex_tree/test/simplex_tree_ctor_and_move_unit_test.cpp:101:6: warning: explicitly assigning value of variable of type 'Simplex_tree' to itself [-Wself-assign-overloaded] st = st; ~~ ^ ~~ 1 warning generated. [ 73%] Linking CXX executable Simplex_tree_ctor_and_move_test_unit cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_ctor_and_move_test_unit.dir/simplex_tree_ctor_and_move_unit_test.cpp.o -o Simplex_tree_ctor_and_move_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 73%] Built target Simplex_tree_ctor_and_move_test_unit make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_remove_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_remove_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/test /<>/build/userversion /<>/build/userversion/src/Simplex_tree/test /<>/build/userversion/src/Simplex_tree/test/CMakeFiles/Simplex_tree_remove_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_remove_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_remove_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 73%] Building CXX object src/Simplex_tree/test/CMakeFiles/Simplex_tree_remove_test_unit.dir/simplex_tree_remove_unit_test.cpp.o cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/test/CMakeFiles/Simplex_tree_remove_test_unit.dir/simplex_tree_remove_unit_test.cpp.o -MF CMakeFiles/Simplex_tree_remove_test_unit.dir/simplex_tree_remove_unit_test.cpp.o.d -o CMakeFiles/Simplex_tree_remove_test_unit.dir/simplex_tree_remove_unit_test.cpp.o -c /<>/src/Simplex_tree/test/simplex_tree_remove_unit_test.cpp [ 73%] Linking CXX executable Simplex_tree_remove_test_unit cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_remove_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_remove_test_unit.dir/simplex_tree_remove_unit_test.cpp.o -o Simplex_tree_remove_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 73%] Built target Simplex_tree_remove_test_unit make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Simplex_tree/test /<>/build/userversion /<>/build/userversion/src/Simplex_tree/test /<>/build/userversion/src/Simplex_tree/test/CMakeFiles/Simplex_tree_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Simplex_tree/test/CMakeFiles/Simplex_tree_test_unit.dir/build.make src/Simplex_tree/test/CMakeFiles/Simplex_tree_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 73%] Building CXX object src/Simplex_tree/test/CMakeFiles/Simplex_tree_test_unit.dir/simplex_tree_unit_test.cpp.o cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Simplex_tree/test/CMakeFiles/Simplex_tree_test_unit.dir/simplex_tree_unit_test.cpp.o -MF CMakeFiles/Simplex_tree_test_unit.dir/simplex_tree_unit_test.cpp.o.d -o CMakeFiles/Simplex_tree_test_unit.dir/simplex_tree_unit_test.cpp.o -c /<>/src/Simplex_tree/test/simplex_tree_unit_test.cpp [ 74%] Linking CXX executable Simplex_tree_test_unit cd /<>/build/userversion/src/Simplex_tree/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Simplex_tree_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Simplex_tree_test_unit.dir/simplex_tree_unit_test.cpp.o -o Simplex_tree_test_unit /usr/lib/x86_64-linux-gnu/libtbb.so /usr/lib/x86_64-linux-gnu/libtbbmalloc.so -pthread /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 74%] Built target Simplex_tree_test_unit make -f src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_link.dir/build.make src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_link.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Skeleton_blocker/example /<>/build/userversion /<>/build/userversion/src/Skeleton_blocker/example /<>/build/userversion/src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_link.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_link.dir/build.make src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_link.dir/build make[4]: Entering directory '/<>/build/userversion' [ 74%] Building CXX object src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_link.dir/Skeleton_blocker_link.cpp.o cd /<>/build/userversion/src/Skeleton_blocker/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_link.dir/Skeleton_blocker_link.cpp.o -MF CMakeFiles/Skeleton_blocker_example_link.dir/Skeleton_blocker_link.cpp.o.d -o CMakeFiles/Skeleton_blocker_example_link.dir/Skeleton_blocker_link.cpp.o -c /<>/src/Skeleton_blocker/example/Skeleton_blocker_link.cpp [ 75%] Linking CXX executable Skeleton_blocker_example_link cd /<>/build/userversion/src/Skeleton_blocker/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Skeleton_blocker_example_link.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Skeleton_blocker_example_link.dir/Skeleton_blocker_link.cpp.o -o Skeleton_blocker_example_link /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 75%] Built target Skeleton_blocker_example_link make -f src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_iteration.dir/build.make src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_iteration.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Skeleton_blocker/example /<>/build/userversion /<>/build/userversion/src/Skeleton_blocker/example /<>/build/userversion/src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_iteration.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_iteration.dir/build.make src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_iteration.dir/build make[4]: Entering directory '/<>/build/userversion' [ 76%] Building CXX object src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_iteration.dir/Skeleton_blocker_iteration.cpp.o cd /<>/build/userversion/src/Skeleton_blocker/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_iteration.dir/Skeleton_blocker_iteration.cpp.o -MF CMakeFiles/Skeleton_blocker_example_iteration.dir/Skeleton_blocker_iteration.cpp.o.d -o CMakeFiles/Skeleton_blocker_example_iteration.dir/Skeleton_blocker_iteration.cpp.o -c /<>/src/Skeleton_blocker/example/Skeleton_blocker_iteration.cpp [ 76%] Linking CXX executable Skeleton_blocker_example_iteration cd /<>/build/userversion/src/Skeleton_blocker/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Skeleton_blocker_example_iteration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Skeleton_blocker_example_iteration.dir/Skeleton_blocker_iteration.cpp.o -o Skeleton_blocker_example_iteration /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 76%] Built target Skeleton_blocker_example_iteration make -f src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_from_simplices.dir/build.make src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_from_simplices.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Skeleton_blocker/example /<>/build/userversion /<>/build/userversion/src/Skeleton_blocker/example /<>/build/userversion/src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_from_simplices.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_from_simplices.dir/build.make src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_from_simplices.dir/build make[4]: Entering directory '/<>/build/userversion' [ 76%] Building CXX object src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_from_simplices.dir/Skeleton_blocker_from_simplices.cpp.o cd /<>/build/userversion/src/Skeleton_blocker/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Skeleton_blocker/example/CMakeFiles/Skeleton_blocker_example_from_simplices.dir/Skeleton_blocker_from_simplices.cpp.o -MF CMakeFiles/Skeleton_blocker_example_from_simplices.dir/Skeleton_blocker_from_simplices.cpp.o.d -o CMakeFiles/Skeleton_blocker_example_from_simplices.dir/Skeleton_blocker_from_simplices.cpp.o -c /<>/src/Skeleton_blocker/example/Skeleton_blocker_from_simplices.cpp [ 76%] Linking CXX executable Skeleton_blocker_example_from_simplices cd /<>/build/userversion/src/Skeleton_blocker/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/Skeleton_blocker_example_from_simplices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Skeleton_blocker_example_from_simplices.dir/Skeleton_blocker_from_simplices.cpp.o -o Skeleton_blocker_example_from_simplices /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 76%] Built target Skeleton_blocker_example_from_simplices make -f src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_simplifiable.dir/build.make src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_simplifiable.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Skeleton_blocker/test /<>/build/userversion /<>/build/userversion/src/Skeleton_blocker/test /<>/build/userversion/src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_simplifiable.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_simplifiable.dir/build.make src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_simplifiable.dir/build make[4]: Entering directory '/<>/build/userversion' [ 76%] Building CXX object src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_simplifiable.dir/test_skeleton_blocker_simplifiable.cpp.o cd /<>/build/userversion/src/Skeleton_blocker/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_simplifiable.dir/test_skeleton_blocker_simplifiable.cpp.o -MF CMakeFiles/Skeleton_blocker_test_simplifiable.dir/test_skeleton_blocker_simplifiable.cpp.o.d -o CMakeFiles/Skeleton_blocker_test_simplifiable.dir/test_skeleton_blocker_simplifiable.cpp.o -c /<>/src/Skeleton_blocker/test/test_skeleton_blocker_simplifiable.cpp [ 77%] Linking CXX executable Skeleton_blocker_test_simplifiable cd /<>/build/userversion/src/Skeleton_blocker/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Skeleton_blocker_test_simplifiable.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Skeleton_blocker_test_simplifiable.dir/test_skeleton_blocker_simplifiable.cpp.o -o Skeleton_blocker_test_simplifiable /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 77%] Built target Skeleton_blocker_test_simplifiable make -f src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/build.make src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Skeleton_blocker/test /<>/build/userversion /<>/build/userversion/src/Skeleton_blocker/test /<>/build/userversion/src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/build.make src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/build make[4]: Entering directory '/<>/build/userversion' [ 77%] Building CXX object src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/test_skeleton_blocker_geometric_complex.cpp.o cd /<>/build/userversion/src/Skeleton_blocker/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/test_skeleton_blocker_geometric_complex.cpp.o -MF CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/test_skeleton_blocker_geometric_complex.cpp.o.d -o CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/test_skeleton_blocker_geometric_complex.cpp.o -c /<>/src/Skeleton_blocker/test/test_skeleton_blocker_geometric_complex.cpp [ 77%] Linking CXX executable Skeleton_blocker_test_geometric_complex cd /<>/build/userversion/src/Skeleton_blocker/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Skeleton_blocker_test_geometric_complex.dir/test_skeleton_blocker_geometric_complex.cpp.o -o Skeleton_blocker_test_geometric_complex /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 77%] Built target Skeleton_blocker_test_geometric_complex make -f src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_unit.dir/build.make src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_unit.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Skeleton_blocker/test /<>/build/userversion /<>/build/userversion/src/Skeleton_blocker/test /<>/build/userversion/src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_unit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_unit.dir/build.make src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_unit.dir/build make[4]: Entering directory '/<>/build/userversion' [ 77%] Building CXX object src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_unit.dir/test_skeleton_blocker_complex.cpp.o cd /<>/build/userversion/src/Skeleton_blocker/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Skeleton_blocker/test/CMakeFiles/Skeleton_blocker_test_unit.dir/test_skeleton_blocker_complex.cpp.o -MF CMakeFiles/Skeleton_blocker_test_unit.dir/test_skeleton_blocker_complex.cpp.o.d -o CMakeFiles/Skeleton_blocker_test_unit.dir/test_skeleton_blocker_complex.cpp.o -c /<>/src/Skeleton_blocker/test/test_skeleton_blocker_complex.cpp [ 77%] Linking CXX executable Skeleton_blocker_test_unit cd /<>/build/userversion/src/Skeleton_blocker/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Skeleton_blocker_test_unit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/Skeleton_blocker_test_unit.dir/test_skeleton_blocker_complex.cpp.o -o Skeleton_blocker_test_unit /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.74.0 /usr/lib/x86_64-linux-gnu/libgmpxx.so /usr/lib/x86_64-linux-gnu/libmpfr.so /usr/lib/x86_64-linux-gnu/libgmp.so make[4]: Leaving directory '/<>/build/userversion' [ 77%] Built target Skeleton_blocker_test_unit make -f src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/build.make src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/depend make[4]: Entering directory '/<>/build/userversion' cd /<>/build/userversion && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/Spatial_searching/example /<>/build/userversion /<>/build/userversion/src/Spatial_searching/example /<>/build/userversion/src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/userversion' make -f src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/build.make src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/build make[4]: Entering directory '/<>/build/userversion' [ 77%] Building CXX object src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/example_spatial_searching.cpp.o cd /<>/build/userversion/src/Spatial_searching/example && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_RESULT_OF_USE_DECLTYPE -DBOOST_SYSTEM_NO_DEPRECATED -DCGAL_EIGEN3_ENABLED -DCGAL_USE_GMPXX=1 -DGUDHI_USE_TBB -DNOMINMAX -I/<>/build/userversion -I/<>/src/common/include -I/<>/src/Alpha_complex/include -I/<>/src/Bitmap_cubical_complex/include -I/<>/src/Bottleneck_distance/include -I/<>/src/Collapse/include -I/<>/src/Contraction/include -I/<>/src/Cech_complex/include -I/<>/src/Hasse_complex/include -I/<>/src/Persistence_representations/include -I/<>/src/Persistent_cohomology/include -I/<>/src/Rips_complex/include -I/<>/src/Simplex_tree/include -I/<>/src/Skeleton_blocker/include -I/<>/src/Spatial_searching/include -I/<>/src/Subsampling/include -I/<>/src/Tangential_complex/include -I/<>/src/Toplex_map/include -I/<>/src/Witness_complex/include -I/<>/src/Nerve_GIC/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -std=gnu++14 -MD -MT src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/example_spatial_searching.cpp.o -MF CMakeFiles/Spatial_searching_example_spatial_searching.dir/example_spatial_searching.cpp.o.d -o CMakeFiles/Spatial_searching_example_spatial_searching.dir/example_spatial_searching.cpp.o -c /<>/src/Spatial_searching/example/example_spatial_searching.cpp In file included from /<>/src/Spatial_searching/example/example_spatial_searching.cpp:1: /<>/src/Spatial_searching/include/gudhi/Kd_tree_search.h:142:82: error: 'maybe_unused' attribute cannot be applied to types bool contains_point_given_as_coordinates(Coord_iterator pi, Coord_iterator CGAL_UNUSED) const { ^ /usr/include/CGAL/config.h:521:25: note: expanded from macro 'CGAL_UNUSED' # define CGAL_UNUSED [[maybe_unused]] ^ 1 error generated. make[4]: *** [src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/build.make:79: src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/example_spatial_searching.cpp.o] Error 1 make[4]: Leaving directory '/<>/build/userversion' make[3]: *** [CMakeFiles/Makefile2:4767: src/Spatial_searching/example/CMakeFiles/Spatial_searching_example_spatial_searching.dir/all] Error 2 make[3]: Leaving directory '/<>/build/userversion' make[2]: *** [Makefile:149: all] Error 2 make[2]: Leaving directory '/<>/build/userversion' dh_auto_build: error: cd build/userversion && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:55: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:38: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-10-26T19:40:03Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 2591480 Build-Time: 1556 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 58 Job: gudhi_3.4.1+dfsg-2 Machine Architecture: amd64 Package: gudhi Package-Time: 1635 Source-Version: 3.4.1+dfsg-2 Space: 2591480 Status: attempted Version: 3.4.1+dfsg-2 -------------------------------------------------------------------------------- Finished at 2021-10-26T19:40:03Z Build needed 00:27:15, 2591480k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 1636.855373126s DC-Time-Estimation: 1636.855373126 versus expected 4031 (r/m: 1.4626488486284284 ; m: 1636.855373126)